Substrate tRNA recognition mechanism of tRNA (m7G46) methyltransferase from Aquifex aeolicus

Journal of Biological Chemistry

Volumn 279, Issue 47, 2004, Pages 49151-49159

  Okamoto, Hironori ^a   Watanabe, Kazunori ^a   Ikeuchi, Yoshiho ^b   Suzuki, Tsutomu ^b   Endo, Yaeta ^a   Hori, Hiroyuki ^a  

^a EHIME UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; ELECTROPHORESIS; ESCHERICHIA COLI; GENES; RNA;

AEOLICUS GENOMES; METHYLTRANSFERASE;

ENZYMES;

METHYLTRANSFERASE; TRANSFER RNA;

AQUIFEX AEOLICUS; ARTICLE; BINDING SITE; CONTROLLED STUDY; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE EXPRESSION; GENOME; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR RECOGNITION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN FUNCTION; PURIFICATION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BACTERIA; BASE SEQUENCE; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENOME, BACTERIAL; GUANINE; KINETICS; MASS SPECTROMETRY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OPEN READING FRAMES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RNA, TRANSFER; SEQUENCE HOMOLOGY, AMINO ACID; TRNA METHYLTRANSFERASES;

AQUIFEX AEOLICUS; ESCHERICHIA COLI; NEGIBACTERIA;

EID: 10344262083     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M408209200     Document Type: Article

References (59)

1. McCloskey, J. A., and Crain, P. F. (1998) Nucleic Acids Res. 26, 196-197
2. Rozenski, J., McCloskey, J. A., and Crain, P. F. (1999) Nucleic Acids Res. 27, 196-197
3. Motorin, Y., and Grosjean, H. (1998) in Modification and Editing of RNA (Grosjean, H., and Benne, R., eds) pp. 543-550, American Society for Microbiology, Washington, D. C.
4. Björk, G. R. (1992) in Transfer RNA in Protein Synthesis (Hatfleld, D.L., Lee, B. J., and Pirtle, R.M., eds) pp. 23-85, CRC Press, Boca Raton, FL
5. Björk, G. R. (1995) in tRNA: Structure, Biosynthesis, and Function (Söll, D., and RajBhandary, U.L., eds) pp. 165-205, American Society for Microbiology, Washington, D. C.
6. Garcia, G. R., and Goodenough-Lashhua D. M. (1998) in Modification and Editing of RNA (Grosjean, H., and Benne, R., eds) pp. 555-560, American Society for Microbiology, Washington, D. C.
7. Pintard L., Lecointe F., Bujnicki J. M., Bonnerot C., Grosjean H., and Lapeyre B. (2002) EMBO J. 21, 1811-1820
8. Motorin, Y., and Grosjean, H. (1999) RNA (N. Y.) 5, 1105-1811
9. Motorin, Y., Keith, G., Simon, C., Foiret, D., Simos, G., Hurt, E., and Grosjean, H. (1998) RNA (N. Y.) 4, 856-859
10. Lecointe, F., Simos, G., Sauer, A., Hurt, E. C., Motorin, Y., and Grosjean, H. (1998) J. Biol. Chem. 273, 1316-1323
11. Behm-Ansmant, I., Urban, A., Ma, X., Yu, Y. T., Motorin, Y., and Branlant, C. (2003) RNA (N. Y.) 9, 1371-1382
12. Redlak, M., Andraos-Selim, C., Giege, R., Florentz, C., and Holmes, W. M. (1997) Biochemistry 36, 8699-8709
13. Nakanishi, S., Ueda, T., Hori, H., Yamazaki, N., Okada, N., and Watanabe, K. (1994) J. Biol. Chem. 269, 32221-32225
14. Kung, F. L., Nonekowski, S., and Garcia, G. A. (2000) RNA (N. Y.) 6, 233-244
15. Watanabe, M., Nameki, N., Matsuo-Takasaki, M., Nishimura, S., and Okada, N. (2001) J. Biol. Chem. 276, 2387-2394
16. Gu, X., Ofengand, J., and Santi, D. V. (1994) Biochemistry 33, 2255-2261
17. Constantinesco, F., Motorin, Y., and Grosjean, H. (1999) J. Mol. Biol. 291, 375-392
18. Auxilien, S., Crain, P. F., Trewyn, R. W., and Grosjean, H. (1996) J. Mol. Biol. 262, 437-458
19. Gerber, A., Grosjean, H., Melcher, T., and Keller, W. (1998) EMBO J. 17, 4780-4789
20. Soderberg, T., and Poulter, C. D. (2000) Biochemistry 39, 6546-6553
21. Ansmant, I., Motorin, Y., Massenet, S., Grosjean, H., and Branlant, C. (2001) J. Biol. Chem. 276, 34934-34940
22. Hori, H., Yamazaki, N., Matsumoto, T., Watanabe, Y., Ueda, T., Nishikawa, K, Kumagai, I., and Watanabe, K. (1998) J. Biol. Chem. 273, 25721-25727
23. Hori, H., Kubota, S., Watanabe, K., Kim, J. M., Ogasawara, T., Sawasaki, T., and Endo, Y. (2003) J. Biol. Chem. 278, 25081-25090
24. Melton, D. A., Robertis, E. M., and Cortese, R. (1980) Nature 284, 143-148
25. Carbon, P., Haumont, E., Fournier, M., de Henau, S., and Grosjean, H. (1983) EMBO J. 2, 1093-1097
26. Droogmans, L., Haumont, E., de Henau, S., and Grosjean, H. (1986) EMBO J. 5, 1105-1109
27. Edqvist, J., Straby, K. B., and Grosjean, H. (1993) Nucleic Acids Res. 21, 413-417
28. Edqvist, J., Grosjean, H., and Straby, K. B. (1992) Nucleic Acids Res. 20, 6575-6581
29. Grosjean, H., Edqvist, J., Straby, K. B., and Giege, R. (1996) J. Mol. Biol. 255, 67-85
30. Li, J.-N., and Björk, G. R. (1999) RNA (N. Y.) 5, 395-408
31. Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., and Yokoyama, S. (2003) Cell 113, 383-394
32. Xie, W., Liu, X., and Huang, R. H. (2003) Nat. Struct. Biol. 10, 781-788
33. Hoang, C., and Ferre-D'Amare, A. (2001) Cell 107, 929-939
34. Pan, H., Agarwalla, S., Moustakas, D. T., Finer-Moore, J., and Stroud, R. M. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 12648-12653
35. Phannachet, K., and Huang, R. H. (2004) Nucleic Acids Res. 32, 1422-1429
36. Matsuyama, S., Ueda, T., Crain, P. F., McCloskey, J. A., and Watanabe, K. (1998) J. Biol. Chem. 273, 3363-3368
37. Tomita K., Ueda, T., and Watanabe, K. (1998) Biochim. Biophys. Acta. 1399, 78-83
38. Jakab, G., Kis, M., Palfi, Z., and Solymosy, F. (1990) Nucleic Acids Res. 18, 7444
39. Hurwitz, J., Gold, M., and Anders, M. (1964) J. Biol. Chem. 239, 3474-3482
40. Aschoff, H. J., Elten, H., Arnold, H. H., Mahal, G., Kersten, W., and Kersten H. (1976) Nucleic Acids Res. 3, 3109-3122
41. Cimino, F., Traboni, C., Colonna, A., Izzo, F., and Salvatore, F. (1981) Mol. Cell. Biochem. 36, 95-104
42. Morozov, I. A., Gambaryan, A. S., Lvova, T. N., Nedospasov, A. A., and Venkstern, T. V. (1982) Eur. J. Biochem. 129, 429-436
43. Koski, R. A., and Clarkson, S. G. (1982) J. Biol. Chem. 257, 4514-4521
44. Drabkin, H. J., and RajBhandary, U. L. (1985) J. Biol. Chem. 260, 5580-5587
45. Stange, N., and Beier, H. (1987) EMBO J. 6, 2811-2818
46. Alexandrov, A., Martzen, M. R., and Phizicky, E. M. (2002) RNA (N. Y.) 8, 1253-1266
47. De Bie, L. G., Roovers, M., Oudjama, Y., Wattiez, R., Tricot, C., Stalon, V., Droogmans, L., and Bujnicki, J. M. (2003) J. Bacteriol. 185, 3238-3243
48. Ohtsuki, T., Kawai, G., and Watanabe, K. (1998) J. Biochem. 124, 28-34
49. Hori, H., Suzuki, T., Sugawara, K., Inoue, Y., Shibata, T., Kuramitsu S., Yokoyama, S., Oshima, T., and Watanabe, K. (2002) Genes Cells 7, 259-272
50. Droogmans, L., Roovers, M., Bujnicki, J., Tricot, C., Hartsch, T., Stalon, V., and Grosjean, H. (2003) Nucleic Acids Res. 31, 2148-2156
51. Roovers, M., Wouters, J., Bujnicki, J. M., Tricot, C., Stalon, V., Grosjean, H., and Droogmans, L. (2004) Nucleic Acids Res. 32, 465-476
52. Huber, R., Wilharm, T., Huber, D., Trincone, A., Burggraf, S., Konig, H., Rachel, R., Rockinger, I., Fricke, H., and Stetter, K. O. (1992) Syst. Appl. Microbiol. 15, 340-351
53. Burggraf, S., Olsen, G. J., Stetter, K. O., and Woese, C. R. (1992) Syst. Appl. Microbiol. 15, 353-356
54. Deckert, G., Warren, P. V., Gaasterland, T., Young W. G., Lenox, A. L., Graham, D. E., Overbeek, R., Snead, M. A., Keller, M., Aujay, M., Huber, R., Feldman, R. A., Short, J. M., Olsen, G. J., and Swanson, R. V. (1998) Nature 392, 353-358
55. Soma, A., Ikeuchi, Y., Kanemasa, S., Kobayashi, K., Ogasawara, N., Ote, T., Kato, J., Watanabe, K., Sekine, Y., and Suzuki, T. (2003) Mol. Cell 12, 689-698
56. Watanabe, Y., Tsurai, H., Ueda, T., Furushima, B., Takamiya, S., Kita, K., Nishikawa, K., and Watanabe, K. (1994) J. Biol. Chem. 269, 22902-22906
57. Chang, S., and Carbon, J. (1975) J. Biol. Chem. 250, 5542-5555
58. Robertus, J. D., Ladner, J. E., Finch, J. T., Rhodes, D., Brown, R. S., Clark, B. F. C., and Klug, A. (1974) Nature 250, 546-551
59. Kim, S. H., Sussman, J. L., Suddath, F. L., Quigley, G. J., McPherson, A., Wang, A. H. J., Seeman, N. C., and Rich, A. (1974) Proc. Natl. Acad. Sci. U. S. A. 71, 4970-4974