Three-dimensional structure of Xenopus laevis Cu,Zn superoxide dismutase b determined by X-ray crystallography at 1.5 Å resolution

Acta Crystallographica Section D: Biological Crystallography

Volumn 52, Issue 1, 1996, Pages 176-188

  Carugo, Kristina Djinović ^a,f   Battistoni, Andrea ^a   Carrì, Maria Teresa ^b   Polticelli, Fabio ^b   Desideri, Alessandro ^c   Rotilio, Giuseppe ^b   Coda, Alessandro ^a   Wilson, Keith S ^d   Bolognesi, Martino ^a,e  

^a UNIVERSITY OF PAVIA   (Italy)

^b UNIVERSITY OF ROME TOR VERGATA   (Italy)

^c UNIVERSITY OF MESSINA   (Italy)

^d EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^e UNIVERSITY OF GENOA   (Italy)

^f EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COPPER; SUPEROXIDE DISMUTASE; ZINC;

X RAY; X RAY CRYSTALLOGRAPHY; XENOPUS LAEVIS;

XENOPUS LAEVIS;

EID: 0030040864     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/s0907444995007608     Document Type: Article

References (63)

1. Argese, E., Viglino, P., Rotilio, G., Scarpa, M. & Rigo, A. (1987). Biochemistry, 26, 3224-3228.
2. Amdt, U. W. & Wonacott, A. J. (1977). The Rotation Method in Crystallography. Amsterdam: North-Holland.
3. Banci, L., Bertini, I., Bruni, B., Carloni, P., Luchinat, C., Mangani, S., Orioli, P., Piccioli, M., Ripniewski, W. & Wilson, K. S. (1994). Biochem. Biophys. Res. Commun. 202, 1088-1095.
4. Banci, L., Bertini, I., Luchinat, C., Monnani, R. & Scozzafava, A. (1988). Inorg. Chem. 27, 107-109.
5. Bannister, W. H., Bannister, J., Barra, D., Bond, J. & Bossa, F. (1991). Free Rad. Res. Commun. 12-13, 349-361.
6. Battistoni, A., Carrì, M. T., Mazzetti, P. & Rotilio, G. (1992). Biochem. Biophys. Res. Commun. 186, 1339-1344.
7. Beyer, W. F., Fridovich, I., Mullenbach, G. T. & Hallewell, R. A. (1987). J. Biol. Chem. 262, 11182-11187.
8. Bisbee, A., Beaker, M. A., Wilson, A. C., Hadji-Azini, I. & Fishberg, M. (1977). Science, 195, 785-787.
9. Blackburn, N. J., Strange, R. W., McFadden, L. M. & Hasnain, S. S. (1987). J. Am. Chem. Soc. 109, 7162-7170.
10. Bordo, D., Djinović, K. & Bolognesi, M. (1994). J. Mol. Biol. 238, 366-386.
11. Brünger, A. T. (1992a). X-PLOR Manual. Version 3.0. Yale University, New Haven, CT, USA.
12. Brünger, A. T. (1992b). Nature (London), 355, 472-475.
13. Capo, C. R., Polticelli, F., Calabrese, L., Schininà, M. E., Carrì, M. T. & Rotilio, G. (1990). Biochem. Biophys. Res. Commun. 173, 1186-1193.
14. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
15. Cudd, A. & Fridovich, I. (1982). J. Biol. Chem. 257, 11443-11447.
16. Desideri, A., Falconi, M., Polticelli, F., Bolognesi, M., Djinović, K. & Rotilio, G. (1992). J. Mol. Biol. 223, 337-342.
17. Djinović, K., Coda, A., Antolini, L., Pelosi, G., Desideri, A., Falconi, M., Rotilio, G. & Bolognesi, M. (1992). J. Mol. Biol. 226, 227-238.
18. Djinović, K., Gatti, G., Coda, A., Antolini, L., Pelosi, G., Desideri, A., Falconi, M., Marmocchi, F., Rotilio, G. & Bolognesi, M. (1992). J. Mol. Biol. 225, 791-809.
19. Djinović Carugo, K., Battistoni, A., Carrì, M. T., Polticelli, F., Desideri, A., Rotilio, G., Coda, A. & Bolognesi, M. (1994). FEBS Lett. 349, 93-98.
20. Djinović Carugo, K., Collyer, C., Coda, A., Carrì, M. T., Battistoni, A., Bottaro, G., Polticelli, F., Desideri, A. & Bolognesi, M. (1993). Biochem. Biophys. Res. Commun. 194, 1008-1011.
21. Engh, R. A. & Huber, R. (1991). Acta Cryst. A47, 392-400.
22. Fielden, E. M., Roberts, P. B., Bray, R. C., Lowe, D. J., Mautner, G. N., Rotilio, G. & Calabrese, L. (1974). Biochem. J. 139, 49-60.
23. Fisher, C. L., Tainer, J. A., Pique, M. E. & Getzoff, E. D. (1990). J. Mol. Graphics, 8, 125-132.
24. French, S. & Wilson, K. S. (1978). Acta Cryst. A34, 517-525.
25. Fridovich, I. (1986). Adv. Enzymol. 58, 61-97.
26. Getzoff, E. D., Cabelli, D. E., Fisher, C. L., Parge, H. E., Viezzoli, M. S., Banci, L. & Hallewell, R. A. (1992). Nature (London), 358, 347-351.
27. Getzoff, E. D., Tainer, J. A., Stempien, M. M., Bell, G. I. & Hallewell, R. A. (1989). Proteins, 5, 322-336.
28. Getzoff, E. D., Tainer, J. A., Weiner, P. K., Kollman, P. A., Richardson, J. & Richardson, D. C. (1983). Nature (London), 306, 287-290.
29. Halliwell, B. & Gutteridge, J. M. (1989). Free Radicals in Biology and Medicine, pp. 22-408. Oxford: Clarendon Press.
30. Hamilton, W. C. (1965). Acta Cryst. 18, 502-510.
31. Hutchinson, E. G. & Thornton, J. M. (1993). Protein Eng. 6, 233-245.
32. Jones, T. A. (1978). J. Appl. Cryst. 11, 268-272.
33. Kabsch, W. & Sander, C. (1983). Biopolymers, 22, 2577-2637.
34. Kitagawa, Y., Tanaka, N., Hata, Y., Kusonoki, M., Lee, G., Katsube, Y., Asada, K., Aibara, S. & Morita, Y. (1991). J. Biochem. 109, 447-485.
35. Konnert, J. H. & Hendrickson, W. A. (1980). Acta Cryst. A36, 344-350.
36. Kuhn, L. A., Siani, M. A., Pique, M. E., Fisher, C. L., Getzoff, E. D. & Tainer, J. A. (1992). J. Mol. Biol. 202, 637-657.
37. Lamzin, V. S. & Wilson, K. S. (1993). Acta Cryst. D49, 129-147.
38. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 282-291.
39. Lepock, J. R., Frey, H. E. & Hallewell, R. A. (1990). J. Biol. Chem. 265, 21612-21618.
40. Leslie, A. G. W. (1986). Daresbury Lab. Inf. Q. Prog. Crystallogr. Vol. 18, pp. 33-39. Warrington, England: Daresbury Laboratory.
41. McRee, D. E., Redford, S., Getzoff, E., Lepock, J. R., Hallewell, R. A. & Tainer, J. (1990). J. Biol. Chem. 244, 14234-14241.
42. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
43. O'Neill, P., Davies, S., Fielden, E. M., Calabrese, L., Capo, C., Marmocchi, F., Natoli, G. & Rotilio, G. (1988). Biochem. J. 251, 41-46.
44. Orpen, A. G., Brammer, L., Allen, F. H., Kennard, O., Watson, D. & Taylor, R. (1989). J. Chem. Soc. Dalton Trans. pp. S1-S83.
45. Parge, H. E., Hallewell, R. A. & Tainer, J. A. (1992). Proc. Natl Acad. Sci. USA, 89, 6109-6113.
46. Parker, M. W. & Blake, C. C. F. (1988). J. Mol. Biol. 199, 649-661.
47. Polticelli, F., Battistoni, A., Bottaro, G., Carrì, M. T., O'Neill, P., Desideri, A. & Rotilio, G. (1996). FEBS Lett. In the press.
48. Polticelli, F., Bottaro, G., Battistoni, A., Carrì, M. T., Djinović Carugo, K., Bolognesi, M., O'Neill, P., Rotilio, G. & Desideri, F. (1995). Biochemistry, 6034-6049.
49. Polticelli, F., Falconi, M., O'Neill, P., Petruzzelli, R., Galtieri, A., Lania, A., Calabrese, L., Rotilio, G. & Desideri, A. (1994). Arch. Biochem. Biophys. 312, 22-30.
50. Priestle, J. P. (1988). J. Appl. Cryst. 21, 572-576.
51. Ramakrishnan, C. & Ramachandran, G. N. (1965). Biophys. J. 5, 909-933.
52. Read, R. J. (1986). Acta Cryst. A42, 140-149.
53. Roe, J. A., Butler, A., Scholler, D. M., Valentine, J. S., Marky, L. & Breslauer, K. J. (1988). Biochemistry, 27, 950-958.
54. Schininà, M. E., Barra, D., Bossa, F., Calabrese, L., Montesaro, L., Carrì, M. T., Matiottini, P., Amaldi, F. & Rotilio, G. (1989). Arch. Bioch. Biophys. 272, 507-515.
55. Sergi, A., Ferrario, M., Polticelli, F., O'Neill, P. & Desideri, A. (1996). J. Phys. Chem. In the press.
56. Sheldrick, G. M. (1993). SHELXL93. University of Göttingen, Germany.
57. Simurda, M. C., van Keulen, H., Rekosh, D. M. & Lo Verde, P. T. (1988). Exp. Parasitol. 67, 73-84.
58. Sines, J. J., Allison, S. A. & McCammon, J. A. (1990). Biochemistry, 29, 9403-9412.
59. Stallings, W. C., Pattridge, K. A., Strong, R. K., Ludwig, M. L., Yamakura, F., Isobe, T. & Steinman, H. M. (1987). Active Site Homology in Iron and Manganese Superoxide Dismutase, in Pallerson and Pattersons, edited by J. P. Glusker, B. K. Patterson & M. Rossi, pp. 505-513. Oxford University Press.
60. Stellwagen, E. & Wilgus, H. (1978). Biochemistry of Thermophyl, edited by S. Friedman, pp. 223-232. Orlando: Academic Press.
61. Tainer, J. A., Getzoff, E. D., Beem, K. M., Richardson, J. S. & Richardson, D. C. (1982). J. Mol. Biol. 160, 181-217.
62. Tegelstrom, H. (1975). Hereditas, 81, 185-198.
63. Tilton, R. F., Dewan, J. C. & Petsko, G. A. (1992). Biochemistry, 31, 2469-2481.