-
1
-
-
0029974748
-
Model of amino acid substitution in proteins encoded by mitochondrial DNA
-
J. Adachi, and M. Hasegawa Model of amino acid substitution in proteins encoded by mitochondrial DNA J. Mol. Evol. 42 1996 459 468
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 459-468
-
-
Adachi, J.1
Hasegawa, M.2
-
2
-
-
0033971346
-
Tight control of respiration by NADH dehydrogenase ND5 subunit gene expression in mouse mitochondria
-
Y. Bai, R.M. Shakeley, and G. Attardi Tight control of respiration by NADH dehydrogenase ND5 subunit gene expression in mouse mitochondria Mol. Cell. Biol. 20 2000 805 815
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 805-815
-
-
Bai, Y.1
Shakeley, R.M.2
Attardi, G.3
-
4
-
-
0033561361
-
Animal mitochondrial genomes
-
J.L. Boore Animal mitochondrial genomes Nucleic Acids Res. 27 1999 1767 1780
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1767-1780
-
-
Boore, J.L.1
-
5
-
-
0031694349
-
Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders
-
Y. Cao Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders J. Mol. Evol. 47 1998 307 322
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 307-322
-
-
Cao, Y.1
-
6
-
-
0034772534
-
Mitochondrial genetic control of assembly and function of complex I in mammalian cells
-
A. Chomyn Mitochondrial genetic control of assembly and function of complex I in mammalian cells J. Bioenerg Biomembranes 133 2001 251 257
-
(2001)
J. Bioenerg Biomembranes
, vol.133
, pp. 251-257
-
-
Chomyn, A.1
-
8
-
-
0023645034
-
Hydrophobicity scales and computational techniques for detecting amphiphatic structures in proteins
-
J.L. Cornette, K.B. Cease, H. Margalit, J.L. Spouge, J.A. Berzofsky, and C. DeLisi Hydrophobicity scales and computational techniques for detecting amphiphatic structures in proteins J. Mol. Biol. 195 1987 659 685
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 659-685
-
-
Cornette, J.L.1
Cease, K.B.2
Margalit, H.3
Spouge, J.L.4
Berzofsky, J.A.5
Delisi, C.6
-
10
-
-
0021691817
-
Analysis of membrane and surface protein sequences with the hydrophobic moment plot
-
D. Eisenberg, E. Schwarz, M. Komaromy, and R. Wall Analysis of membrane and surface protein sequences with the hydrophobic moment plot J. Mol. Biol. 179 1984 125 142
-
(1984)
J. Mol. Biol.
, vol.179
, pp. 125-142
-
-
Eisenberg, D.1
Schwarz, E.2
Komaromy, M.3
Wall, R.4
-
11
-
-
0022510143
-
Identifying nonpolar transmembrane helices in amino acid sequences of membrane proteins
-
D.M. Engelman, T.A. Steitz, and A. Goldman Identifying nonpolar transmembrane helices in amino acid sequences of membrane proteins Annu. Rev. Biophys. Biophys. Chem. 15 1986 321 353
-
(1986)
Annu. Rev. Biophys. Biophys. Chem.
, vol.15
, pp. 321-353
-
-
Engelman, D.M.1
Steitz, T.A.2
Goldman, A.3
-
12
-
-
0031582715
-
Modular evolution of the respiratory NADH:ubiquinone oxidoreductase and the origin of its modules
-
T. Friedrich, and H. Weiss Modular evolution of the respiratory NADH:ubiquinone oxidoreductase and the origin of its modules J. Theor. Biol. 187 1997 529 540
-
(1997)
J. Theor. Biol.
, vol.187
, pp. 529-540
-
-
Friedrich, T.1
Weiss, H.2
-
13
-
-
0030601801
-
Using evolutionary trees in protein secondary structure prediction and other comparative sequence analyses
-
N. Goldman, J.L. Thorne, and D. Jones Using evolutionary trees in protein secondary structure prediction and other comparative sequence analyses J. Mol. Biol. 263 1996 196 208
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 196-208
-
-
Goldman, N.1
Thorne, J.L.2
Jones, D.3
-
14
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
R. Grantham Amino acid difference formula to help explain protein evolution Science 185 1974 862 864
-
(1974)
Science
, vol.185
, pp. 862-864
-
-
Grantham, R.1
-
15
-
-
0032540273
-
Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 a in ice
-
N. Grigorieff Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 A in ice J. Mol. Biol. 277 1998 1033 1046
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 1033-1046
-
-
Grigorieff, N.1
-
16
-
-
0036613509
-
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
-
X. Gu, Y. Wang, and J. Gu Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution Nat. Genet. 31 2002 205 209
-
(2002)
Nat. Genet.
, vol.31
, pp. 205-209
-
-
Gu, X.1
Wang, Y.2
Gu, J.3
-
17
-
-
0032512616
-
Consistent structure between bacterial and mitochondrial NADH:ubiquinone oxidoreductase (complex I)
-
V. Guenebaut, A. Schlitt, H. Weiss, K. Leonard, and T. Friedrich Consistent structure between bacterial and mitochondrial NADH:ubiquinone oxidoreductase (complex I) J. Mol. Biol. 276 1998 105 112
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 105-112
-
-
Guenebaut, V.1
Schlitt, A.2
Weiss, H.3
Leonard, K.4
Friedrich, T.5
-
18
-
-
0042531561
-
Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
-
P.D.N. Hebert, S. Ratnasingham, and J.R. DeWaard Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species Proc. R. Soc. Lond., B Biol. Sci. 270 2003 S596 S599
-
(2003)
Proc. R. Soc. Lond., B Biol. Sci.
, vol.270
-
-
Hebert, P.D.N.1
Ratnasingham, S.2
Dewaard, J.R.3
-
19
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
J. Kyte, and R.F. Doolittle A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 157 1982 105 132
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
20
-
-
0029148491
-
Identification of the mitochondrial NADH dehydrogenase subunit 3 (ND3) as a thyroid hormone regulated gene by whole genome PCR analysis
-
T. Iglesias, J. Caubin, A. Zaballos, J. Bernal, and A. Munoz Identification of the mitochondrial NADH dehydrogenase subunit 3 (ND3) as a thyroid hormone regulated gene by whole genome PCR analysis Biochem. Biophys. Res. Commun. 210 1995 995 1000
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.210
, pp. 995-1000
-
-
Iglesias, T.1
Caubin, J.2
Zaballos, A.3
Bernal, J.4
Munoz, A.5
-
21
-
-
0034350102
-
Comparison of permutation methods for the partial correlation and partial Mantel tests
-
P. Legendre Comparison of permutation methods for the partial correlation and partial Mantel tests J. Stat. Comput. Simul. 67 2000 37 73
-
(2000)
J. Stat. Comput. Simul.
, vol.67
, pp. 37-73
-
-
Legendre, P.1
-
22
-
-
0036213764
-
Modeling mitochondrial protein evolution using structural information
-
P. Liò, and N. Goldman Modeling mitochondrial protein evolution using structural information J. Mol. Evol. 54 2002 519 529
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 519-529
-
-
Liò, P.1
Goldman, N.2
-
24
-
-
0025249842
-
Membrane protein folding and oligomerization: The two-stage model
-
J.L. Popot, and D.M. Engelman Membrane protein folding and oligomerization: the two-stage model Biochemistry 29 1990 4031 4037
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
25
-
-
0030045281
-
Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny
-
C.A. Russo, N. Takezaki, and M. Nei Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny Mol. Biol. Evol. 13 1996 933 942
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 933-942
-
-
Russo, C.A.1
Takezaki, N.2
Nei, M.3
-
26
-
-
0034665878
-
Cryo-electron crystallography of two sub-complexes of bovine complex I reveals the relationship between the membrane and peripheral arms
-
L.A. Sazanov, and J.E. Walker Cryo-electron crystallography of two sub-complexes of bovine complex I reveals the relationship between the membrane and peripheral arms J. Mol. Biol. 302 2000 455 464
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 455-464
-
-
Sazanov, L.A.1
Walker, J.E.2
-
27
-
-
0034691280
-
Resolution of the membrane domain of bovine complex I into subcomplexes: Implications for the structural organization of the enzyme
-
L.A. Sazanov, S.Y. Peak-Chew, I.M. Fearnley, and J.E. Walker Resolution of the membrane domain of bovine complex I into subcomplexes: implications for the structural organization of the enzyme Biochemistry 39 2000 7229 7235
-
(2000)
Biochemistry
, vol.39
, pp. 7229-7235
-
-
Sazanov, L.A.1
Peak-Chew, S.Y.2
Fearnley, I.M.3
Walker, J.E.4
-
28
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
H. Shimodaira, and M. Hasegawa Multiple comparisons of log-likelihoods with applications to phylogenetic inference Mol. Biol. Evol. 16 1999 1114 1116
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
31
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
E.L. Sonnhammer, G. von Heijne, and A. Krogh A hidden Markov model for predicting transmembrane helices in protein sequences ISMB 6 1997 175 182
-
(1997)
ISMB
, vol.6
, pp. 175-182
-
-
Sonnhammer, E.L.1
Von Heijne, G.2
Krogh, A.3
-
32
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: Application to topology prediction
-
G.E. Tusnady, and I. Simon Principles governing amino acid composition of integral membrane proteins: application to topology prediction J. Mol. Biol. 283 1998 489 506
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 489-506
-
-
Tusnady, G.E.1
Simon, I.2
-
33
-
-
0022532186
-
Why mitochondria need a genome
-
G. von Heijne Why mitochondria need a genome FEBS Lett. 198 1986 1 4
-
(1986)
FEBS Lett.
, vol.198
, pp. 1-4
-
-
Von Heijne, G.1
-
34
-
-
0031766244
-
What amino acid properties affect protein evolution?
-
X. Xia, and W.H. Li What amino acid properties affect protein evolution? J. Mol. Evol. 47 1998 557 564
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 557-564
-
-
Xia, X.1
Li, W.H.2
-
36
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Z. Yang Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods J. Mol. Evol. 39 1994 306 314
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
37
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Z. Yang PAML: a program package for phylogenetic analysis by maximum likelihood CABIOS 13 1997 555 556
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
38
-
-
0031792828
-
Models of amino acid substitution and applications to mitochondrial protein evolution
-
Z. Yang, R. Nielsen, and M. Hasegawa Models of amino acid substitution and applications to mitochondrial protein evolution Mol. Biol. Evol. 15 1998 1600 1611
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1600-1611
-
-
Yang, Z.1
Nielsen, R.2
Hasegawa, M.3
|