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Volumn 9, Issue 4, 2004, Pages 173-181

Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS

Author keywords

Bioinformatics; Biotechnology; Drug Discovery; Peptides; Pharmaceutical Science; Protein databases; Proteomics; Tandem mass spectrometry; Techniques Methods; Validation

Indexed keywords

AMINO ACID SEQUENCE; BIOINFORMATICS; DATA BASE; ENZYME SPECIFICITY; GENOME; LIQUID CHROMATOGRAPHY; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEOMICS; REVIEW; STATISTICAL ANALYSIS; STATISTICAL MODEL; TANDEM MASS SPECTROMETRY; VALIDATION PROCESS;

EID: 1042266254     PISSN: 13596446     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1359-6446(03)02978-7     Document Type: Review
Times cited : (150)

References (69)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold R., Mann M. Mass spectrometry-based proteomics. Nature. 422:2003;198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 3
    • 0036315870 scopus 로고    scopus 로고
    • Top down' protein characterization via tandem mass spectrometry
    • Reid G.E., McLuckey S.A. Top down' protein characterization via tandem mass spectrometry. J. Mass Spectrom. 37:2002;663-675.
    • (2002) J. Mass Spectrom. , vol.37 , pp. 663-675
    • Reid, G.E.1    Mcluckey, S.A.2
  • 4
    • 0033051101 scopus 로고    scopus 로고
    • Direct analysis of protein complexes using mass spectrometry
    • Link A.J., et al. Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17:1999;676-682.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 676-682
    • Link, A.J.1
  • 5
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi S.P., et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17:1999;994-999.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1
  • 6
    • 0037307837 scopus 로고    scopus 로고
    • Stable isotope-coded proteomic mass spectrometry
    • Goshe M.B., Smith R.D. Stable isotope-coded proteomic mass spectrometry. Curr. Opin. Biotechnol. 14:2003;101-109.
    • (2003) Curr. Opin. Biotechnol. , vol.14 , pp. 101-109
    • Goshe, M.B.1    Smith, R.D.2
  • 7
    • 1042307188 scopus 로고    scopus 로고
    • Toward deciphering the knowledge encrypted in large datasets
    • Burlingame A.L. Toward deciphering the knowledge encrypted in large datasets. Mol. Cell. Proteomics. 2:2003;425.
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 425
    • Burlingame, A.L.1
  • 8
    • 0037338297 scopus 로고    scopus 로고
    • Data analysis - the Achilles heel of proteomics
    • Patterson S.D. Data analysis - the Achilles heel of proteomics. Nat. Biotechnol. 21:2003;221-222.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 221-222
    • Patterson, S.D.1
  • 9
    • 0037434977 scopus 로고    scopus 로고
    • Biomedical informatics for proteomics
    • Boguski M.S., McIntosh M.W. Biomedical informatics for proteomics. Nature. 422:2003;233-237.
    • (2003) Nature , vol.422 , pp. 233-237
    • Boguski, M.S.1    Mcintosh, M.W.2
  • 10
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng J.K., et al. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5:1994;976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1
  • 11
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins D.N., et al. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis. 20:1999;3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1
  • 12
    • 0033565832 scopus 로고    scopus 로고
    • Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching
    • Clauser K.R., et al. Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal. Chem. 71:1999;2871-2882.
    • (1999) Anal. Chem. , vol.71 , pp. 2871-2882
    • Clauser, K.R.1
  • 13
    • 0036211823 scopus 로고    scopus 로고
    • RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimizes protein identification, and archives data in a relational database
    • Field H.I., et al. RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimizes protein identification, and archives data in a relational database. Proteomics. 2:2002;36-47.
    • (2002) Proteomics , vol.2 , pp. 36-47
    • Field, H.I.1
  • 14
    • 0002451984 scopus 로고    scopus 로고
    • SCOPE: A probabilistic model for scoring tandem mass spectra against a peptide database
    • Bafna V., Edwards N. SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database. Bioinformatics. 17 (Suppl.):2001;S13- S21.
    • (2001) Bioinformatics , vol.17 , pp. 13-S21
    • Bafna, V.1    Edwards, N.2
  • 15
    • 0035107717 scopus 로고    scopus 로고
    • Efficiency of database search for identification of mutated and modified proteins via mass spectrometry
    • Pevzner P.A., et al. Efficiency of database search for identification of mutated and modified proteins via mass spectrometry. Genome Res. 11:2001;290-299.
    • (2001) Genome Res. , vol.11 , pp. 290-299
    • Pevzner, P.A.1
  • 16
    • 0036808207 scopus 로고    scopus 로고
    • ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
    • Zhang N., et al. ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data. Proteomics. 2:2002;1406-1412.
    • (2002) Proteomics , vol.2 , pp. 1406-1412
    • Zhang, N.1
  • 17
    • 0037317111 scopus 로고    scopus 로고
    • Intensity-based statistical scorer for tandem mass spectrometry
    • Havilio M., et al. Intensity-based statistical scorer for tandem mass spectrometry. Anal. Chem. 75:2003;435-444.
    • (2003) Anal. Chem. , vol.75 , pp. 435-444
    • Havilio, M.1
  • 18
    • 0038047148 scopus 로고    scopus 로고
    • Popitam: Towards new heuristic strategies to improve protein identification from tandem mass spectrometry data
    • Hernandez P., et al. Popitam: towards new heuristic strategies to improve protein identification from tandem mass spectrometry data. Proteomics. 3:2003;870-878.
    • (2003) Proteomics , vol.3 , pp. 870-878
    • Hernandez, P.1
  • 19
    • 0041358793 scopus 로고    scopus 로고
    • OLAV: Towards high-throughput tandem mass spectrometry data identification
    • Colinge J., et al. OLAV: towards high-throughput tandem mass spectrometry data identification. Proteomics. 3:2003;1454-1463.
    • (2003) Proteomics , vol.3 , pp. 1454-1463
    • Colinge, J.1
  • 20
    • 0043064042 scopus 로고    scopus 로고
    • A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases
    • Sadygov, R.G. and Yates, J.R., III (2003) A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases. Anal. Chem. 75, 3792-3798.
    • (2003) Anal. Chem. , vol.75 , pp. 3792-3798
    • Sadygov, R.G.1    Yates III, J.R.2
  • 21
    • 0141955057 scopus 로고    scopus 로고
    • A method for reducing the time required to match protein sequences with tandem mass spectra
    • Craig R., Beavis R.C. A method for reducing the time required to match protein sequences with tandem mass spectra. Rapid Commun. Mass Spectrom. 17:2003;2310-2316.
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 2310-2316
    • Craig, R.1    Beavis, R.C.2
  • 22
    • 0035350894 scopus 로고    scopus 로고
    • Mass spectrometry allows direct identification of proteins in large genomes
    • Kuster B., et al. Mass spectrometry allows direct identification of proteins in large genomes. Proteomics. 1:2001;641-650.
    • (2001) Proteomics , vol.1 , pp. 641-650
    • Kuster, B.1
  • 23
    • 0035346719 scopus 로고    scopus 로고
    • Interrogating the human genome using uninterpreted mass spectrometry data
    • Choudhary J.S., et al. Interrogating the human genome using uninterpreted mass spectrometry data. Proteomics. 1:2001;651-667.
    • (2001) Proteomics , vol.1 , pp. 651-667
    • Choudhary, J.S.1
  • 24
    • 0037246718 scopus 로고    scopus 로고
    • ASAP: The alternative splicing annotation project
    • Lee C., et al. ASAP: the alternative splicing annotation project. Nucleic Acids Res. 31:2003;101-105.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 101-105
    • Lee, C.1
  • 25
    • 0035356977 scopus 로고    scopus 로고
    • Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry
    • Taylor J.A., Johnson R.C. Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry. Anal. Chem. 73:2001;2594-2604.
    • (2001) Anal. Chem. , vol.73 , pp. 2594-2604
    • Taylor, J.A.1    Johnson, R.C.2
  • 26
    • 0032750293 scopus 로고    scopus 로고
    • De novo peptide sequencing via tandem mass spectrometry
    • Dancik V., et al. De novo peptide sequencing via tandem mass spectrometry. J. Comput. Biol. 6:1999;327-342.
    • (1999) J. Comput. Biol. , vol.6 , pp. 327-342
    • Dancik, V.1
  • 27
    • 0034091489 scopus 로고    scopus 로고
    • Automated interpretation of low-energy collision-induced dissociation spectra by SeqMS, a software aid for de novo sequencing by tandem mass spectrometry
    • Fernandez-de-Cossio J., et al. Automated interpretation of low-energy collision-induced dissociation spectra by SeqMS, a software aid for de novo sequencing by tandem mass spectrometry. Electrophoresis. 21:2000;1694-1699.
    • (2000) Electrophoresis , vol.21 , pp. 1694-1699
    • Fernandez-De-Cossio, J.1
  • 28
    • 0034814613 scopus 로고    scopus 로고
    • A dynamic programming approach to de novo sequencing via tandem mass spectrometry
    • Chen T., et al. A dynamic programming approach to de novo sequencing via tandem mass spectrometry. J. Comput. Biol. 8:2001;325-337.
    • (2001) J. Comput. Biol. , vol.8 , pp. 325-337
    • Chen, T.1
  • 29
    • 0012753946 scopus 로고    scopus 로고
    • New computational approaches for de novo peptide sequencing from MS/MS experiments
    • Lubeck O., et al. New computational approaches for de novo peptide sequencing from MS/MS experiments. Proc. IEEE. 90:2002;1868-1874.
    • (2002) Proc. IEEE , vol.90 , pp. 1868-1874
    • Lubeck, O.1
  • 30
    • 0037223678 scopus 로고    scopus 로고
    • A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry
    • Lu B.W., Chen T. A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry. J. Comput. Biol. 10:2003;1-12.
    • (2003) J. Comput. Biol. , vol.10 , pp. 1-12
    • Lu, B.W.1    Chen, T.2
  • 31
    • 0141989734 scopus 로고    scopus 로고
    • PEAKS: Powerful software for peptide de novo sequencing by tandem mass spectrometry
    • Ma B., et al. PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry. Rapid Commun. Mass Spectrom. 17:2003;2337-2342.
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 2337-2342
    • Ma, B.1
  • 33
    • 0043270558 scopus 로고    scopus 로고
    • Improved peptide sequencing using isotope information inherent in tandem mass spectra
    • Cannon W.R., Jarmal K.D. Improved peptide sequencing using isotope information inherent in tandem mass spectra. Rapid Commun. Mass Spectrom. 17:2003;1793-1801.
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 1793-1801
    • Cannon, W.R.1    Jarmal, K.D.2
  • 34
    • 0035326344 scopus 로고    scopus 로고
    • Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching
    • Shevchenko A., et al. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching. Anal. Chem. 73:2001;1917-1926.
    • (2001) Anal. Chem. , vol.73 , pp. 1917-1926
    • Shevchenko, A.1
  • 35
    • 0028575316 scopus 로고
    • Error-tolerant identification of peptides in sequence databases by peptide sequence tags
    • Mann M., Wilm M. Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem. 66:1994;4390-4399.
    • (1994) Anal. Chem. , vol.66 , pp. 4390-4399
    • Mann, M.1    Wilm, M.2
  • 36
    • 0037444813 scopus 로고    scopus 로고
    • MultiTag: Multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry
    • Sunyaev S., et al. MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry. Anal. Chem. 75:2003;1307-1315.
    • (2003) Anal. Chem. , vol.75 , pp. 1307-1315
    • Sunyaev, S.1
  • 37
    • 0345600791 scopus 로고    scopus 로고
    • GutenTag: High-throughput sequence tagging via an empirically derived fragmentation model
    • Tabb D.L., et al. GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model. Anal. Chem. 75:2003;6415-6421.
    • (2003) Anal. Chem. , vol.75 , pp. 6415-6421
    • Tabb, D.L.1
  • 38
    • 0036138754 scopus 로고    scopus 로고
    • Peptide sequence motif analysis of tandem MS data with the SALSA algorithm
    • Liebler D.C., et al. Peptide sequence motif analysis of tandem MS data with the SALSA algorithm. Anal. Chem. 74:2002;203-210.
    • (2002) Anal. Chem. , vol.74 , pp. 203-210
    • Liebler, D.C.1
  • 39
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller A., et al. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74:2002;5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1
  • 40
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii A.I., et al. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75:2003;4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1
  • 41
    • 33746408762 scopus 로고    scopus 로고
    • The application of new software tools to quantitative protein profiling via ICAT and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis and the application of statistical tools for data analysis and interpretation
    • Von Haller P.D., et al. The application of new software tools to quantitative protein profiling via ICAT and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis and the application of statistical tools for data analysis and interpretation. Mol. Cell. Proteomics. 2:2003;428-442.
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 428-442
    • Von Haller, P.D.1
  • 42
    • 0036406762 scopus 로고    scopus 로고
    • Experimental protein mixture for validating tandem mass spectral analysis
    • Keller A., et al. Experimental protein mixture for validating tandem mass spectral analysis. OMICS. 6:2002;207-212.
    • (2002) OMICS , vol.6 , pp. 207-212
    • Keller, A.1
  • 43
    • 0041859530 scopus 로고    scopus 로고
    • Preprocessing of tandem mass spectrometric data to support automatic protein identification
    • Gentzel M., et al. Preprocessing of tandem mass spectrometric data to support automatic protein identification. Proteomics. 3:2003;1597-1610.
    • (2003) Proteomics , vol.3 , pp. 1597-1610
    • Gentzel, M.1
  • 44
  • 45
    • 0037953090 scopus 로고    scopus 로고
    • Similarity among tandem mass spectra from proteomic experiments: Detection, significance, and utility
    • Tabb D.L., et al. Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility. Anal. Chem. 75:2003;2470-2477.
    • (2003) Anal. Chem. , vol.75 , pp. 2470-2477
    • Tabb, D.L.1
  • 46
    • 0034484286 scopus 로고    scopus 로고
    • Method for screening peptide fragment ion mass spectra prior to database searching
    • Moore R.E., et al. Method for screening peptide fragment ion mass spectra prior to database searching. J. Am. Soc. Mass Spectrom. 11:2000;422-426.
    • (2000) J. Am. Soc. Mass Spectrom. , vol.11 , pp. 422-426
    • Moore, R.E.1
  • 47
    • 0038444287 scopus 로고    scopus 로고
    • Initial proteome analysis of model microorganism Haemophilus influenzae Rd strain KW20
    • Kolker E., et al. Initial proteome analysis of model microorganism Haemophilus influenzae Rd strain KW20. J. Bacteriol. 185:2003;4593-4602.
    • (2003) J. Bacteriol. , vol.185 , pp. 4593-4602
    • Kolker, E.1
  • 48
    • 0036589948 scopus 로고    scopus 로고
    • Code developments to improve the efficiency of automated MS/MS spectra interpretation
    • Sadygov R.G., et al. Code developments to improve the efficiency of automated MS/MS spectra interpretation. J. Proteome Res. 1:2002;211-215.
    • (2002) J. Proteome Res. , vol.1 , pp. 211-215
    • Sadygov, R.G.1
  • 49
    • 2442700445 scopus 로고    scopus 로고
    • Peptide precursor charge state determination directly from ion trap MS/ MS spectra
    • Orlando, FL, USA
    • Perez, R.E. et al. (2002) Peptide precursor charge state determination directly from ion trap MS/MS spectra. In Proc. 50th ASMS Conf. Mass Spectrom. Allied Top., Orlando, FL, USA.
    • (2002) Proc. 50th ASMS Conf. Mass Spectrom. Allied Top.
    • Perez, R.E.1
  • 50
    • 0041859600 scopus 로고    scopus 로고
    • Improved peptide charge state assignment
    • Colinge J., et al. Improved peptide charge state assignment. Proteomics. 3:2003;1434-1440.
    • (2003) Proteomics , vol.3 , pp. 1434-1440
    • Colinge, J.1
  • 51
    • 0037353846 scopus 로고    scopus 로고
    • Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides
    • Tabb D.L., et al. Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides. Anal. Chem. 75:2003;1155-1163.
    • (2003) Anal. Chem. , vol.75 , pp. 1155-1163
    • Tabb, D.L.1
  • 52
    • 0242653718 scopus 로고    scopus 로고
    • Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation
    • Kapp E.A., et al. Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation. Anal. Chem. 75:2003;6251-6254.
    • (2003) Anal. Chem. , vol.75 , pp. 6251-6254
    • Kapp, E.A.1
  • 53
    • 0034789979 scopus 로고    scopus 로고
    • Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
    • Han D.K., et al. Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat. Biotechnol. 19:2001;946-951.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 946-951
    • Han, D.K.1
  • 54
    • 0036393898 scopus 로고    scopus 로고
    • DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
    • Tabb D.L., et al. DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1:2002;21-26.
    • (2002) J. Proteome Res. , vol.1 , pp. 21-26
    • Tabb, D.L.1
  • 55
    • 0036745397 scopus 로고    scopus 로고
    • CHOMPER: A bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies
    • Eddes J.S., et al. CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies. Proteomics. 2:2002;1097-1103.
    • (2002) Proteomics , vol.2 , pp. 1097-1103
    • Eddes, J.S.1
  • 56
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large scale protein analysis: The yeast proteome
    • Peng J., et al. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large scale protein analysis: the yeast proteome. J. Proteome Res. 2:2003;43-50.
    • (2003) J. Proteome Res. , vol.2 , pp. 43-50
    • Peng, J.1
  • 57
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B., Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:1998;186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 58
    • 0036828724 scopus 로고    scopus 로고
    • Probability-based validation of protein identifications using a modified SEQUEST algorithm
    • MacCoss M.J., et al. Probability-based validation of protein identifications using a modified SEQUEST algorithm. Anal. Chem. 74:2002;5593-5599.
    • (2002) Anal. Chem. , vol.74 , pp. 5593-5599
    • Maccoss, M.J.1
  • 59
    • 0042972838 scopus 로고    scopus 로고
    • A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: Support vector machine classification of peptide MS/MS spectra and SEQUEST scores
    • Anderson D.C., et al. A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores. J. Proteome Res. 2:2003;137-146.
    • (2003) J. Proteome Res. , vol.2 , pp. 137-146
    • Anderson, D.C.1
  • 60
    • 0037442649 scopus 로고    scopus 로고
    • A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
    • Fenyo D., Beavis R.C. A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal. Chem. 75:2003;768-774.
    • (2003) Anal. Chem. , vol.75 , pp. 768-774
    • Fenyo, D.1    Beavis, R.C.2
  • 61
    • 0141585549 scopus 로고    scopus 로고
    • PRISM, a generic large scale proteomic investigation strategy for mammals
    • Kislinger T., et al. PRISM, a generic large scale proteomic investigation strategy for mammals. Mol. Cell. Proteomics. 2:2003;96-106.
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 96-106
    • Kislinger, T.1
  • 62
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin S., Altschul S.F. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. U. S. A. 87:1990;2264-2268.
    • (1990) Proc. Natl. Acad. Sci. U. S. A. , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 63
    • 12444272753 scopus 로고    scopus 로고
    • Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses
    • Petritis K., et al. Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses. Anal. Chem. 75:2003;1039-1048.
    • (2003) Anal. Chem. , vol.75 , pp. 1039-1048
    • Petritis, K.1
  • 64
    • 1242329500 scopus 로고    scopus 로고
    • Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identification
    • in press
    • Cargile, B.J. et al. Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identification, J. Proteome Res. (in press).
    • J. Proteome Res.
    • Cargile, B.J.1
  • 65
    • 0038699625 scopus 로고    scopus 로고
    • Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
    • Zhang H., et al. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 21:2003;660-666.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 660-666
    • Zhang, H.1
  • 66
    • 0036470450 scopus 로고    scopus 로고
    • What does it mean to identify a protein in proteomics?
    • Rappsilber J., Mann M. What does it mean to identify a protein in proteomics? Trends Biochem. Sci. 27:2002;74-78.
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 74-78
    • Rappsilber, J.1    Mann, M.2
  • 67
    • 0034708758 scopus 로고    scopus 로고
    • A whole-genome assembly of Drosophila
    • Myers E.W., et al. A whole-genome assembly of Drosophila. Science. 287:2000;2196-2204.
    • (2000) Science , vol.287 , pp. 2196-2204
    • Myers, E.W.1
  • 68
    • 0036209134 scopus 로고    scopus 로고
    • Qscore: An algorithm for evaluating SEQUEST database search results
    • Moore R.E., et al. Qscore: an algorithm for evaluating SEQUEST database search results. J. Am. Soc. Mass Spectrom. 13:2002;378-386.
    • (2002) J. Am. Soc. Mass Spectrom. , vol.13 , pp. 378-386
    • Moore, R.E.1
  • 69
    • 0142244510 scopus 로고    scopus 로고
    • Further advances in the development of a data interchange standard for proteomics data
    • Orchard S., et al. Further advances in the development of a data interchange standard for proteomics data. Proteomics. 3:2003;2065-2066.
    • (2003) Proteomics , vol.3 , pp. 2065-2066
    • Orchard, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.