Repair of UV damage in the fission yeast Schizosaccharomyces pombe

Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis

Volumn 451, Issue 1-2, 2000, Pages 197-210

  McCready, Shirley J ^a   Osman, Fekret ^a   Yasui, Akira ^b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b TOHOKU UNIVERSITY   (Japan)

Author keywords

Caffeine; Excision repair; Recombination repair; Repair of UV damage; Schizosaccharomyces pombe; Ultraviolet; uvde; UVER; Yeast

Indexed keywords

CAFFEINE;

CELL CYCLE; DELETION MUTANT; DNA DAMAGE; DNA RECOMBINATION; EXCISION REPAIR; PHOTOREACTIVATION; PRIORITY JOURNAL; PROTEIN EXPRESSION; REVIEW; SCHIZOSACCHAROMYCES POMBE; ULTRAVIOLET IRRADIATION;

CAFFEINE; DNA DAMAGE; DNA REPAIR; DNA-BINDING PROTEINS; ENDODEOXYRIBONUCLEASES; FUNGAL PROTEINS; PHOTOCHEMISTRY; SACCHAROMYCES CEREVISIAE PROTEINS; SCHIZOSACCHAROMYCES; TRANSCRIPTION, GENETIC; ULTRAVIOLET RAYS;

MAMMALIA; SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES; SCHIZOSACCHAROMYCES POMBE; VIOLA (ANGIOSPERM);

EID: 0034733601     PISSN: 00275107     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0027-5107(00)00050-6     Document Type: Review

References (70)

1. Schupbach M. The isolation and genetic characterization of UV-sensitive mutants of Schizosaccharomyces pombe. Mutat. Res. 11:1971;361-371.
2. Nasim A., Smith B.P. Dark repair inhibitors and pathways for repair of radiation damage in Schizosaccharomyces pombe. Mol. Gen. Genet. 132:1974;13-22.
3. Phipps J., Nasim A., Miller D.R. Recovery, repair and mutagenesis in Schizosaccharomyces pombe. Adv. Genet. 23:1985;1-72.
4. Lehmann A.R. Molecular Biology of DNA repair in the fission yeast Schizosaccharomyces pombe. Mutat. Res. 363:1996;147-161.
5. Birnboim H.C., Nasim A. Excision of pyrimidine dimers by several UV-sensitive mutants of S. pombe. Mol. Gen. Genet. 136:1975;1-8.
6. Fabre F. Photoreactivation in the yeast Schizosaccharomyces pombe. Photochem. Photobiol. 15:1972;367-373.
7. Fabre F., Moustacchi E. Removal of pyrimidine dimers in cells of Schizosaccharomyces pombe mutated in different repair pathways. Biochim. Biophys. Acta. 312:1973;617-625.
8. Fabre F. The role of repair mechanisms in the variations of ultraviolet and gamma-radiation sensitivity during the cell cycle of Schizosaccharomyces pombe. Radiat. Res. 56:1973;528-539.
9. Gentner N.E., Werner M.M. Repair in Schizosaccharomyces pombe as measured by recovery from caffeine enhancement of radiation-induced lethality. Mol. Gen. Genet. 142:1975;171-183.
10. Gentner N.E., Werner M.M., Hannan M.A., Nasim A. Contribution of a caffeine-sensitive recombinational repair pathway to survival and mutagenesis in UV-irradiated Schizosaccharomyces pombe. Mol. Gen. Genet. 167:1978;43-49.
11. Murray J.M., Doe C.L., Schenk P., Carr A.M., Lehmann A.R., Watts F.Z. Cloning and characterization of the S. pombe rad15 gene, a homologue of the S. cerevisiae RAD3 and human ERCC2 genes. Nucleic Acids Res. 20:1992;2673-2678.
12. Murray J.M., Tavassoli M., Al-Harithy R., Sheldrick K.S., Lehmann A.R., Carr A.M., Watts F.Z. Structural and functional conservation of the human homologue of the Schizosaccharomyces pombe rad2 gene, which is required for chromosome segregation and recovery from DNA damage. Mol. Cell. Biol. 14:1994;4878-4888.
13. Carr A.M., Schmidt H., Kirchoff S., Muriel W.J., Sheldrick K.S., Griffiths D.J., Basmacioglu C.N., Subramani S., Clegg M., Nasim A., Lehmann A.R. The rad16 gene of Schizosaccharomyces pombe: a homolog of the RAD1 gene of Saccharomyces cerevisiae. Mol. Cell. Biol. 14:1994;2029-2040.
14. McCready S.J., Burkhill H., Evans S. The Saccharomyces cerevisiae RAD2 gene complements a Schizosaccharomyces pombe repair mutation. Curr. Genet. 15:1989;27-30.
15. Yasui A., McCready S.J. Alternative repair pathways for UV-induced DNA damage. BioEssays. 20:1998;291-297.
16. McCready S., Carr A.M., Lehmann A.R. Repair of cyclobutane dimers and 6-4 photoproducts in the fission yeast, Schizosaccharomyces pombe. Mol. Microbiol. 10:1993;885-890.
17. Bowman K.K., Sidik K., Smith C.A., Taylor J.-S., Doetsch P.M., Freyer G.A. A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts. Nucleic Acids Res. 22:1994;3026-3032.
18. Yajima H., Takao M., Yasuhira S., Zhao J.H., Ishii C., Inoue H., Yasui A. A eukaryotic gene encoding an endonuclease that specifically repairs DNA damaged by ultraviolet light. EMBO J. 14:1995;2393-2399.
19. Takao M., Yonemasu R., Yamamoto K., Yasui A. Characterization of a UV endonuclease gene from the fission yeast Schizosaccharomyces pombe and its bacterial homolog. Nucleic Acids Res. 24:1996;1267-1271.
20. Yonemasu R., McCready S., Murray J.M., Osman F., Takao M., Yamamoto K., Lehmann A.R., Yasui A. Characterization of the alternative excision repair pathway of UV damaged DNA in Schizosaccharomyces pombe. Nucleic Acids Res. 25:1997;1553-1558.
21. Wood R.D. Nucleotide excision repair in mammalian cells. J. Biol. Chem. 272:1997;23465-23468.
22. Guzder S.N., Sung P., Prakash L., Prakash S. Yeast DNA repair gene RAD14 encodes a zinc metalloprotein with affinity for ultraviolet-damaged DNA. Proc. Natl. Acad. Sci. U. S. A. 90:1993;5433-5437.
23. Guzder S.N., Bailly V., Sung V., Prakash L., Prakash S. Yeast DNA-repair protein RAD23 promotes complex formation between transcription factor TFIIH and DNA-damage recognition factor RAD14. J. Biol. Chem. 270:1995;8385-8388.
24. Guzder S.N., Sung P., Prakash L., Prakash S. Affinity of yeast nucleotide excision repair factor 2, consisting of the Rad4 and Rad23 proteins, for ultraviolet damaged DNA. J. Biol. Chem. 273:1998;31541-31546.
25. Jansen L.E.T., Verhage R.A., Brouwer J.A. Preferential binding of yeast Rad4 Rad23 complex to damaged DNA. J. Biol. Chem. 273:1998;33111-33114.
26. Verhage R., Zeeman A.M., de Groot N., Gleig F., Bang D.D., van de Putte P., Brouwer J. The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating-type loci are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae. Mol. Cell. Biol. 14:1994;6135-6142.
27. + genes in Schizosaccharomyces pombe. Nucleic Acids Res. 27:1999;3410-3416.
28. McCready S.J. Repair of cyclobutane dimers and 6-4 photoproducts in rad mutants of Saccharomyces cerevisiae. Mutat. Res. 315:1994;261-273.
29. Verhage R.A., Zeeman A.M., Lombaerts M., van de Putte P., Brouwer J. Analysis of gene-and strand-specific repair in the moderately UV-sensitive Saccharomyces cerevisiae rad23 mutant. Mutat. Res. 362:1996;155-165.
30. Fabre F. Relationship between repair mechanisms and induced mitotic recombination after UV irradiation in the yeast Schizosaccharomyces pombe. Effects of caffeine. Mol. Gen. Genet. 117:1972;153-166.
31. Osman F., McCready S.J. The differential effects of caffeine on DNA damage and replication cell cycle checkpoints in Schizosaccharomyces pombe. Mol. Gen. Genet. 260:1998;319-334.
32. Freyer G.A., Davey S., Ferrer J.V., Martin A.M., Beach D., Doetsch P.W. An alternative eukaryotic DNA excision repair pathway. Mol. Cell Biol. 15:1995;4572-4577.
33. Kaur B., Avery A.M., Doetsch P.W. Expression, purification, and characterization of ultraviolet DNA endonuclease from Schizosaccharomyces pombe. Biochemistry. 37:1998;11599-11604.
34. Kanno S., Iwai S., Takao M., Yasui A. Repair of apurinic/apyrimidinic sites by UV damage endonuclease: a repair protein for UV and oxidative DNA damage. Nucleic Acids Res. 27:1999;3096-3103.
35. Aravind L., Walker D.R., Koonin E.V. Conserved domains in DNA repair proteins and evolution of repair proteins. Nucleic Acids Res. 27:1999;1223-1242.
36. Kaur B., Fraser J.L.A., Freyer G.A., Davey S., Doetsch P.W. A Uve1p-mediated mismatch repair pathway in Schizosaccharomyces pombe. Mol. Cell. Biol. 19:1999;4703-4710.
37. Avery A.M., Kaur B., Taylor J.-S., Mello J.A., Essigmann J.M., Doetsch P.W. Substrate specificity of ultraviolet DNA endonuclease (UVDE/Uve1p) from Schizosaccharomyces pombe. Nucleic Acids Res. 27:1999;2256-2264.
38. Davey S., Nass M.L., Ferrer J.V., Sidik K., Eisenberger A., Mitchell D.L., Freyer G.A. The fission yeast UVDR DNA repair pathway is inducible. Nucleic Acids Res. 25:1997;1002-1008.
39. Freyer G.A., Ferrer J.V., Doetsch P.W., Martin A., Lieberman H.B., Davey S. An inducible DNA excision repair pathway in the fission yeast Schizosaccharomyces pombe. J. Cell. Biochem. Suppl. 21A:1995;1267-1271.
40. Lombaerts M., Tijsterman M., Brandsma J.A., Verhage R.A., Brouwer J. Removal of cyclobutane pyrimidine dimers by the UV damage repair and nucleotide excision repair pathways of Schizosaccharomyces pombe. Nucleic Acids Res. 27:1999;2868-2874.
41. Murray J.M., Lindsay H.D., Munday C.A., Carr A.M. Role of Schizosaccharomyces pombe RecQ homologue, recombination and checkpoint genes in UV damage tolerance. Mol. Cell. Biol. 17:1997;6868-6875.
42. +, a fission yeast gene related to the Bloom's and Werner's syndrome genes, is required for reversible S-phase arrest. EMBO J. 16:1997;2682-2692.
43. Qiu J., Guan M.-X., Bailis A.M., Shen B. Saccharomyces cerevisiae exonuclease-1 plays a role in UV resistance that is distinct from nucleotide excision repair. Nucleic Acids Res. 26:1998;3077-3083.
44. Lehmann A.R., Walicka M., Griffiths D.J.F., Murray J.M., Watts F.Z., McCready S., Carr A.M. The rad18 gene of Schizosaccharomyces pombe defines a new subgroup of the SMC superfamily involved in DNA repair. Mol. Cell. Biol. 15:1995;7067-7080.
45. Yoon J.-H., Swiderski P.M., Kaplan B.E., Takao M., Yasui A., Shen B., Pfeiffer G.P. Processing of UV damage in vitro by FEN-1 proteins as part of an alternative DNA excision repair pathway. Biochemistry. 38:1999;4809-4817.
46. Harrington J.J., Lieber M.R. The characterization of a mammalian structure-specific DNA endonuclease. EMBO J. 13:1994;1235-1246.
47. Szanski P., Smith G.R. A role for exonuclease I from S. pombe in mutation avoidance and mismatch correction. Science. 267:1995;1166-1169.
48. Tishkoff, Boerger A.L., Bertrand P., Filosi N., Gaida G.M., Kane M.F., Kolodner R.D. Identification and characterization of Saccharomyces cerevisiae EXO1, a gene encoding an exonuclease that interacts with MSH2. Proc. Natl. Acad. Sci. U. S. A. 94:1997;7487-7492.
49. Lindahl T., Gally J.A., Edelman G.M. Deoxyribonuclease IV: a new exonuclease from mammalian cells. Proc. Natl. Acad. Sci. U. S. A. 62:1964;597-603.
50. Bambara R.A., Murante R.S., Henrickson L.A. Enzymes and reactions at the eukaryotic DNA replication fork. J. Biol. Chem. 272:1997;4647-4650.
51. Wu X., Wilson T.E., Lieber M.R. A role for FEN-1 in non-homologous DNA end joining: the order of strand annealing and nucleolytic processing events. Proc. Natl. Acad. Sci. U. S. A. 96:1999;1303-1308.
52. Lieber M.R. The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair. BioEssays. 19:1997;233-240.
53. Lindahl T., Karran P., Wood R.D. DNA excision repair pathways. Curr. Opin. Genet. Dev. 7:1997;158-169.
54. Reagan M.S., Pittenger C., Siede W., Friedberg E.C. Characterization of a mutant strain of Saccharomyces cerevisiae with a deletion of the RAD27 gene, a structural homologue of the RAD2 nucleotide excision repair gene. J. Bacteriol. 177:1995;364-371.
55. Tishkoff D.X., Amin N.S., Viars C.S., Arden K.C., Kolodner R.D. Identification of a human gene encoding a homologue of Saccharomyces cerevisiae EXO1, an exonuclease implicated in mismatch repair and recombination. Cancer Res. 58:1998;5027-5031.
56. Wilson D.M., Carney J.P., Coleman M.A., Adamson A.W., Christensen M., Lamerdin J.E. Hex1: a new human Rad2 nuclease family member with homology to yeast exonuclease 1. Nucleic Acids Res. 26:1998;3762-3768.
57. Bohr V.A., Smith C.A., Okumoto D.S., Hanawalt P.C. DNA-repair in an active gene - removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell. 40:1985;359-369.
58. Mellon I., Spivak G., Hanawalt P.C. Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell. 51:1987;241-249.
59. Yasuhira S., Morimyo M., Yasui A. Transcription dependency and the roles of two excision repair pathways for UV damage in fission yeast, Schizosaccharomyces pombe. J. Biol. Chem. 1999;. in press.
60. Muris D.F.R., Vreekan K., Carr A.M., Broughton B.C., Lehmann A.R., Lohmann P.H.M., Pastink A. Cloning the RAD51 homologue of Schizosaccharomyces pombe. Nucleic Acids Res. 21:1993;4586-4591.
61. +, a gene involved in the repair of radiation damage and replication fidelity. J. Cell Sci. 109:1996;73-81.
62. Ostermann K., Lorentz A., Schmidt H. The fission yeast rad22 gene, having a function in mating-type switching and repair of DNA damages, encodes a protein homolog to Rad52 of Saccharomyces cerevisiae. Nucleic Acids Res. 21:1993;5940-5944.
63. Merrill B.J., Holm C. The RAD52 recombinational repair pathway is essential in pol30 (PCNA) mutants that accumulate small single-stranded DNA fragments during DNA synthesis. Genetics. 148:1998;611-624.
64. Kogoma T. Recombination by replication. Cell. 85:1996;625-627.
65. Lindsay H.D., Griffiths D.J.F., Edwards R.J., Christensen P.U., Murray J.M., Osman F., Walworth N., Carr A.M. S-phase-specific activation of Cds1 kinase defines a subpathway of the checkpoint response in Schizosaccharomyces pombe. Genes Dev. 12:1998;382-395.
66. Yasui A., Eker A.P., Koken M. Existence and expression of photoreactivation repair genes in various yeast species. Mutat. Res. 217:1989;3-10.
67. Al-Khodairy F., Carr A.M. DNA repair mutants defining G2 checkpoint pathways in Schizosaccharomyces pombe. EMBO J. 11:1992;1343-1350.
68. Carr A.M., Hoekstra M.F. The cellular responses to DNA damage. Trends Cell. Biol. 5:1995;32-41.
69. Cox B.S., Parry J.M. The isolation, genetics and survival characteristics of ultraviolet light-sensitive mutants in yeast. Mutat. Res. 6:1968;37-55.
70. Fikus M.U., Mieczkowski P.A., Koprowski P., Rytka J., Sledziewska E., Ciesla Z. The DNA damage inducible gene of Saccharomyces cerevisiae DIN7 encodes the protein which specifically functions in mitochondria. Abstracts from XIX International Conference on Yeast Genetics and Molecular Biology. Current Genetics. 35:1999;351.