Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 7, 2004, Pages 2173-2178

  Blalock, Eric M ^a   Geddes, James W ^a   Chen, Kuey Chu ^a   Porter, Nada M ^a   Markesbery, William R ^a   Landfield, Philip W ^a,b  

^a UNIVERSITY OF KENTUCKY   (United States)

^b UNIVERSITY OF KENTUCKY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP DEPENDENT PROTEIN KINASE; GROWTH FACTOR; TRANSCRIPTION FACTOR; TUMOR SUPPRESSOR PROTEIN;

AGED; AGING; ALGORITHM; ALZHEIMER DISEASE; APOPTOSIS; ARTICLE; CALCIUM SIGNALING; CELL ADHESION; CELL DIFFERENTIATION; CELL PROLIFERATION; CONTROLLED STUDY; DISEASE COURSE; DISEASE MARKER; DISEASE SEVERITY; DNA MICROARRAY; DOWN REGULATION; ENERGY METABOLISM; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; GENETICS; HIPPOCAMPUS; HUMAN; HUMAN TISSUE; INFLAMMATION; LIPID METABOLISM; MALE; METABOLISM; MYELINATION; NERVE FIBER; NEUROFIBRILLARY TANGLE; OLIGODENDROGLIA; PATHOGENESIS; PATHOLOGY; PATHOPHYSIOLOGY; PHYSIOLOGY; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN METABOLISM; PROTEIN TRANSPORT; TUMOR SUPPRESSOR GENE;

ALGORITHMS; ALZHEIMER DISEASE; CALCIUM SIGNALING; CYCLIC AMP-DEPENDENT PROTEIN KINASES; DISEASE PROGRESSION; FEMALE; GENE EXPRESSION PROFILING; GENES, TUMOR SUPPRESSOR; HIPPOCAMPUS; HUMANS; MALE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 1242341923     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0308512100     Document Type: Article

References (79)

1. Tanzi, R. E. & Bertram, L. (2001) Neuron 32, 181-184.
2. Klein, W. L., Krafft, G. A. & Finch, C. E. (2001) Trends Neurosci. 24, 219-224.
3. Hardy, J. & Selkoe, D. J. (2002) Science 297, 353-356.
4. Price, D. L. & Sisodia, S. S. (1998) Annu. Rev. Neurosci. 21, 479-505.
5. Mucke, L., Masliah, E., Yu, G. Q., Mallory, M., Rockenstein, E. M., Tatsuno, G., Hu, K., Kholodenko, D., Johnson-Wood, K. & McConlogue, L. (2000) J. Neurosci. 20, 4050-4058.
6. Mullan, M. & Crawford, F. (1994) Mol. Neurobiol. 9, 15-22.
7. Morgan, D. (2003) Neurochem. Res. 28, 1029-1034.
8. Noble, W., Olm, V., Takata, K., Casey, E., Mary, O., Meyerson, J., Gaynor, K., LaFrancois, J., Wang, L., Kondo, T., et al. (2003) Neuron 38, 555-565.
9. Johnson, G. V. & Bailey, C. D. (2002) J. Alzheimer's Dis. 4, 375-398.
10. Sze, C. I., Troncoso, J. C., Kawas, C., Mouton, P., Price, D. L. & Martin, L. J. (1997) J. Neuropathol. Exp. Neural. 56, 933-944.
11. Scheff, S. W. & Price, D. A. (2001) J. Alzheimer's Dis. 3, 495-505.
12. Masliah, E., Mallory, M., Hansen, L., DeTeresa, R., Alford, M. & Terry, R. (1994) Neurosci. Lett. 174, 67-72.
13. Aksenov, M. Y., Aksenova, M. V., Butterfield, D. A., Geddes, J. W. & Markesbery, W. R. (2001) Neuroscience 103, 373-383.
14. Bickford, P. C., Gould, T., Briederick, L., Chadman, K., Pollock, A., Young, D., Shukitt-Hale, B. & Joseph, J. (2000) Brain Res. 866, 211-217.
15. Gibson, G. E. (2002) Free Radical Biol. Med. 32, 1061-1070.
16. Gemma, C., Mesches, M. H., Sepesi, B., Choo, K., Holmes, D. B. & Bickford, P. C. (2002) J. Neurosci. 22, 6114-6120.
17. Mrak, R. E. & Griffin, W. S. (2001) Neurobiol. Aging 22, 903-908.
18. Finch, C. E., Morgan, T., Rozovsky, I., Xie, Z., Weindruch, R. & Prolla, T. (2002) in Microglia in the Degenerating and Regenerating CNS, ed. Streit, W. J. (Springer, New York).
19. Rogers, J., Webster, S., Lue, L. F., Brachova, L., Civin, W. H., Emmerling, M., Shivers, B., Walker, D. & McGeer, P. (1996) Neurobiol. Aging 17, 681-686.
20. Nixon, R. A., Mathews, P. M. & Cataldo, A. M. (2001) J. Alzheimer's Dis. 3, 97-107.
21. Forman, M. S., Lee, V. M. & Trojanowski, J. Q. (2003) Trends Neurosci. 26, 407-410.
22. Disterhoft, J. F., Moyer, J. R., Jr., & Thompson, L. T. (1994) Ann. N. Y. Acad. Sci. 747, 382-406.
23. Landfield, P. W., Thibault, O., Mazzanti, M. L., Porter, N. M. & Kerr, D. S. (1992) J. Neurobiol. 23, 1247-1260.
24. Nixon, R. A., Saito, K. I., Grynspan, F., Griffin, W. R., Katayama, S., Honda, T., Mohan, P. S., Shea, T. B. & Beermann, M. (1994) Ann. N. Y. Acad. Sci. 747, 77-91.
25. Mattson, M. P., LaFerla, F. M., Chan, S. L., Leissring, M. A., Shepel, P. N. & Geiger, J. D. (2000) Trends Neurosci. 23, 222-229.
26. Thibault, O., Porter, N. M., Chen, K. C., Blalock, E. M., Kaminker, P. G., Clodfelter, G. V., Brewer, L. D. & Landfield, P. W. (1998) Cell Calcium 24, 417-433.
27. Arendt, T., Holzer, M., Stobe, A., Gartner, U., Luth, H. J., Bruckner, M. K. & Ueberham, U. (2000) Ann. N. Y. Acad. Sci. 920, 249-255.
28. Bowser, R. & Smith, M. A. (2002) J. Alzheimer's Dis. 4, 249-254.
29. Petanceska, S. S., DeRosa, S., Olm, V., Diaz, N., Sharma, A., Thomas-Bryant, T., Duff, K., Pappolla, M. & Refolo, L. M. (2002) J. Mol. Neurosci. 19, 155-161.
30. Puglielli, L., Konopka, G., Pack-Chung, E., Ingano, L. A., Berezovska, O., Hyman, B. T., Chang, T. Y., Tanzi, R. E. & Kovacs, D. M. (2001) Nat. Cell Biol. 3, 905-912.
31. Green, P. S. & Simpkins, J. W. (2000) Ann. N.Y. Acad. Sci. 924, 93-98.
32. Hoffer, B. & Olson, L. (1997) J. Neural Transm. 49, Suppl., 1-10.
33. Terry, R. (1999) in Alzheimer's Disease, eds. Terry, R., Katzman, R., Bick, K. & Sisodia, S. S. (Lippincott Williams & Wilkins, Philadelphia), pp. 187-206.
34. Schmitt, F. A., Davis, D. G., Wekstein, D. R., Smith, C. D., Ashford, J. W. & Markesbery, W. R. (2000) Neurology 55, 370-376.
35. Mitchell, T. W., Mufson, E. J., Schneider, J. A., Cochran, E. J., Nissanov, J., Han, L. Y., Bienias, J. L., Lee, V. M., Trojanowski, J. Q., Bennett, D. A., et al. (2002) Ann. Neurol. 51, 182-189.
36. Schena, M., Heller, R. A., Theriault, T. P., Konrad, K., Lachenmeier, E. & Davis, R. W. (1998) Trends Biotechnol 16, 301-306.
37. Barlow, C. & Lockhart, D. J. (2002) Curr. Opin. Neurobiol. 12, 554-561.
38. Colangelo, V., Schurr, J., Ball, M. J., Pelaez, R. P., Bazan, N. G. & Lukiw, W. J. (2002) J. Neurosci. Res. 70, 462-473.
39. Ginsberg, S. D., Hemby, S. E., Lee, V. M., Eberwine, J. H. & Trojanowski, J. Q. (2000) Ann. Neurol. 48, 77-87.
40. Loring, J. F., Wen, X., Lee, J. M., Seilhamer, J. & Somogyi, R. (2001) DNA Cell Biol. 20, 683-695.
41. Pasinetti, G. M. (2001) J. Neurosci. Res. 65, 471-476.
42. Yao, P. J., Zhu, M., Pyun, E. I., Brooks, A. I., Therianos, S., Meyers, V. E. & Coleman, P. D. (2003) Neurobiol. Dis. 12, 97-109.
43. Dickey, C. A., Loring, J. F., Montgomery, J., Gordon, M. N., Eastman, P. S. & Morgan, D. (2003) J. Neurosci. 23, 5219-5226.
44. Blalock, E. M., Chen, K. C., Sharrow, K., Herman, J. P., Porter, N. M., Foster, T. C. & Landfield, P. W. (2003) J. Neurosci. 23, 3807-3819.
45. Miller, R. A., Galecki, A. & Shmookler-Reis, R. J. (2001) J. Gerontol. A Biol. Sci. Med. Sci. 56, B52-B57.
46. Clark, C. M., Sheppard, L., Fillenbaum, G. G., Galasko, D., Morris, J. C., Koss, E., Mohs, R. & Heyman, A. (1999) Arch. Neurol. 56, 857-862.
47. Geddes, J. W., Tekirian, T. L., Soultanian, N. S., Ashford, J. W., Davis, D. G. & Markesbery, W. R. (1997) Neurobiol. Aging 18, S99-S105.
48. Hyman, B. T. (1997) Neurobiol. Aging 18, S27-S32.
49. Galasko, D., Hansen, L. A., Katzman, R., Wiederholt, W., Masliah, E., Terry, R., Hill, L. R., Lessin, P. & Thal, L. J. (1994) Arch. Neurol. 51, 888-895.
50. Affymetrix (2001) Affymetrix Microarray Suite User's Guide (Affymetrix, Santa Clara, CA), Version 5.
51. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) Nat. Genet. 25, 25-29.
52. Mirnics, K., Middleton, F. A., Marquez, A., Lewis, D. A. & Levitt, P. (2000) Neuron 28, 53-67.
53. Prolla, T. A., Allison, D. B. & Weindruch, R. (2001) J. Gerontol. A Biol. Sci. Med. Sci. 56, B327-B330.
54. Benjamini, Y., Drai, D., Elmer, G., Kafkafi, N. & Golani, I. (2001) Behav. Brain Res. 125, 279-284.
55. Stork, P. J. & Schmitt, J. M. (2002) Trends Cell Biol. 12, 258-266.
56. de la Monte, S. M., Sohn, Y. K. & Wands, J. R. (1997) J. Neurol. Sci. 152, 73-83.
57. Slack, R. S., Skerjanc, I. S., Lach, B., Craig, J., Jardine, K. & McBurney, M. W. (1995) J. Cell Biol. 129, 779-788.
58. Galderisi, U., Melone, M. A., Jori, F. P., Piegari, E., Di Bernardo, G., Cipollaro, M., Cascino, A., Peluso, G., Claudio, P. P. & Giordano, A. (2001) Mol. Cell Neurosci. 17, 415-425.
59. Lipinski, M. M., Macleod, K. F., Williams, B. O., Mullaney, T. L., Crowley, D. & Jacks, T. (2001) EMBO J. 20, 3402-3413.
60. Miyajima, M., Nornes, H. O., Sato, K. & Neuman, T. (1996) J. Neurosci. Res. 46, 108-113.
61. van Kesteren, R. E., Syed, N. I., Munno, D. W., Bouwman, J., Feng, Z. P., Geraerts, W. P. & Smit, A. B. (2001) J. Neurosci. 21, RC161.
62. Campisi, J. (2001) Trends Cell Biol. 11, S27-S31.
63. Powell, E. M., Meiners, S., DiProspero, N. A. & Geller, H. M. (1997) Cell Tissue Res. 290, 385-393.
64. Fawcett, J. W. & Asher, R. A. (1999) Brain Res. Bull. 49, 377-391.
65. McKeon, R. J., Jurynec, M. J. & Buck, C. R. (1999) J. Neurosci. 19, 10778-10788.
66. Minamitani, T., Ariga, H. & Matsumoto, K. (2002) Biol. Pharm. Bull. 25, 1472-1475.
67. Sasaki, H. & Fukushima, M. (1994) Anticancer Drugs 5, 131-138.
68. Xie, R. L., Gupta, S., Miele, A., Shiffman, D., Stein, J. L., Stein, G. S. & van Wijnen, A. J. (2003) J. Biol. Chem. 278, 26589-26596.
69. Bordin, S. & Tan, X. (2001) Cell Signalling 13, 119-123.
70. Nagarajan, R., Svaren, J., Le, N., Araki, T., Watson, M. & Milbrandt, J. (2001) Neuron 30, 355-368.
71. Wei, Q., Miskimins, W. K. & Miskimins, R. (2003) Mol. Cell. Biol. 23, 4035-4045.
72. Wang, J. Z., Wu, Q., Smith, A., Grundke-Iqbal, I. & Iqbal, K. (1998) FEBS Lett. 436, 28-34.
73. Howard, C. M., Claudio, P. P., De Luca, A., Stiegler, P., Jori, F. P., Safdar, N. M., Caputi, M., Khalili, K. & Giordano, A. (2000) Cancer Res. 60, 2737-2744.
74. Durand, B. & Raff, M. (2000) BioEssays 22, 64-71.
75. Oh, L. Y., Denninger, A., Colvin, J. S., Vyas, A., Tole, S., Ornitz, D. M. & Bansal, R. (2003) J. Neurosci. 23, 883-894.
76. Bagri, A., Cheng, H. J., Yaron, A., Pleasure, S. J. & Tessier-Lavigne, M. (2003) Cell 113, 285-299.
77. Kuhn, T. B., Brown, M. D., Wilcox, C. L., Raper, J. A. & Bamburg, J. R. (1999) J. Neurosci. 19, 1965-1975.
78. Spassky, N., de Castro, F., Le Bras, B., Heydon, K., Queraud-LeSaux, F., Bloch-Gallego, E., Chedotal, A., Zalc, B. & Thomas, J. L. (2002) J. Neurosci. 22, 5992-6004.
79. Braak, H. & Braak, E. (1998) J. Neural Transm. Suppl. 53, 127-140.