-
1
-
-
0041350475
-
In situ distribution and activity of nitrifying bacteria in freshwater sediment
-
Altmann, D., P. Stief, R. Amann, D. de Beer, and A. Schramm. 2003. In situ distribution and activity of nitrifying bacteria in freshwater sediment. Environ. Microbiol. 5:798-803.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 798-803
-
-
Altmann, D.1
Stief, P.2
Amann, R.3
De Beer, D.4
Schramm, A.5
-
2
-
-
0033774937
-
A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard, A. E., and K. G. Field. 2000. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl. Environ. Microbiol. 66:4571-4574.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
3
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
4
-
-
0031789907
-
Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
-
Fuchs, B. M., G. Wallner, W. Beisker, I. Schwippl, W. Ludwig, and R. Amann. 1998. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 64:4973-4982.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4973-4982
-
-
Fuchs, B.M.1
Wallner, G.2
Beisker, W.3
Schwippl, I.4
Ludwig, W.5
Amann, R.6
-
5
-
-
0034548858
-
Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques
-
Fuchs, B. M., M. V. Zubkov, K. Sahm, P. H. Burkill, and R. Amann. 2000. Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques. Environ. Microbiol. 2:191-201.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 191-201
-
-
Fuchs, B.M.1
Zubkov, M.V.2
Sahm, K.3
Burkill, P.H.4
Amann, R.5
-
6
-
-
0342445436
-
Benthic metabolism and nutrient cycling along an estuarine salinity gradient
-
Hopkinson, C. S. J., A. E. Giblin, J. Tucker, and R. H. Garritt. 1999. Benthic metabolism and nutrient cycling along an estuarine salinity gradient. Estuaries 22:863-881.
-
(1999)
Estuaries
, vol.22
, pp. 863-881
-
-
Hopkinson, C.S.J.1
Giblin, A.E.2
Tucker, J.3
Garritt, R.H.4
-
7
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180:4765-4774.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 4765-4774
-
-
Hugenholtz, P.1
Goebel, B.M.2
Pace, N.R.3
-
8
-
-
0035409593
-
Congruent phylogenies of most common small-subunit rRNA and dissimilatory sulfite reductase gene sequences retrieved from estuarine sediments
-
Joulian, C., N. B. Ramsing, and K. Ingvorsen. 2001. Congruent phylogenies of most common small-subunit rRNA and dissimilatory sulfite reductase gene sequences retrieved from estuarine sediments. Appl. Environ. Microbiol. 67:3314-3318.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3314-3318
-
-
Joulian, C.1
Ramsing, N.B.2
Ingvorsen, K.3
-
9
-
-
0036207009
-
The ecology of Cytophaga-Flavobacteria in aquatic environments
-
Kirchman, D. L. 2002. The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol. Ecol. 39:91-100.
-
(2002)
FEMS Microbiol. Ecol.
, vol.39
, pp. 91-100
-
-
Kirchman, D.L.1
-
10
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (ed.), John Wiley and Sons, New York, N.Y.
-
Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, N.Y.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
11
-
-
0031895203
-
Bacterial phylogeny based on comparative sequence analysis
-
Ludwig, W., O. Strunk, S. Klugbauer, N. Klugbauer, M. Weizenegger, J. Neumaier, M. Bachleitner, and K.-H. Schleifer. 1998. Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19:554-568.
-
(1998)
Electrophoresis
, vol.19
, pp. 554-568
-
-
Ludwig, W.1
Strunk, O.2
Klugbauer, S.3
Klugbauer, N.4
Weizenegger, M.5
Neumaier, J.6
Bachleitner, M.7
Schleifer, K.-H.8
-
12
-
-
9344247522
-
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
-
Manx, W., R. Amann, W. Ludwig, M. Vancanneyt, and K.-H. Schleifer. 1996. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology 142:1097-1106.
-
(1996)
Microbiology
, vol.142
, pp. 1097-1106
-
-
Manx, W.1
Amann, R.2
Ludwig, W.3
Vancanneyt, M.4
Schleifer, K.-H.5
-
13
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
-
Manx, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15:593-600.
-
(1992)
Syst. Appl. Microbiol.
, vol.15
, pp. 593-600
-
-
Manx, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.-H.5
-
14
-
-
0029097821
-
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Muyrer, G., A. Teske, C. O. Wirsen, and H. W. Jannasch. 1995. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164:165-172.
-
(1995)
Arch. Microbiol.
, vol.164
, pp. 165-172
-
-
Muyrer, G.1
Teske, A.2
Wirsen, C.O.3
Jannasch, H.W.4
-
15
-
-
0036793715
-
Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA
-
Nogales, B., K. N. Timmis, D. B. Nedwell, and A. M. Osborn. 2002. Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Appl. Environ. Microbiol. 68:5017-5025.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5017-5025
-
-
Nogales, B.1
Timmis, K.N.2
Nedwell, D.B.3
Osborn, A.M.4
-
16
-
-
0022462668
-
Microbial ecology and evolution: A ribosomal RNA approach
-
Olsen, G. J., D. J. Lane, S. J. Giovannoni, N. R. Pace, and D. A. Stahl. 1986. Microbial ecology and evolution: a ribosomal RNA approach. Annu. Rev. Microbiol. 40:337-365.
-
(1986)
Annu. Rev. Microbiol.
, vol.40
, pp. 337-365
-
-
Olsen, G.J.1
Lane, D.J.2
Giovannoni, S.J.3
Pace, N.R.4
Stahl, D.A.5
-
17
-
-
0142104329
-
Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice
-
Ouverney, C. C., G. C. Armitage, and D. A. Relman. 2003. Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice. Appl. Environ. Microbiol. 69:6294-6298.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 6294-6298
-
-
Ouverney, C.C.1
Armitage, G.C.2
Relman, D.A.3
-
18
-
-
0030982247
-
A molecular view of microbial diversity and the biosphere
-
Pace, N. R. 1997. A molecular view of microbial diversity and the biosphere. Science 276:734-740.
-
(1997)
Science
, vol.276
, pp. 734-740
-
-
Pace, N.R.1
-
19
-
-
33751536386
-
Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
-
Pernthaler, J., F. O. Glöckner, W. Schönhuber, and R. Amann. 2001. Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Methods Microbiol. 30:207-226.
-
(2001)
Methods Microbiol.
, vol.30
, pp. 207-226
-
-
Pernthaler, J.1
Glöckner, F.O.2
Schönhuber, W.3
Amann, R.4
-
20
-
-
0034466757
-
Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
-
Purkhold, U., A. Pommerening-Röser, S. Juretschko, M. C. Schmidt, H.-P. Koops, and M. Wagner. 2000. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl. Environ. Microbiol. 66: 5368-5382.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 5368-5382
-
-
Purkhold, U.1
Pommerening-Röser, A.2
Juretschko, S.3
Schmidt, M.C.4
Koops, H.-P.5
Wagner, M.6
-
21
-
-
0032863408
-
High bacterial diversity in permanently cold marine sediments
-
Ravenschlag, K., K. Sahm, J. Pernthaler, and R. Amann. 1999. High bacterial diversity in permanently cold marine sediments. Appl. Environ. Microbiol. 65:3982-3989.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3982-3989
-
-
Ravenschlag, K.1
Sahm, K.2
Pernthaler, J.3
Amann, R.4
-
22
-
-
0028172253
-
In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides
-
Roller, C., M. Wagner, R. Amann, W. Ludwig, and K.-H. Schleifer. 1994. In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides. Microbiology 140:2849-2858.
-
(1994)
Microbiology
, vol.140
, pp. 2849-2858
-
-
Roller, C.1
Wagner, M.2
Amann, R.3
Ludwig, W.4
Schleifer, K.-H.5
-
23
-
-
0034940124
-
Structure and diversity of Gram-negative sulfate-reducing bacteria on rice roots
-
Scheid, D., and S. Stubner. 2001. Structure and diversity of Gram-negative sulfate-reducing bacteria on rice roots. FEMS Microbiol. Ecol. 36:175-183.
-
(2001)
FEMS Microbiol. Ecol.
, vol.36
, pp. 175-183
-
-
Scheid, D.1
Stubner, S.2
-
24
-
-
18744372991
-
Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries
-
Schramm, A., B. M. Fuchs, J. L. Nielsen, M. Tonolla, and D. A. Stahl. 2002. Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries. Environ. Microbiol. 4:713-720.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 713-720
-
-
Schramm, A.1
Fuchs, B.M.2
Nielsen, J.L.3
Tonolla, M.4
Stahl, D.A.5
-
26
-
-
0038220917
-
Optimization of single-base-pair mismatch discrimination on oligonucleotide microarrays
-
Urakawa, H. S., S. El Fantroussi, E. H. Tribou, H. Smidt, J. C. Smoot, J. J. Kelly, P. A. Noble, and D. A. Stahl. 2003. Optimization of single-base-pair mismatch discrimination on oligonucleotide microarrays. Appl. Environ. Microbiol. 69:2848-2856.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2848-2856
-
-
Urakawa, H.S.1
El Fantroussi, S.2
Tribou, E.H.3
Smidt, H.4
Smoot, J.C.5
Kelly, J.J.6
Noble, P.A.7
Stahl, D.A.8
-
27
-
-
0030678621
-
Flow sorting of microorganisms for molecular analysis
-
Wallner, G., B. Fuchs, S. Spring, W. Beisker, and R. Amann. 1997. Flow sorting of microorganisms for molecular analysis. Appl. Environ. Microbiol. 63:4223-4231.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4223-4231
-
-
Wallner, G.1
Fuchs, B.2
Spring, S.3
Beisker, W.4
Amann, R.5
|