-
1
-
-
0027304542
-
Nucleotide-sequence requirements for self-cleavage of Neurospora VS RNA
-
Guo, H. C. T., Deabreu, D. M., Tillier, E. R. M., Saville, B. J., Olive, J. E. & Collins, R. A. (1993). Nucleotide-sequence requirements for self-cleavage of Neurospora VS RNA. J. Mol. Biol. 232, 351-361.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 351-361
-
-
Guo, H.C.T.1
Deabreu, D.M.2
Tillier, E.R.M.3
Saville, B.J.4
Olive, J.E.5
Collins, R.A.6
-
2
-
-
0028855671
-
Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from Neurospora VS RNA
-
Guo, H. C. T. & Collins, R. A. (1995). Efficient trans-cleavage of a stem-loop RNA substrate by a ribozyme derived from Neurospora VS RNA. EMBO J. 14, 368-376.
-
(1995)
EMBO J.
, vol.14
, pp. 368-376
-
-
Guo, H.C.T.1
Collins, R.A.2
-
3
-
-
0029011972
-
A secondary-structure model for the self-cleaving region of Neurospora VS RNA
-
Beattie, T. L., Olive, J. E. & Collins, R. A. (1995). A secondary-structure model for the self-cleaving region of Neurospora VS RNA. Proc. Natl. Acad. Sci. USA, 92, 4686-4690.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 4686-4690
-
-
Beattie, T.L.1
Olive, J.E.2
Collins, R.A.3
-
4
-
-
0035965132
-
The A730 loop is an important component of the active site of the VS ribozyme
-
Lafontaine, D. A., Wilson, T. J., Norman, D. G. & Lilley, D. M. J. (2001). The A730 loop is an important component of the active site of the VS ribozyme. J. Mol. Biol. 312, 663-674.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 663-674
-
-
Lafontaine, D.A.1
Wilson, T.J.2
Norman, D.G.3
Lilley, D.M.J.4
-
5
-
-
0035869008
-
Structure, folding and activity of the VS ribozyme: Importance of the 2-3-6 helical junction
-
Lafontaine, D. A., Norman, D. G. & Lilley, D. M. J. (2001). Structure, folding and activity of the VS ribozyme: Importance of the 2-3-6 helical junction. EMBO J. 20, 1415-1424.
-
(2001)
EMBO J.
, vol.20
, pp. 1415-1424
-
-
Lafontaine, D.A.1
Norman, D.G.2
Lilley, D.M.J.3
-
6
-
-
0037093486
-
The global structure of the VS ribozyme
-
Lafontaine, D. A., Norman, D. G. & Lilley, D. M. J. (2002). The global structure of the VS ribozyme. EMBO J. 21, 2461-2471.
-
(2002)
EMBO J.
, vol.21
, pp. 2461-2471
-
-
Lafontaine, D.A.1
Norman, D.G.2
Lilley, D.M.J.3
-
7
-
-
0035476689
-
Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme
-
Hiley, S. L. & Collins, R. A. (2001). Rapid formation of a solvent-inaccessible core in the Neurospora Varkud satellite ribozyme. EMBO J. 20, 5461-5469.
-
(2001)
EMBO J.
, vol.20
, pp. 5461-5469
-
-
Hiley, S.L.1
Collins, R.A.2
-
8
-
-
0031564663
-
Identification of functional domains in the self-cleaving Neurospora VS ribozyme using damage selection
-
Beattie, T. L. & Collins, R. A. (1997). Identification of functional domains in the self-cleaving Neurospora VS ribozyme using damage selection. J. Mol. Biol. 267, 830-840.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 830-840
-
-
Beattie, T.L.1
Collins, R.A.2
-
9
-
-
0032475835
-
Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme
-
Sood, V. D., Beattie, T. L. & Collins, R. A. (1998). Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme. J. Mol. Biol. 282, 741-750.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 741-750
-
-
Sood, V.D.1
Beattie, T.L.2
Collins, R.A.3
-
10
-
-
0035834462
-
Functional equivalence of the uridine turn and the hairpin as building blocks of tertiary structure in the Neurospora VS ribozyme
-
Sood, V. D. & Collins, R. A. (2001). Functional equivalence of the uridine turn and the hairpin as building blocks of tertiary structure in the Neurospora VS ribozyme. J. Mol. Biol. 313, 1013-1019.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 1013-1019
-
-
Sood, V.D.1
Collins, R.A.2
-
11
-
-
0029948820
-
A long-range pseudoknot is required for activity of the Neurospora VS ribozyme
-
Rastogi, T., Beattie, T. L., Olive, J. E. & Collins, R. A. (1996). A long-range pseudoknot is required for activity of the Neurospora VS ribozyme. EMBO J. 15, 2820-2825.
-
(1996)
EMBO J.
, vol.15
, pp. 2820-2825
-
-
Rastogi, T.1
Beattie, T.L.2
Olive, J.E.3
Collins, R.A.4
-
12
-
-
0033680079
-
Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis
-
Andersen, A. A. & Collins, R. A. (2000). Rearrangement of a stable RNA secondary structure during VS ribozyme catalysis. Mol. Cell, 5, 469-478.
-
(2000)
Mol. Cell
, vol.5
, pp. 469-478
-
-
Andersen, A.A.1
Collins, R.A.2
-
13
-
-
0034940798
-
Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme
-
Andersen, A. A. & Collins, R. A. (2001). Intramolecular secondary structure rearrangement by the kissing interaction of the Neurospora VS ribozyme. Proc. Natl. Acad. Sci. USA, 98, 7730-7735.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7730-7735
-
-
Andersen, A.A.1
Collins, R.A.2
-
14
-
-
0032534533
-
Hairpin ribozyme cleavage catalysed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions
-
Earnshaw, D. J. & Gait, M. J. (1998). Hairpin ribozyme cleavage catalysed by aminoglycoside antibiotics and the polyamine spermine in the absence of metal ions. Nucl. Acids Res. 26, 5551-5561.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 5551-5561
-
-
Earnshaw, D.J.1
Gait, M.J.2
-
15
-
-
0032192761
-
The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone
-
Murray, J. B., Seyhan, A. A., Walter, N. G., Burke, J. M. & Scott, W. G. (1998). The hammerhead, hairpin and VS ribozymes are catalytically proficient in monovalent cations alone. Chem. Biol. 5, 587-595.
-
(1998)
Chem. Biol.
, vol.5
, pp. 587-595
-
-
Murray, J.B.1
Seyhan, A.A.2
Walter, N.G.3
Burke, J.M.4
Scott, W.G.5
-
16
-
-
0031215134
-
An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis
-
Nesbitt, S., Hegg, L. A. & Fedor, M. J. (1997). An unusual pH-independent and metal-ion-independent mechanism for hairpin ribozyme catalysis. Chem. Biol. 4, 619-630.
-
(1997)
Chem. Biol.
, vol.4
, pp. 619-630
-
-
Nesbitt, S.1
Hegg, L.A.2
Fedor, M.J.3
-
17
-
-
0031194873
-
A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage
-
Hampel, A. & Cowan, J. A. (1997). A unique mechanism for RNA catalysis: The role of metal cofactors in hairpin ribozyme cleavage. Chem. Biol. 4, 513-517.
-
(1997)
Chem. Biol.
, vol.4
, pp. 513-517
-
-
Hampel, A.1
Cowan, J.A.2
-
18
-
-
0030967825
-
Metal ions play a passive role in the hairpin ribozyme catalysed reaction
-
Young, K. J., Gill, F. & Grasby, J. A. (1997). Metal ions play a passive role in the hairpin ribozyme catalysed reaction. Nucl. Acids Res. 25, 3760-3766.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3760-3766
-
-
Young, K.J.1
Gill, F.2
Grasby, J.A.3
-
19
-
-
0028979310
-
Enhancement of Neurospora VS ribozyme cleavage by tuberactinomycin antibiotics
-
Olive, J. E., Deabreu, D. M., Rastogi, T., Andersen, A. A., Mittermaier, A. K., Beattie, T. L. & Collins, R. A. (1995). Enhancement of Neurospora VS ribozyme cleavage by tuberactinomycin antibiotics. EMBO J. 14, 3247-3251.
-
(1995)
EMBO J.
, vol.14
, pp. 3247-3251
-
-
Olive, J.E.1
Deabreu, D.M.2
Rastogi, T.3
Andersen, A.A.4
Mittermaier, A.K.5
Beattie, T.L.6
Collins, R.A.7
-
20
-
-
0035946946
-
Effects of cobalt hexammine on folding and self-cleavage of the Neurospora VS ribozyme
-
Maguire, J. L. & Collins, R. A. (2001). Effects of cobalt hexammine on folding and self-cleavage of the Neurospora VS ribozyme. J. Mol. Biol. 309, 45-56.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 45-56
-
-
Maguire, J.L.1
Collins, R.A.2
-
21
-
-
0036488944
-
The contribution of 2′-hydoxyls to the cleavage activity of the Neurospora VS ribozyme
-
Sood, V. D., Yekta, S. & Collins, R. A. (2002). The contribution of 2′-hydoxyls to the cleavage activity of the Neurospora VS ribozyme. Nucl. Acids Res. 30, 1132-1138.
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 1132-1138
-
-
Sood, V.D.1
Yekta, S.2
Collins, R.A.3
-
22
-
-
0032571266
-
Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA
-
Rastogi, T. & Collins, R. A. (1998). Smaller, faster ribozymes reveal the catalytic core of Neurospora VS RNA. J. Mol. Biol. 277, 215-224.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 215-224
-
-
Rastogi, T.1
Collins, R.A.2
-
23
-
-
0027416218
-
Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA
-
Collins, R. A. & Olive, J. E. (1993). Reaction conditions and kinetics of self-cleavage of a ribozyme derived from Neurospora VS RNA. Biochemistry, 32, 2795-2799.
-
(1993)
Biochemistry
, vol.32
, pp. 2795-2799
-
-
Collins, R.A.1
Olive, J.E.2
-
24
-
-
0025762699
-
Relationship between 2′-hydroxyls and magnesium binding in the hammer-head RNA domain: A model for ribozyme catalysis
-
Perreault, J.-P., Labuda, D., Usman, N., Yang, J.-H. & Cedergren, R. (1991). Relationship between 2′-hydroxyls and magnesium binding in the hammer-head RNA domain: A model for ribozyme catalysis. Biochemistry, 30, 4020-4025.
-
(1991)
Biochemistry
, vol.30
, pp. 4020-4025
-
-
Perreault, J.-P.1
Labuda, D.2
Usman, N.3
Yang, J.-H.4
Cedergren, R.5
-
25
-
-
0344732615
-
-
chapt IX. Longmans, Green and Co. Ltd, London
-
Dixon, M. & Webb, E. C. (1965). Enzymes, 2nd Edit., chapt IX. Longmans, Green and Co. Ltd, London pp. 420-441.
-
(1965)
Enzymes, 2nd Edit.
, pp. 420-441
-
-
Dixon, M.1
Webb, E.C.2
-
26
-
-
0033591274
-
The role of essential pyrimidines in the hairpin ribozyme-catalysed reaction
-
Young, K., Vyle, J. S., Pickering, T. J., Cohen, M. A., Holmes, S. C., Merkel, O. & Grasby, J. A. (1999). The role of essential pyrimidines in the hairpin ribozyme-catalysed reaction. J. Mol. Biol. 288, 853-866.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 853-866
-
-
Young, K.1
Vyle, J.S.2
Pickering, T.J.3
Cohen, M.A.4
Holmes, S.C.5
Merkel, O.6
Grasby, J.A.7
-
27
-
-
0034967913
-
A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA
-
Flinders, J. & Dieckmann, T. (2001). A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA. J. Mol. Biol. 308, 665-679.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 665-679
-
-
Flinders, J.1
Dieckmann, T.2
-
28
-
-
0027997241
-
Matrix assisted laser desorption/ionisation mass spectrometry of enzymatically synthesised RNA up to 150 kDa
-
Kirpekar, F., Nordhoff, E., Kristiansen, K., Roepstorff, P., Lezius, A., Hahner, S. et al. (1994). Matrix assisted laser desorption/ionisation mass spectrometry of enzymatically synthesised RNA up to 150 kDa. Nucl. Acids Res. 22, 3866-3870.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 3866-3870
-
-
Kirpekar, F.1
Nordhoff, E.2
Kristiansen, K.3
Roepstorff, P.4
Lezius, A.5
Hahner, S.6
-
29
-
-
0026102040
-
Configurationally defined phosphorothioate-containing oligoribonucletides in the study of the mechanism of cleavage of the hammerhead ribozyme
-
Slim, G. & Gait, M. J. (1991). Configurationally defined phosphorothioate-containing oligoribonucletides in the study of the mechanism of cleavage of the hammerhead ribozyme. Nucl. Acids Res. 19, 1183-1188.
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 1183-1188
-
-
Slim, G.1
Gait, M.J.2
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