-
2
-
-
0031591506
-
Complexities of DNA base excision repair in mammalian cells
-
Mitra, S., Hazra, T.K., Roy, R., Ikeda, S., Biswas, T., Lock, J., Boldogh, I. and Izumi, T. (1997) Complexities of DNA base excision repair in mammalian cells. Mol. Cell, 7, 305-312.
-
(1997)
Mol. Cell
, vol.7
, pp. 305-312
-
-
Mitra, S.1
Hazra, T.K.2
Roy, R.3
Ikeda, S.4
Biswas, T.5
Lock, J.6
Boldogh, I.7
Izumi, T.8
-
3
-
-
0035871360
-
Roles of yeast DNA polymerases δ and ζ and of RevI in the bypass of abasic sites
-
Haracska, L., Unk, I., Johnson, R.E., Johansson, E., Burgers, P.M.J., Prakash, S. and Prakash, L. (2001) Roles of yeast DNA polymerases δ and ζ and of RevI in the bypass of abasic sites. Genes Dev., 15, 945-954.
-
(2001)
Genes Dev.
, vol.15
, pp. 945-954
-
-
Haracska, L.1
Unk, I.2
Johnson, R.E.3
Johansson, E.4
Burgers, P.M.J.5
Prakash, S.6
Prakash, L.7
-
4
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl, T. (1993) Instability and decay of the primary structure of DNA. Nature, 362, 709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
5
-
-
0033152195
-
Endogenous apurinic/apyrimidinic sites in genomic DNA of mammalian tissues
-
Nakamura, J. and Swenberg, J.A. (1999) Endogenous apurinic/apyrimidinic sites in genomic DNA of mammalian tissues. Cancer Res., 59, 2522-2536.
-
(1999)
Cancer Res.
, vol.59
, pp. 2522-2536
-
-
Nakamura, J.1
Swenberg, J.A.2
-
6
-
-
0031309868
-
Repair and processing events at DNA ends
-
Lindahl, T., Barnes, D.E., Klungland, A., Mackenney, V.J. and Schar, P. (1997) Repair and processing events at DNA ends. Ciba Found. Symp. 211, 198-205.
-
(1997)
Ciba Found. Symp.
, vol.211
, pp. 198-205
-
-
Lindahl, T.1
Barnes, D.E.2
Klungland, A.3
Mackenney, V.J.4
Schar, P.5
-
7
-
-
0036628725
-
Choreography of oxidative damage repair in mammalian genomes
-
Mitra,S., Izumi,T., Boldogh,I., Bhakat,K.K., Hill,J.W. and Hazra,T.K. (2002) Choreography of oxidative damage repair in mammalian genomes. Free Radical Biol. Med., 33, 15-28.
-
(2002)
Free Radical Biol. Med.
, vol.33
, pp. 15-28
-
-
Mitra, S.1
Izumi, T.2
Boldogh, I.3
Bhakat, K.K.4
Hill, J.W.5
Hazra, T.K.6
-
8
-
-
0028342951
-
Repair of oxidative damage to DNA: Enzymology and biology
-
Demple,B. and Harrison,L. (1994) Repair of oxidative damage to DNA: enzymology and biology. Annu. Rev. Biochem., 63, 915-948.
-
(1994)
Annu. Rev. Biochem.
, vol.63
, pp. 915-948
-
-
Demple, B.1
Harrison, L.2
-
9
-
-
0025324303
-
Yeast structural gene, (APN1) for the major apurinic endonuclease: Homology to Escherichia coli endonuclease IV
-
Popoff,S.C., Spira,A.I., Johnson,A.W. and Demple,B. (1990) Yeast structural gene, (APN1) for the major apurinic endonuclease: homology to Escherichia coli endonuclease IV. Proc. Natl Acad. Sci. USA, 87, 4193-4197.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4193-4197
-
-
Popoff, S.C.1
Spira, A.I.2
Johnson, A.W.3
Demple, B.4
-
10
-
-
0032980426
-
The Saccharomyces cerevisiae ETH1 gene, an inducible homolog of exonuclease III that provides resistance to DNA-damaging agents and limits spontaneous mutagenesis
-
Bennett,R.A. (1999) The Saccharomyces cerevisiae ETH1 gene, an inducible homolog of exonuclease III that provides resistance to DNA-damaging agents and limits spontaneous mutagenesis. Mol. Cell. Biol., 19, 1800-1809.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1800-1809
-
-
Bennett, R.A.1
-
11
-
-
0032190633
-
Identification of APN2, the Saccharomyces cerevisiae homolog of the major human AP endonuclease HAP1 and its role in the repair of abasic sites
-
Johnson,R.E., Torres-Ramos,C.A., Izumi,T., Mitra,S., Prakash,S. and Prakash,L. (1998) Identification of APN2, the Saccharomyces cerevisiae homolog of the major human AP endonuclease HAP1 and its role in the repair of abasic sites. Genes Dev., 12, 3137-3143.
-
(1998)
Genes Dev.
, vol.12
, pp. 3137-3143
-
-
Johnson, R.E.1
Torres-Ramos, C.A.2
Izumi, T.3
Mitra, S.4
Prakash, S.5
Prakash, L.6
-
12
-
-
0034698089
-
Apurinic endonuclease activity of yeast Apn2 protein
-
Unk,I., Haracska,L., Johnson,R.E., Prakash,S. and Prakash,L. (2000) Apurinic endonuclease activity of yeast Apn2 protein. J. Biol. Chem., 275, 22427-22434.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 22427-22434
-
-
Unk, I.1
Haracska, L.2
Johnson, R.E.3
Prakash, S.4
Prakash, L.5
-
13
-
-
0034746231
-
3′-Phosphodiesterase and 3′→5′ exonulcease activities of yeast Apn2 protein and requirement of these activities for repair of oxidative DNA damage
-
Unk,I., Haracska,L., Prakash,S. and Prakash,L. (2001) 3′-Phosphodiesterase and 3′→5′ exonulcease activities of yeast Apn2 protein and requirement of these activities for repair of oxidative DNA damage. Mol. Cell. Biol., 21, 1656-1661.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 1656-1661
-
-
Unk, I.1
Haracska, L.2
Prakash, S.3
Prakash, L.4
-
14
-
-
0025864553
-
Cellular role of yeast Apn1 apurinic endonuclease/3′-diesterase: Repair of oxidative and alkylation DNA damage and control of spontaneous mutation
-
Ramotar,D., Popoff,S.C., Gralla,E.B. and Demple,B. (1991) Cellular role of yeast Apn1 apurinic endonuclease/3′-diesterase: repair of oxidative and alkylation DNA damage and control of spontaneous mutation. Mol. Cell. Biol., 11, 4537-4544.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 4537-4544
-
-
Ramotar, D.1
Popoff, S.C.2
Gralla, E.B.3
Demple, B.4
-
15
-
-
0033199801
-
The best yeast?
-
Forsburg,S.L. (1999) The best yeast? Trends Genet., 15, 340-344.
-
(1999)
Trends Genet.
, vol.15
, pp. 340-344
-
-
Forsburg, S.L.1
-
16
-
-
0034577919
-
Where does fission yeast sit on the tree of life?
-
Sipiczki,M. (2000) Where does fission yeast sit on the tree of life? Genome Biol., 1, 10-11.
-
(2000)
Genome Biol.
, vol.1
, pp. 10-11
-
-
Sipiczki, M.1
-
17
-
-
0032481667
-
Schizosaccharomyces pombe apn1 encodes a homologue of the Escherichia coli endonuclease IV family of DNA repair proteins
-
Ramotar,D., Vadnais,J., Masson,J.Y. and Tremblay,S. (1998) Schizosaccharomyces pombe apn1 encodes a homologue of the Escherichia coli endonuclease IV family of DNA repair proteins. Biochim. Biophys. Acta, 1396, 15-20.
-
(1998)
Biochim. Biophys. Acta
, vol.1396
, pp. 15-20
-
-
Ramotar, D.1
Vadnais, J.2
Masson, J.Y.3
Tremblay, S.4
-
18
-
-
0033178699
-
Repair of apurinic/apyrimidinic sites by UV damage endonuclease; a repair protein for UV and oxidative damage
-
Kanno,S., Iwai,S., Takao,M. and Yasui,A. (1999) Repair of apurinic/apyrimidinic sites by UV damage endonuclease; a repair protein for UV and oxidative damage. Nucleic Acids Res., 27, 3096-3103.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3096-3103
-
-
Kanno, S.1
Iwai, S.2
Takao, M.3
Yasui, A.4
-
19
-
-
0003846182
-
-
Cold Spring Harbor Laboratory, Press, Cold Spring Harbor, NY
-
Alfa,C., Fantes,P., Hyams,J., Mcleod,M. and Warbrick,E. (1993) Experiments with Fission Yeast. A Laboratory Course Manual. Cold Spring Harbor Laboratory, Press, Cold Spring Harbor, NY.
-
(1993)
Experiments With Fission Yeast. A Laboratory Course Manual
-
-
Alfa, C.1
Fantes, P.2
Hyams, J.3
Mcleod, M.4
Warbrick, E.5
-
20
-
-
0029120399
-
Micro-homology mediated PCR targeting in Saccharomyces cerevisiae
-
Manivasakam,P., Weber,S.C., McElver,J. and Schiestl,R.H. (1995) Micro-homology mediated PCR targeting in Saccharomyces cerevisiae. Nucleic Acids Res., 23, 2799-2800.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2799-2800
-
-
Manivasakam, P.1
Weber, S.C.2
McElver, J.3
Schiestl, R.H.4
-
21
-
-
0032996032
-
A Uve1p-mediated mismatch repair pathway in Schizosaccharomyces pombe
-
Kaur,B., Fraser,J.L., Freyer,G.A., Davey,S. and Doetsch,P.W. (1999) A Uve1p-mediated mismatch repair pathway in Schizosaccharomyces pombe. Mol. Cell. Biol., 19, 4703-4710.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 4703-4710
-
-
Kaur, B.1
Fraser, J.L.2
Freyer, G.A.3
Davey, S.4
Doetsch, P.W.5
-
22
-
-
0034072813
-
Glutathione, but not transcription factor Yap1, is required for carbon source-dependent resistance to oxidative stress in Saccharomyces cerevisiae
-
Maris,A.F., Kern,A.L., Picada,J.N. Boccardi,F., Brendel,M. and Henriques,J.A. (2000) Glutathione, but not transcription factor Yap1, is required for carbon source-dependent resistance to oxidative stress in Saccharomyces cerevisiae. Curr. Genet., 37, 175-182.
-
(2000)
Curr. Genet.
, vol.37
, pp. 175-182
-
-
Maris, A.F.1
Kern, A.L.2
Picada, J.N.3
Boccardi, F.4
Brendel, M.5
Henriques, J.A.6
-
23
-
-
0033600859
-
(+) forkhead transcription factor homologue is not lethal but causes hyphal growth in Schizosaccharomyces pombe
-
(+) forkhead transcription factor homologue is not lethal but causes hyphal growth in Schizosaccharomyces pombe. Biochem. Biophys. Res. Commun., 263, 465-474.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.263
, pp. 465-474
-
-
Ribar, B.1
Grallert, A.2
Olah, E.3
Szallasi, Z.4
-
24
-
-
0031901923
-
Deletion analysis of human AP-endonuclease: Minimum sequence required for the endonuclease activity
-
Izumi,T. and Mitra,S. (1998) Deletion analysis of human AP-endonuclease: minimum sequence required for the endonuclease activity. Carcinogenesis, 19, 525-527.
-
(1998)
Carcinogenesis
, vol.19
, pp. 525-527
-
-
Izumi, T.1
Mitra, S.2
-
25
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet,F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10881.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 10881-10881
-
-
Corpet, F.1
-
26
-
-
0033529716
-
Structure of the DNA repair enzyme endonuclease IV and its DNA complex: Double-nucleotide flipping at abasic sites and three-metal-ion catalysis
-
Hosfield,D.J., Guan,Y., Haas,B.T. Cunningham,R.P. and Tainer,J.A. (1999) Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis. Cell, 98, 397-408.
-
(1999)
Cell
, vol.98
, pp. 397-408
-
-
Hosfield, D.J.1
Guan, Y.2
Haas, B.T.3
Cunningham, R.P.4
Tainer, J.A.5
-
27
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, J.5
-
28
-
-
0029829265
-
The redox/DNA repair protein, Ref-1, is essential for early embryonic development in mice
-
Xanthoudakis,S., Smeyne,R.J., Wallace,D. and Curran,T. (1996) The redox/DNA repair protein, Ref-1, is essential for early embryonic development in mice. Proc. Natl Acad. Sci. USA, 93, 8919-8923.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8919-8923
-
-
Xanthoudakis, S.1
Smeyne, R.J.2
Wallace, D.3
Curran, T.4
-
29
-
-
0035369734
-
Human APE2 protein is mostly localized in the nuclei and to some extent in the mitochondria, while nuclear APE2 is partly associated with proliferating cell nuclear antigen
-
Tsuchimoto,D., Sakai,Y., Sakumi,K., Nishioka,K., Sasaki,M., Fujiwara,T. and Nakabeppu,Y. (2001) Human APE2 protein is mostly localized in the nuclei and to some extent in the mitochondria, while nuclear APE2 is partly associated with proliferating cell nuclear antigen. Nucleic Acids Res., 29, 2349-2360.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2349-2360
-
-
Tsuchimoto, D.1
Sakai, Y.2
Sakumi, K.3
Nishioka, K.4
Sasaki, M.5
Fujiwara, T.6
Nakabeppu, Y.7
-
30
-
-
0034531986
-
Second human protein with homology to the Escherichia coli abasic endonuclease exonuclease III
-
Hadi,M.Z. and Wilson,D.,III (2000) Second human protein with homology to the Escherichia coli abasic endonuclease exonuclease III. Environ. Mol. Mutagen., 36, 312-324.
-
(2000)
Environ. Mol. Mutagen.
, vol.36
, pp. 312-324
-
-
Hadi, M.Z.1
Wilson III, D.2
-
31
-
-
0036707526
-
Stimulation of 3′-5′ exonuclease and 3′-phosphodiesterase activities of yeast Apn2 by proliferating nuclear antigen
-
Unk,I., Haracska,L., Gomes,X., Burgers,P.M.J., Prakash,S. and Prakash,L. (2002). Stimulation of 3′-5′ exonuclease and 3′-phosphodiesterase activities of yeast Apn2 by proliferating nuclear antigen. Mol. Cell. Biol., 22, 6480-6486.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 6480-6486
-
-
Unk, I.1
Haracska, L.2
Gomes, X.3
Burgers, P.M.J.4
Prakash, S.5
Prakash, L.6
-
32
-
-
0028657625
-
Purification and biochemical characterization of recombinant N-methylpurine-DNA glycosylase of the mouse
-
Roy,R., Brooks,C. and Mitra,S. (1994) Purification and biochemical characterization of recombinant N-methylpurine-DNA glycosylase of the mouse. Biochemistry, 33, 15131-15140.
-
(1994)
Biochemistry
, vol.33
, pp. 15131-15140
-
-
Roy, R.1
Brooks, C.2
Mitra, S.3
-
33
-
-
0030600463
-
Cloning and characterization of a cDNA encoding a 3-methyladenine DNA glycosylase from the fission yeast Schizosaccharomyces pombe
-
Memisoglu,A. and Samson,L. (1996) Cloning and characterization of a cDNA encoding a 3-methyladenine DNA glycosylase from the fission yeast Schizosaccharomyces pombe. Gene, 177, 229-235.
-
(1996)
Gene
, vol.177
, pp. 229-235
-
-
Memisoglu, A.1
Samson, L.2
-
34
-
-
0023015325
-
Mutagenesis by apurinic/apyrimidinic sites
-
Loeb,L.A. and Preston,B.D. (1980) Mutagenesis by apurinic/apyrimidinic sites. Annu. Rev. Genet., 20, 201-230.
-
(1980)
Annu. Rev. Genet.
, vol.20
, pp. 201-230
-
-
Loeb, L.A.1
Preston, B.D.2
-
35
-
-
0034733601
-
Repair of UV damage in the fission yeast Schizosaccharomyces pombe
-
McCready,S.J., Osman,F. and Yasui,A. (2000) Repair of UV damage in the fission yeast Schizosaccharomyces pombe. Mutat. Res., 451, 197-210.
-
(2000)
Mutat. Res.
, vol.451
, pp. 197-210
-
-
McCready, S.J.1
Osman, F.2
Yasui, A.3
-
36
-
-
0029989496
-
Characterization of a UV endonuclease gene from the fission yeast Schizosaccharomyces pombe and its bacterial homolog
-
Takao,M., Yonemasu,R., Yamamoto,K. and Yasui,A. (1996) Characterization of a UV endonuclease gene from the fission yeast Schizosaccharomyces pombe and its bacterial homolog. Nucleic Acids Res., 24, 1267-1271.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 1267-1271
-
-
Takao, M.1
Yonemasu, R.2
Yamamoto, K.3
Yasui, A.4
-
37
-
-
0028137259
-
A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts
-
Bowman,K.K., Sidik,K., Smith,C.A., Taylor,J.S., Doetsch,P.W. and Freyer,G.A. (1994) A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts. Nucleic Acids Res., 22, 3026-3032.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3026-3032
-
-
Bowman, K.K.1
Sidik, K.2
Smith, C.A.3
Taylor, J.S.4
Doetsch, P.W.5
Freyer, G.A.6
-
38
-
-
0030769490
-
Characterization of the alternative excision repair pathway of UV-damaged DNA in Schizosaccharomyces pombe
-
Yonemasu,R., McCready,S.J., Murray,J.M., Osman,F., Takao,M., Yamamoto,K., Lehmann,A.R. and Yasui,A. (1997) Characterization of the alternative excision repair pathway of UV-damaged DNA in Schizosaccharomyces pombe. Nucleic Acids Res., 25, 1553-1558.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1553-1558
-
-
Yonemasu, R.1
McCready, S.J.2
Murray, J.M.3
Osman, F.4
Takao, M.5
Yamamoto, K.6
Lehmann, A.R.7
Yasui, A.8
-
39
-
-
0027185274
-
Comparison of Schizosaccharomyces pombe expression systems
-
Forsburg,S.L. (1993) Comparison of Schizosaccharomyces pombe expression systems Nucleic Acids Res., 21, 2955-2956.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2955-2956
-
-
Forsburg, S.L.1
-
41
-
-
0022901240
-
Endonuclease IV (nfo) mutant of Escherichia coli
-
Cunningham,R.P., Saporito,S.M., Spitzer.S.G. and Weiss,B. (1986) Endonuclease IV (nfo) mutant of Escherichia coli. J. Bacteriol., 168, 1120-1127.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 1120-1127
-
-
Cunningham, R.P.1
Saporito, S.M.2
Spitzer, S.G.3
Weiss, B.4
-
42
-
-
0033105094
-
Conserved domains in DNA repair proteins and evolution of repair systems
-
Aravind,L., Walker,D.R. and Koonin,E.V. (1999) Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res., 27, 1223-1242.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1223-1242
-
-
Aravind, L.1
Walker, D.R.2
Koonin, E.V.3
-
43
-
-
0033151820
-
Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe
-
Avery,A.M., Kaur,B., Taylor,J.S., Mello,J.A., Essigmann,J.M. and Doetsch,P.W. (1999) Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe. Nucleic Acids Res., 27, 2256-2264.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2256-2264
-
-
Avery, A.M.1
Kaur, B.2
Taylor, J.S.3
Mello, J.A.4
Essigmann, J.M.5
Doetsch, P.W.6
-
44
-
-
0037013854
-
Endogenous DNA abasic sites cause cell death in the absence of Apn1, Apn2 and Rad1/Rad10 in Saccharomyces cerevisiae
-
Guillet,M. and Boiteux,S. (2002) Endogenous DNA abasic sites cause cell death in the absence of Apn1, Apn2 and Rad1/Rad10 in Saccharomyces cerevisiae. EMBO J., 21, 2833-2841.
-
(2002)
EMBO J.
, vol.21
, pp. 2833-2841
-
-
Guillet, M.1
Boiteux, S.2
-
45
-
-
0033583089
-
Intragenic suppression of an active site mutation in the human apurinic/apyrimidinic endonuclease
-
Izumi,T., Malecki,J., Chaudhry,M.A., Weinfeld,M., Hill,J.H., Lee,J.C. and Mitra,S. (1999) Intragenic suppression of an active site mutation in the human apurinic/apyrimidinic endonuclease. J. Mol. Biol., 287, 47-57
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 47-57
-
-
Izumi, T.1
Malecki, J.2
Chaudhry, M.A.3
Weinfeld, M.4
Hill, J.H.5
Lee, J.C.6
Mitra, S.7
|