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Volumn 4, Issue 11, 2002, Pages 713-720

Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries

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[No Author keywords available]

Indexed keywords

NON-PROGRAMMATIC;

EID: 18744372991     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2002.00364.x     Document Type: Article
Times cited : (99)

References (24)
  • 1
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990a) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 2
    • 0025099312 scopus 로고
    • Fluorescent oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann, R.I., Krumholz, L., and Stahl, D.A. (1990b) Fluorescent oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172: 762-770.
    • (1990) J Bacteriol , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0024507744 scopus 로고
    • Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells
    • DeLong, E.F., Wickham, G.S., and Pace, N.R. (1989) Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells. Science 243: 1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 5
    • 0032421929 scopus 로고    scopus 로고
    • Phylogenetic diversity of the bacterial community from the anoxic layer of the meromictic Lake Cadagno
    • Demarta, A., Tonolla, M., Caminda, A.-P., Ruggeri, N., and Peduzzi, R. (1998) Phylogenetic diversity of the bacterial community from the anoxic layer of the meromictic Lake Cadagno. Documenta Ist Ital Idrobiol 63: 19-30.
    • (1998) Documenta Ist Ital Idrobiol , vol.63 , pp. 19-30
    • Demarta, A.1    Tonolla, M.2    Caminda, A.-P.3    Ruggeri, N.4    Peduzzi, R.5
  • 6
    • 0031789907 scopus 로고    scopus 로고
    • Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • Fuchs, B.M., Wallner, G., Beisker, W., Schwippl, I., Ludwig, W., and Amann, R. (1998) Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl Environ Microbiol 64: 4973-4982.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2    Beisker, W.3    Schwippl, I.4    Ludwig, W.5    Amann, R.6
  • 7
    • 0344889095 scopus 로고    scopus 로고
    • In situ detection of Escherichia coli cells containing ColE1-related plasmids by hybridization to regulatory RNA II
    • Juretschko, S., Schönhuber, W., Kulakauskas, S., Ehrlich, D.S., Schleifer, K.-H., and Amann, R. (1999) In situ detection of Escherichia coli cells containing ColE1-related plasmids by hybridization to regulatory RNA II. Syst Appl Microbiol 22: 1-8.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 1-8
    • Juretschko, S.1    Schönhuber, W.2    Kulakauskas, S.3    Ehrlich, D.S.4    Schleifer, K.-H.5    Amann, R.6
  • 8
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt, E., and Goodfellow, M. (eds). New York: John Wiley and Sons
    • Lane, D.J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, Stackebrandt, E., and Goodfellow, M. (eds). New York: John Wiley and Sons, pp. 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 9
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions
    • Manz, W., Amann, R., Ludwig, W., Wagner, M., and Schleifer, K.-H. (1992) Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: Problems and solutions. Syst Appl Microbiol 15: 593-600.
    • (1992) Syst Appl Microbiol , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 10
    • 0033066743 scopus 로고    scopus 로고
    • Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content
    • Meier, H., Amann, R., Ludwig, W., and Schleifer, K.-H. (1999) Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content. Syst Appl Microbiol 22: 186-196.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 186-196
    • Meier, H.1    Amann, R.2    Ludwig, W.3    Schleifer, K.-H.4
  • 11
    • 0030001221 scopus 로고    scopus 로고
    • Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
    • Mobarry, B., Wagner, M., Urbain, V., Rittmann, B.E., and Stahl, D.A. (1996) Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl Environ Microbiol 62: 2156-2162.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2156-2162
    • Mobarry, B.1    Wagner, M.2    Urbain, V.3    Rittmann, B.E.4    Stahl, D.A.5
  • 12
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Muyzer, G., Teske, A., Wirsen, C.O., and Jannasch, H.W. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch Microbiol 164: 165-172.
    • (1995) Arch Microbiol , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 13
    • 0023575486 scopus 로고
    • Plasmid incompatibility
    • Novick, R.P. (1987) Plasmid incompatibility. Microbiol Rev 51: 381-395.
    • (1987) Microbiol Rev , vol.51 , pp. 381-395
    • Novick, R.P.1
  • 15
    • 33751536386 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
    • Paul, J. (ed.). San Diego: Academic Press Inc
    • Pernthaler, J., Glöckner, F.O., Schönhuber, W., and Amann, R. (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. In Methods in Microbiology Paul, J. (ed.). San Diego: Academic Press Inc, pp. 207-226.
    • (2001) Methods in Microbiology , pp. 207-226
    • Pernthaler, J.1    Glöckner, F.O.2    Schönhuber, W.3    Amann, R.4
  • 17
    • 0030620178 scopus 로고    scopus 로고
    • A simple method for quantification of uncultured microorganisms in the environment based on in vitro transcription of 16S rRNA
    • Polz, M.F., and Cavanaugh, C.M. (1997) A simple method for quantification of uncultured microorganisms in the environment based on in vitro transcription of 16S rRNA. Appl Environ Microbiol 63: 1028-1033.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1028-1033
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 20
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • Stackebrandt, E., and Goodfellow, M. (eds). Chichester, UK: John Wiley & Sons Ltd
    • Stahl, D.A., and Amann, R. (1991) Development and application of nucleic acid probes. In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt, E., and Goodfellow, M. (eds). Chichester, UK: John Wiley & Sons Ltd, pp. 205-248.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 21
    • 0030688049 scopus 로고    scopus 로고
    • Visualization of specific gene expression in individual Salmonella typhimurium cells by in situ PCR
    • Tolker-Nielsen, T., Holmstrom, K., and Molin, S. (1997) Visualization of specific gene expression in individual Salmonella typhimurium cells by in situ PCR. Appl Environ Microbiol 63: 4196-4203.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4196-4203
    • Tolker-Nielsen, T.1    Holmstrom, K.2    Molin, S.3
  • 22
    • 0033019695 scopus 로고    scopus 로고
    • In situ analysis of phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno (Switzerland)
    • Tonolla, M., Demarta, A., Peduzzi, R., and Hahn, D. (1999) In situ analysis of phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno (Switzerland). Appl Environ Microbiol 65: 1325-1330.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1325-1330
    • Tonolla, M.1    Demarta, A.2    Peduzzi, R.3    Hahn, D.4
  • 23
    • 0033950414 scopus 로고    scopus 로고
    • In situ analysis of sulfate-reducing bacteria related to Desulfocapsa thiozymogenes in the chemocline of meromictic Lake Cadagno (Switzerland)
    • Tonolla, M., Demarta, A., Peduzzi, S., Hahn, D., and Peduzzi, R. (2000) In situ analysis of sulfate-reducing bacteria related to Desulfocapsa thiozymogenes in the chemocline of meromictic Lake Cadagno (Switzerland). Appl Environ Microbiol 66: 820-824.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 820-824
    • Tonolla, M.1    Demarta, A.2    Peduzzi, S.3    Hahn, D.4    Peduzzi, R.5
  • 24
    • 0012011838 scopus 로고
    • Mode of action of chloramphenicol and related antibiotics
    • Vazques, D. (1966) Mode of action of chloramphenicol and related antibiotics. Symp Soc General Microbiol 16: 169-191.
    • (1966) Symp Soc General Microbiol , vol.16 , pp. 169-191
    • Vazques, D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.