Dissociation of human copper-zinc superoxide dismutase dimers using chaotrope and reductant: Insights into the molecular basis for dimer stability

Journal of Biological Chemistry

Volumn 279, Issue 52, 2004, Pages 54558-54566

  Doucette, Peter A ^a   Whitson, Lisa J ^b   Cao, Xiaohang ^b   Schirf, Virgil ^b   Demeler, Borries ^b   Valentine, Joan Selverstone ^a   Hansen, Jeffrey C ^c   Hart, P John ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

^c Department of Ecosystem Science and Sustainability   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CENTRIFUGATION; CHEMICAL BONDS; CRYSTALLOGRAPHY; DIMERS; SEDIMENTATION; STABILITY; ZINC;

METAL IONS; SEDIMENTATION VELOCITY; SUPEROXIDE DISMUTASE (SOD1); TRIS(2-CARBOZYETHYL)PHOSPHINE (TCEP);

COPPER;

COPPER ZINC SUPEROXIDE DISMUTASE; CYSTEINE; DIMER; GUANIDINE; MUTANT PROTEIN; PHOSPHINE DERIVATIVE; REDUCING AGENT; SERINE; TRIS(2 CARBOXYETHYL)PHOSPHINE; UNCLASSIFIED DRUG;

ARTICLE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; CRYSTALLOGRAPHY; DISSOCIATION; DISULFIDE BOND; ENZYME STABILITY; HUMAN; MACROMOLECULE; NONHUMAN; PRIORITY JOURNAL; SEDIMENTATION;

CHEMISTRY, PHYSICAL; CRYSTALLIZATION; DIMERIZATION; DISULFIDES; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENZYME STABILITY; GUANIDINE; HUMANS; INDICATORS AND REAGENTS; MODELS, MOLECULAR; MOLECULAR STRUCTURE; OXIDATION-REDUCTION; PHOSPHINES; SUPEROXIDE DISMUTASE; ULTRACENTRIFUGATION;

EID: 11144227941     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M409744200     Document Type: Article

References (76)

1. Davies, K. J. (1995) Biochem. Soc. Symp. 61, 1-31
2. Richter, C., Gogvadze, V., Laffranchi, R., Schlapbach, R., Schweizer, M., Suter, M., Walter, P., and Yaffee, M. (1995) Biochim. Biophys. Acta 1271, 67-74
3. Meier, B., Radeke, H. H., Selle, S., Younes, M., Sies, H., Resch, K., and Habermehl, G. G. (1989) Biochem. J. 263, 539-545
4. Valentine, J. S., Wertz, D. L., Lyons, T. J., Liou, L. L., Goto, J. J., and Gralla, E. B. (1998) Curr. Opin. Chem. Biol. 2, 253-262
5. Fridovich, I. (1989) J. Biol. Chem. 264, 7761-7764
6. Valentine, J. S., and Pantoliano, M. W. (1981) in Metal Ions in Biology (Spiro, T. G., ed) Vol. 3, pp. 291-358, Wiley, New York
7. Tainer, J. A., Getzoff, E. D., Beem, K. M., Richardson, J. S., and Richardson, D. C. (1982) J. Mol. Biol. 160, 181-217
8. Kitagawa, Y., Tanaka, N., Hata, Y., Kusunoki, M., Lee, G. P., Katsube, Y., Asada, K., Aibara, S., and Monta, Y. (1991) J. Biochem. (Tokyo) 109, 477-485
9. Djinovic-Carugo, K, Battistoni, A., Carri, M. T., Polticelli, F., Desideri, A., Rotilio, G., Coda, A., Wilson, K. S., and Bolognesi, M. (1996) Acta Crystallogr. Sect. D 52, 176-188
10. Ogihara, N. L., Parge, H. E., Hart, P. J., Weiss, M. S., Goto, J. J., Crane, B. R., Tsang, J., Slater, K, Roe, J. A., Valentine, J. S., Eisenberg, D., and Tainer, J. A. (1996) Biochemistry 35, 2316-2321
11. Parge, H. E., Hallewell, R. A., and Tainer, J. A. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 6109-6113
12. Bourne, Y., Redford, S. M., Steinman, H. M., Lepock, J. R., Tainer, J. A., and Getzoff, E. D. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 12774-12779
13. Pesce, A., Capasso, C., Battistoni, A., Folcarelli, S., Rotilio, G., Desideri, A., and Bolognesi, M. (1997) J. Mol. Biol. 274, 408-420
14. Bordo, D., Matak, D., Djinovic-Carugo, K., Rosano, C., Pesce, A., Bolognesi, M., Stroppolo, M. E., Falconi, M., Battistoni, A., and Desideri, A. (1999) J. Mol. Biol. 285, 283-296
15. Ferraroni, M., Rypniewski, W., Wilson, K. S., Viezzoli, M. S., Banci, L., Bertini, I., and Mangani, S. (1999) J. Mol. Biol. 288, 413-426
16. Banci, L., Bertini, I., Cramaro, F., Del Conte, R., Rosato, A., and Viezzoli, M. S. (2000) Biochemistry 39, 9108-9118
17. Battistoni, A., and Rotilio, G. (1995) FEBS Lett. 374, 199-202
18. Battistoni, A., Folcarelli, S., Gabbianelli, R., Capo, C., and Rotilio, G. (1996) Biochem. J. 320, 713-716
19. Bertini, I., Piccioli, M., Viezzoli, M. S., Chiu, C. Y., and Mullenbach, G. T. (1994) Eur. Biophys. J. 23, 167-176
20. Banci, L., Bertini, I., Chiu, C. Y., Mullenbach, G. T., and Viezzoli, M. S. (1995) Eur. J. Biochem. 234, 855-860
21. Culotta, V. C., Klomp, L. W., Strain, J., Casareno, R. L., Krems, B., and Gitlin, J. D. (1997) J. Biol. Chem. 272, 23469-23472
22. Hall, L. T., Sanchez, R. J., Holloway, S. P., Zhu, H., Stine, J. E., Lyons, T. J., Demeler, B., Schirf, V., Hansen, J. C., Nersissian, A. M., Valentine, J. S., and Hart, P. J. (2000) Biochemistry 39, 3611-3623
23. Lamb, A. L., Torres, A. S., O'Halloran, T. V., and Rosenzweig, A. C. (2001)Nat. Struct. Biol. 8, 751-755
24. Deng, H. X., Hentati, A., Tainer, J. A., Iqbal, Z., Cayabyab, A., Hung, W. Y., Getzoff, E. D., Hu, P., Herzfeldt, B., Roos, R. P., Warner, C., Deng, G., Soriano, E., Smyth, C., Parge, H. E., Ahmed, A., Roses, A. D., Hallewell, R. A., Pericak-Vance, M. A., and Siddique, T. (1993) Science 261, 1047-1081
25. Rosen, D. R., Siddique, T., Patterson, D., Figlewicz, D. A., Sapp, P., Hentati, A., Donaldson, D., Goto, J., O'Regan, J. P., Deng, H. X., Rahmani, Z., Krizus, A., McKenna-Yasek, D., Cayabyab, A., Gaston, S. M., Berger, R., Tanzi, R. E., Halperin, J. J., Herzfeldt, B., Van den Bergh, R., Hung, W. Y., Bird, T., Deng, G., Mulder, D. W., Smyth, C., Laing, N. G., Soriano, E., Pericak-Vance, M. A., Haines, J., Rouleau, G. A., Gusella, J. S., Horvitz, H. R., and Brown, R. H., Jr. (1993) Nature 362, 59-62
26. Valentine, J. S., and Hart, P. J. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 3617-3622
27. Hart, P. J., and Valentine, J. S. (2004) in Medicinal Inorganic Chemistry (Sessler, J. L., Doctrow, S. R., McMurray, T. S., and Lippard, S. J., eds) ACS Books, Washington, D. C., in press
28. Shibata, N., Hirano, A., Kobayashi, M., Siddique, T., Deng, H. X., Hung, W. Y., Kato, T., and Asayama, K (1996) J. Neuropathol. Exp. Neurol. 55, 481-490
29. Bruijn, L. I., Houseweart, M. K., Kato, S., Anderson, K. L., Anderson, S. D., Ohama, E., Reaume, A. G., Scott, R. W., and Cleveland, D. W. (1998) Science 281, 1851-1854
30. Wang, J., Xu, G., Gonzales, V., Coonfield, M., Fromholt, D., Copeland, N. G., Jenkins, N. A., and Borchelt, D. R. (2002) Neurobiol. Dis. 10, 128-138
31. Fridovich, I., and Goscin, S. A. (1972) Arch. Biochem. Biophys. 153, 778-783
32. Fridovich, I., and Misra, H. P. (1972) J. Biol. Chem. 247, 6960-6962
33. Hartz, J. W., and Deutsch, H. F. (1972) J. Biol. Chem. 247, 7043-7050
34. Forman, H. J., and Fridovich, I. (1973) J. Biol. Chem. 248, 2645-2649
35. Beauchamp, C. O., and Fridovich, I. (1973) Biochim. Biophys. Acta 317, 50-64
36. Abernethy, J. L., Steinman, H. M., and Hill, R. L. (1974) J. Biol. Chem. 249, 7339-7347
37. Marmocchi, F., Venardi, G., Caulini, G., and Rotilio, G. (1974) FEBS Lett. 44, 337-339
38. Marmocchi, F., Caulini, G., Cocco, D., Calabrese, L., and Rotilio, G. (1975) Physiol. Chem. Phys. 7, 465-471
39. Bannister, J. V., Anastasi, A., and Bannister, W. H. (1978) Biochem. Biophys. Res. Commun. 81, 469-472
40. Marmocchi, F., Venardi, G., Bossa, F., Rigo, A., and Rotilio, G. (1978) FEBS Lett. 94, 109-111
41. Rigo, A., Marmocchi, F., Cocco, D., Viglino, P., and Rotilio, G. (1978) Biochemistry 17, 534-537
42. Malinowski, D. P., and Fridovich, I. (1979) Biochemistry 18, 5055-5060
43. Mei, G., Rosato, N., Silva, N., Rusch, R., Gratton, E., Savini, I., and Finazzi-Agro, A. (1992) Biochemistry 31, 7224-7230
44. Silva, N., Jr., Gratton, E., Mei, G., Rosato, N., Rusch, R., and Finazzi-Agro, A. (1993) Biophys. Chem. 48, 171-182
45. Inouye, K, Osaki, A., and Tonomura, B. (1994) J. Biochem. 115, 507-515
46. Hayward, L. J., Rodriguez, J. A., Kim, J. W., Tiwari, A., Goto, J. J., Cabelli, D. E., Valentine, J. S., and Brown, R. H., Jr. (2002) J. Biol. Chem. 277, 15923-15931
47. Rodriguez, J. A., Valentine, J. S., Eggers, D. K., Roe, J. A., Tiwari, A., Brown, R. H., Jr., and Hayward, L. J. (2002) J. Biol. Chem. 277, 15932-15937
48. Tiwari, A., and Hayward, L. J. (2003) J. Biol. Chem. 278, 5984-5992
49. Doucette, P. A. (2004) Biophysical Studies of Human Copper-Zinc Superoxide Dismutase and Mutants Associated with the Neurodegenerative Disease Amyotrophic Lateral Sclerosis. Ph.D. dissertation, Department of Chemistry and Biochemistry, University of California at Los Angeles, CA
50. Hough, M. A., Grossmann, J. G., Antonyuk, S. V., Strange, R. W., Doucette, P. A., Rodriguez, J. A., Whitson, L. J., Hart, P. J., Hayward, L. J., Valentine, J. S., and Hasnain, S. S. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 5976-5981
51. Wiedau-Pazos, M., Goto, J. J., Rabizadeh, S., Gralla, E. B., Roe, J. A., Lee, M. K., Valentine, J. S., and Bredesen, D. E. (1996) Science 271, 515-518
52. Rabizadeh, S., Gralla, E. B., Borchelt, D. R., Gwinn, R., Valentine, J. S., Sisodia, S., Wong, P., Lee, M., Hahn, H., and Bredesen, D. E. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 3024-3028
53. Carrico, R. J., and Deutsch, H. F. (1970) J. Biol. Chem. 245, 723-727
54. Fee, J. A. (1973) J. Biol. Chem. 248, 4229-4234
55. Laue, T. M., Shah, B. D., Ridgeway, T. M., and Pelletier, S. L. (1992) in Analytical Ultracentrifugation in Biochemistry and Polymer Science (Harding, S. E., Rowe, A. J., and Horton, J. C., eds) pp. 90-125, Royal Society of Chemistry, Cambridge
56. Demeler, B. (2004) UltraScan Software, University of Texas Health Science Center at San Antonio, Department of Biochemistry, www/ultrascan.uthscsa.edu
57. Cohn, E. J., and Edsall, J. T. (1943) Proteins, Amino Acids and Peptides as Ions and Dipola Ions, p. 157, Reinhold, New York
58. van Holde, K. E., and Weischet, W. O. (1978) Biopolymers 17, 1387-1403
59. Demeler, B., Saber, H., and Hansen, J. C. (1997) Biophys. J. 72, 397-407
60. Cole, J. L., and Hansen, J. C. (1999) J. Biomol. Tech. 10, 163-176
61. Garcia De La Torre, J., Huertas, M. L., and Carrasco, B. (2000) Biophys. J. 78, 719-730
62. Strange, R. W., Antonyuk, S., Hough, M. A., Doucette, P. A., Rodriguez, J. A., Hart, P. J., Hayward, L. J., Valentine, J. S., and Hasnain, S. S. (2003) J. Mol. Biol. 328, 877-891
63. Russell, T. R., Demeler, B., and Tu, S. C. (2004) Biochemistry 43, 1580-1590
64. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
65. Esnouf, R. M. (1999) Acta Crystallogr. Sect. D 55, 938-940
66. Hansen, J. C., Lebowitz, J., and Demeler, B. (1994) Biochemistry 33, 13155-13163
67. Stroppolo, M. E., Arcangeli, C., Bizzarri, A. R., Desideri, A., Cannistraro, S., and Guzzi, R. (1999) Eur. Biophys. J. 28, 447-456
68. Elam, J. S., Taylor, A. B., Strange, R., Antonyuk, A., Doucette, P. A., Rodriguez, J. A., Hasnain, S. S., Hayward, L. J., Valentine, J. S., Yeates, T. O., and Hart, P. J. (2003) Nat. Struct. Biol. 10, 461-467
69. Banci, L., Benedeto, M., Bertini, I., Del Conte, R., Piccioli, M., and Viezzoli, M. (1998) Biochemistry 37, 11780-11791
70. Banci, L., Bertini, I., Cantini, F., D'Onofrio, M., and Viezzoli, M. S. (2002) Prot. Sci. 11, 2479-2492
71. Burns, J., Butler, J., Moran, J., and Whitesides, G. (1991) J. Org. Chem. 56, 2648-2650
72. Han, G. Y., and Gray, W. R. (1994) Anal. Biochem. 220, 5-10
73. Getz, E., Xiao, M., Chakrabarty, T., Cooke, R., and Selvin, P. (1999) Anal. Biochem. 273, 73-80
74. Furukawa, Y., Torres, A. S., and O'Halloran, T. V. (2004) EMBO J. 23, 2872-2881
75. Rakhit, R., Crow, J. P., Lepock, J. R., Kondejewski, L. H., Cashman, N. R., and Chakrabartty, A. (2004) J. Biol. Chem. 279, 15499-15504
76. Getzoff, E. D., Tainer, J. A., Weiner, P. K., Kollman, P. A., Richardson, J. S., and Richardson, D. C. (1983) Nature 306, 287-290