EPR spectroscopic characterization of the manganese center and a free radical in the oxalate decarboxylase reaction: Identification of a tyrosyl radical during turnover

Journal of Biological Chemistry

Volumn 279, Issue 51, 2004, Pages 52840-52849

  Chang, Christopher H ^a   Svedružić, Draẑenka ^a   Ozarowski, Andrzej ^a,c   Walker, Lee ^a,d   Yeagle, Gregory ^b   Britt, R David ^b   Angerhofer, Alexander ^a   Richards, Nigel G J ^a  

^a University of Florida ^*  (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c FLORIDA STATE UNIVERSITY   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRON SPIN RESONANCE SPECTROSCOPY; ENZYMES; MANGANESE; MUTAGENESIS; OXIDATION;

BACILLUS SUBTILIS; MOLECULAR MECHANISMS; PARALLEL MODES;

BIOCHEMISTRY;

BACTERIAL ENZYME; CARBOXYLYASE; FREE RADICAL; ISOTOPE; MANGANESE; METAL; OXALATE DECARBOXYLASE; OXALIC ACID DERIVATIVE; OXYGEN; TYROSINE; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; ELECTRON SPIN RESONANCE; GEOMETRY; HIGH TEMPERATURE; POLARIZATION; PRIORITY JOURNAL; SIMULATION; STEADY STATE;

BACILLUS SUBTILIS; BINDING SITES; CARBOXY-LYASES; CATALYSIS; ELECTRON SPIN RESONANCE SPECTROSCOPY; FREE RADICALS; FREEZING; IONS; ISOTOPES; KINETICS; MAGNETICS; MANGANESE; MASS SPECTROMETRY; MODELS, CHEMICAL; MODELS, THEORETICAL; MUTAGENESIS, SITE-DIRECTED; OXALATES; OXALIC ACID; OXYGEN; SPECTROPHOTOMETRY; TEMPERATURE; TIME FACTORS; TRYPSIN; TYROSINE;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 11144220822     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M402345200     Document Type: Article

References (58)

1. Tanner, A., and Bornemann, S. (2000) J. Bacteriol. 182, 5271-5273
2. Tanner, A., Bowater, L., Fairhurst, S. A., and Bornemann, S. (2001) J. Biol. Chem. 276, 43627-43634
3. Anand, R., Dorrestein, P. C., Kinsland, C., Begley, T. P., and Ealick, S. E. (2002) Biochemistry 41, 7659-7669
4. Reinhardt, L. A., Svedruzic, D., Chang, C. H., Cleland, W. W., and Richards, N. G. J. (2003) J. Am. Chem. Soc. 125, 1244-1252
5. Dunwell, J. M. (1998) Biotechnol. Genet. Engin. Rev. 15, 1-32
6. Stellings, W. C., Pattridge, K. A., Strong, R. K., and Ludwig, M. L. (1985) J. Biol. Chem. 260, 16424-16432
7. Kolbe, H. (1849) Ann. Chem. 69, 257-294
8. Vijh, A. K., and Conway, B. E. (1967) Chem. Rev. 67, 623-644
9. Borodine, A. (1861) Ann. Chem. 119, 121-123
10. Hunsdiecker, H., and Hunsdiecker, C. (1942) Chem. Ber. 75, 291-297
11. Johnson, R. G., and Ingham, R. K. (1956) Chem. Rev. 56, 219-269
12. Lowry, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 265-275
13. Kim, H. W., Perez, J. A., Ferguson, S. J., and Campbell, I. D. (1990) FEBS Lett. 272, 34-36
14. Glasoe, P. K., and Long, F. A. (1960) J. Phys. Chem. 64, 188-190
15. Stoll, S. (2003) Spectral Simulations in Solid-state EPR. Ph.D. thesis, Eidgenössische Technische Hochschule, Zürich
16. Mendes, P. (1993) Comput. Appl. Biosci. 9, 563-571
17. Mendes, P. (1997) Trends Biochem. Sci. 22, 361-363
18. Mendes, P., and Kell, D. B. (1998) Bioinformatics 14, 869-883
19. Reed, G. H., and Ballinger, M. D. (1995) Methods Enzymol. 258, 362-379
20. Rupp, M., Rao, K. K., Hall, D. O., and Cammack, R. (1978) Biochim. Biophys. Acta 537, 255-269
21. Padmakumar, R., and Banenee, R. (1995) J. Biol. Chem. 270, 9295-9300
22. van der Donk, W. A., Yu, G., Pérez, L., Sanchez, R. J., Stubbe, J., Samano, V., and Robins, M. J. (1998) Biochemistry 37, 6419-6426
23. Whiting, A. K., Boldt, Y. R., Hendrich, M. P., Wackett, L. P., and Que, L. J. (1996) Biochemistry 35, 160-170
24. Abragam, A., and Bleaney, B. (1970) Electron Paramagnetic Resonance of Transition Metal Ions, pp. 454 and 518, Clarendon Press, Oxford
25. Reed, G. H., and Markham, G. D. (1984) in Biological Magnetic Resonance (Berliner, L. J., and Reuben, J., eds) Vol. 6, pp. 73-142, Plenum Press, New York
26. Morrissey, S. R., Horton, T. E., and DeRose, V. J. (2000) J. Am. Chem. Soc. 122, 3473-3481
27. Vogt, M., and DeRose, V. J. (2003) in Paramagnetic Resonance of Metallobiomolecules (Telser, J., ed) Vol. 858, pp. 193-211, Oxford University Press, Washington, D. C.
28. Campbell, K. A., Lashley, M. R., Wyatt, J. K., Nantz, M. H., and Britt, R. D. (2001) J. Am. Chem. Soc. 123, 5710-5719
29. Krzystek, J., Yeagle, G. J., Park, J.-H., Britt, R. D., Meisel, M. W., Brunel, L.-C., and Telser, J. (2003) Inorg. Chem. 42, 4610-4618
30. Campbell, K. A., Yikilmaz, E., Grant, C. V., Gregor, W., Miller, A.-F., and Britt, R. D. (1999) J. Am. Chem. Soc. 121, 4714-4715
31. Rogers, P. A., and Ding, H. (2001) J. Biol. Chem. 276, 30980-30986
32. Weil, J. A., Bolton, J. R., and Wertz, J. E. (1994) Electron Paramagnetic Resonance: Elementary Theory and Practical Applications, pp. 321-323, Wiley-Interscience, New York
33. Tommos, C., Tang, X.-S., Warncke, K., Hoganson, C. W., Styring, S., McCracken, J., Diner, B. A., and Babcock, G. T. (1995) J. Am. Chem. Soc. 117, 10325-10335
34. Whittaker, M. M., and Whittaker, J. W. (2002) J. Biol. Inorg. Chem. 7, 136-145
35. Kessissoglou, D. P., Li, X. Butler, W. M., and Pecoraro, V. L. (1987) Inorg. Chem. 26, 2487-2492
36. Chandra, S. K., Basu, P., Ray, D., Pal, S., and Chakravorty, A. (1990) Inorg. Chem. 29, 2423-2428
37. Adam, W., Mock-Knoblauch, C., Saha-Moller, C. R., and Herderich, M. (2000) J. Am. Chem. Soc. 122, 9685-9691
38. Weyhermuller, T., Paine, T. K., Bothe, E., Bill, E., and Chaudhuri, P. (2002) Inorg. Chim. Acta 337, 344-356
39. Rajendiran, T. M., Kampf, J. W., and Pecoraro, V. L. (2002) Inorg. Chim. Acta 339, 497-502
40. Lide, D. R. CRC Handbook of Chemistry and Physics (1998-1999) 79th Ed., pp. (5-85)-(85-88), CRC Press, Boca Raton, FL
41. Yanez, J., Sevilla, C. L., Becker, D., and Sevilla, M. D. (1987) J. Phys. Chem. 91, 487-491
42. Sristunenko, D. (2001) Biochim. Biophys. Acta 1546, 365-378
43. Wagner, A. F. V., Frey, M., Neugebauer, F. A., Schäfer, W., and Knappe, J. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 996-1000
44. Lassmann, G., Kolberg, M., Bleifuss, G., Gräslund, A., SJöberg, B.-M., and Lubitz, W. (2003) Phys. Chem. Chem. Phys. 5, 2442-2453
45. Lendzian, F., Sahlin, M., MacMillan, F., Bittl, R., Fiege, R., Putsch, S., Sjöberg, B.-M., Gräslund, A., Lubitz, W., and Lassmann, G. (1996) J. Am. Chem. Soc. 118, 8111-8120
46. Katterle, B., Sahlin, M., Schmidt, P. P., Pötsch, S., Logan, D. T., Gräslund, A., and Sjöberg, B.-M. (1997) J. Biol. Chem. 272, 10414-10421
47. Reddy, S. G., Wong, K. K., Parast, C. V., Peisach, J., Magliozzo, R. S., and Kozarich, J. W. (1998) Biochemistry 37, 558-563
48. Adrait, A., Öhrström, M., Barra, A.-L., Thelander, L., and Gräslund, A. (2002) Biochemistry 41, 6510-6516
49. Stubbe, J., and van der Donk, W. A. (1998) Chem. Rev. 98, 705-762
50. Ehrenberg, A., and Reichard, P. (1972) J. Biol. Chem. 247, 3485-3488
51. Tsai, A.-L., and Kulmacz, R. J. (2000) Prostag. Others Lipid M. 62, 231-254
52. Barry, B. A., El-Deeb, M. K., Sandusky, P. O., and Babcock, G. T. (1990) J. Biol. Chem. 265, 20139-20143
53. Gerfen, G. J., van der Donk, W. A., Yu, G., McCarthy, J. R., Jarvi, E. T., Matthews, D. P., Farrar, C., Griffin, R. G., and Stubbe, J. (1998) J. Am. Chem. Soc. 120, 3823-3835
54. Chen-Barrett, Y., Harrison, P. M., Treffry, A., Quail, M. A., Arosio, P., Santambrogio, P., and Chasteen, N. D. (1995) Biochemistry 34, 7847-7853
55. Stubbe, J., Nocera, D. G., Yee, C. S., and Chang, M. C. Y. (2003) Chem. Rev. 103, 2167-2201
56. Sun, X., Ollagnier, S., Schmidt, P. P., Atta, M., Mulliez, E., Lepape, L., Eliasson, R., Gräslund, A., Fontecave, M., Reichard, P., and Sjöberg, B.-M. (1996) J. Biol. Chem. 271, 6827-6831
57. Parast, C. V., Wong, K. K., and Kozarich, J. W. (1995) Biochemistry 34, 5712-5717
58. van der Donk, W. A., Stubbe, J., Gerfen, G. J., Bellew, B. F., and Griffin, R. G. (1995) J. Am. Chem. Soc. 117, 8908-8916