메뉴 건너뛰기




Volumn 21, Issue 1, 2004, Pages 117-128

Highly Heterogeneous Rates of Evolution in the SKP1 Gene Family in Plants and Animals: Functional and Evolutionary Implications

Author keywords

Arabidopsis; Evolution; Rate heterogeneity; SKP1 gene family

Indexed keywords

CULLIN; F BOX PROTEIN; PROTEIN; PROTEIN RBX1; S PHASE KINASE ASSOCIATED PROTEIN; UBIQUITIN PROTEIN LIGASE; UNCLASSIFIED DRUG;

EID: 0842322358     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh001     Document Type: Article
Times cited : (62)

References (46)
  • 2
    • 0030602813 scopus 로고    scopus 로고
    • SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box
    • Bai, C., P. Sen, K. Hofmann, L. Ma, M. Goebl, J. W. Harper, and S. J. Elledge. 1996. SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box. Cell 86:263-274.
    • (1996) Cell , vol.86 , pp. 263-274
    • Bai, C.1    Sen, P.2    Hofmann, K.3    Ma, L.4    Goebl, M.5    Harper, J.W.6    Elledge, S.J.7
  • 3
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S. L., A. J. Roger, I. Wenk-Siefert, and W. F. Doolittle. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 5
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins: Matrices for detecting distant relationships
    • M. O. Dayhoff, ed. National Biomedical Research Foundation, Washington, DC
    • Dayhoff, M. O., R. M. Schwartz, and B. C. Orcutt. 1978. A model of evolutionary change in proteins: matrices for detecting distant relationships. Pp. 345-358 in M. O. Dayhoff, ed. Atlas of protein sequence and structure. National Biomedical Research Foundation, Washington, DC.
    • (1978) Atlas of Protein Sequence and Structure , pp. 345-358
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 8
    • 0037143725 scopus 로고    scopus 로고
    • The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis
    • Gagne, J. M., B. P. Downes, S. H. Shiu, A. M. Durski, and R. D. Vierstra. 2002. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc. Natl. Acad. Sci. USA 99:11519-11524.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11519-11524
    • Gagne, J.M.1    Downes, B.P.2    Shiu, S.H.3    Durski, A.M.4    Vierstra, R.D.5
  • 10
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
    • Goff, S. A., D. Ricke, T. H. Lan et al. (52 co-authors) 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92-100.
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Lan, T.H.3
  • 11
    • 0030670413 scopus 로고    scopus 로고
    • PSeq-Gen: An application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees
    • Grassly, N. C., J. Adachi, and A. Rambaut. 1997. PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:559-560.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 559-560
    • Grassly, N.C.1    Adachi, J.2    Rambaut, A.3
  • 13
    • 13044317276 scopus 로고    scopus 로고
    • Ubiquitin-dependent degradation of IκBα is mediated by a ubiquitin ligase Skp1/Cu1 1/F-box protein FWD1
    • Hatakeyama, S., M. Kitagawa, K. Nakayama et al. (11 co-authors) 1999. Ubiquitin-dependent degradation of IκBα is mediated by a ubiquitin ligase Skp1/Cu1 1/F-box protein FWD1. Proc. Natl. Acad. Sci. USA 96:3859-3863.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 3859-3863
    • Hatakeyama, S.1    Kitagawa, M.2    Nakayama, K.3
  • 14
    • 0033569991 scopus 로고    scopus 로고
    • Molecular dissection of the interactions among IκBα, FWD1, and Skp1 required for ubiquitin-mediated proteolysis of IκBα
    • Hattori, K., S. Hatakeyama, M. Shirane, M. Matsumoto, and K. Nakayama. 1999. Molecular dissection of the interactions among IκBα, FWD1, and Skp1 required for ubiquitin-mediated proteolysis of IκBα. J. Biol. Chem. 274:29641-29647.
    • (1999) J. Biol. Chem. , vol.274 , pp. 29641-29647
    • Hattori, K.1    Hatakeyama, S.2    Shirane, M.3    Matsumoto, M.4    Nakayama, K.5
  • 15
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S., and J. G. Henikoff. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89:10915-10919.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 17
    • 0002410257 scopus 로고    scopus 로고
    • Parametric bootstrapping in molecular phylogenetics: Applications and performance
    • J. D. Ferris and S. R. Palumbi, eds. Wiley-Liss, New York
    • Huelsenbeck, J. P., D. M. Hillis, and R. Jones. 1996. Parametric bootstrapping in molecular phylogenetics: applications and performance. Pp. 19-45 in J. D. Ferris and S. R. Palumbi, eds. Molecular zoology: advances, strategies and protocols. Wiley-Liss, New York.
    • (1996) Molecular Zoology: Advances, Strategies and Protocols , pp. 19-45
    • Huelsenbeck, J.P.1    Hillis, D.M.2    Jones, R.3
  • 19
    • 0036282703 scopus 로고    scopus 로고
    • The SCF ubiquitin ligase: An extended look
    • Jackson, P. K., and A. G. Eldridge. 2002. The SCF ubiquitin ligase: an extended look. Mol. Cell 9:923-925.
    • (2002) Mol. Cell , vol.9 , pp. 923-925
    • Jackson, P.K.1    Eldridge, A.G.2
  • 20
    • 0034568688 scopus 로고    scopus 로고
    • The F-box protein family
    • REVIEWS3002
    • Kipreos, E. T., and M. Pagano. 2000. The F-box protein family. Genome Biol. 1:REVIEWS3002.
    • (2000) Genome Biol. , vol.1
    • Kipreos, E.T.1    Pagano, M.2
  • 21
    • 0037161658 scopus 로고    scopus 로고
    • All genomes great and small
    • Knight, J. 2002. All genomes great and small. Nature 417: 374-376.
    • (2002) Nature , vol.417 , pp. 374-376
    • Knight, J.1
  • 23
    • 0031594638 scopus 로고    scopus 로고
    • Proteolysis and the G1-S transition: The SCF connection
    • Krek, W. 1998. Proteolysis and the G1-S transition: the SCF connection. Curr. Opin. Genet. Dev. 8:36-42.
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 36-42
    • Krek, W.1
  • 24
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 25
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • Lynch, M., and A. Force. 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics 154:459-473.
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 26
    • 0037133036 scopus 로고    scopus 로고
    • The Caenorhabditis elegans Skp1-related gene family: Diverse functions in cell proliferation, morphogenesis, and meiosis
    • Nayak, S., F. E. Santiago, H. Jin, D. Lin, T. Schedl, and E. T. Kipreos. 2002. The Caenorhabditis elegans Skp1-related gene family: diverse functions in cell proliferation, morphogenesis, and meiosis. Curr. Biol. 12:277-287.
    • (2002) Curr. Biol. , vol.12 , pp. 277-287
    • Nayak, S.1    Santiago, F.E.2    Jin, H.3    Lin, D.4    Schedl, T.5    Kipreos, E.T.6
  • 27
    • 0035801406 scopus 로고    scopus 로고
    • CDC4 recognition elements target Cdc6 for proteolysis in S phase and mitosis
    • CDC4 recognition elements target Cdc6 for proteolysis in S phase and mitosis. EMBO J. 20:4836-4845.
    • (2001) EMBO J. , vol.20 , pp. 4836-4845
    • Perkins, G.1    Drury, L.S.2    Diffley, J.F.3
  • 28
    • 0033226672 scopus 로고    scopus 로고
    • The UNUSUAL FLORAL ORGANS gene of Arabidopsis thaliana is an F-box protein required for normal patterning and growth in the floral meristem
    • Samach, A., J. E. Klenz, S. E. Kohalmi, E. Risseeuw, G. W. Haughn, and W. L. Crosby. 1999. The UNUSUAL FLORAL ORGANS gene of Arabidopsis thaliana is an F-box protein required for normal patterning and growth in the floral meristem. Plant J. 20:433-445.
    • (1999) Plant J. , vol.20 , pp. 433-445
    • Samach, A.1    Klenz, J.E.2    Kohalmi, S.E.3    Risseeuw, E.4    Haughn, G.W.5    Crosby, W.L.6
  • 32
    • 0029100727 scopus 로고
    • Phylogenetic test of the molecular clock and linearized trees
    • Takezaki, N., A. Rzhetsky, and M. Nei. 1995. Phylogenetic test of the molecular clock and linearized trees. Mol. Biol. Evol. 12:823-833.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 823-833
    • Takezaki, N.1    Rzhetsky, A.2    Nei, M.3
  • 33
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 36
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe, K. H., and D. C. Shields. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 38
    • 0037133045 scopus 로고    scopus 로고
    • Multiple Skp1-related proteins in Caenorhabditis elegans: Diverse patterns of interaction with Cullins and F-box proteins
    • Yamanaka, A., M. Yada, H. Imaki, M. Koga, Y. Ohshima, and K. Nakayama. 2002. Multiple Skp1-related proteins in Caenorhabditis elegans: diverse patterns of interaction with Cullins and F-box proteins. Curr. Biol. 12:267-275.
    • (2002) Curr. Biol. , vol.12 , pp. 267-275
    • Yamanaka, A.1    Yada, M.2    Imaki, H.3    Koga, M.4    Ohshima, Y.5    Nakayama, K.6
  • 39
    • 0033613148 scopus 로고    scopus 로고
    • The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation
    • Yang, M., Y. Hu, M. Lodhi, W. R. McCombie, and H. Ma. 1999. The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation. Proc. Natl. Acad. Sci. USA 96:11416-11421.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 11416-11421
    • Yang, M.1    Hu, Y.2    Lodhi, M.3    McCombie, W.R.4    Ma, H.5
  • 40
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 41
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    • Yu, J., S. Hu, J. Wang et al. (83 co-authors). 2002. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-92.
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3
  • 42
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • Zhang, J. 2003. Evolution by gene duplication: an update. Trends Ecol. Evol. 18:292-298.
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 292-298
    • Zhang, J.1
  • 43
    • 1242335936 scopus 로고    scopus 로고
    • Conservation and divergence of ASK1 and ASK2 gene functions during male meiosis in Arabidopsis thaliana
    • in press
    • Zhao, D., T. Han, E. Risseeuw, W. L. Crosby, and H. Ma. 2003. Conservation and divergence of ASK1 and ASK2 gene functions during male meiosis in Arabidopsis thaliana. Plant Mol. Biol. (in press).
    • (2003) Plant Mol. Biol.
    • Zhao, D.1    Han, T.2    Risseeuw, E.3    Crosby, W.L.4    Ma, H.5
  • 44
    • 0032749934 scopus 로고    scopus 로고
    • The ASK1 gene regulates development and interacts with the UFO gene to control floral organ identity in Arabidopsis
    • Zhao, D., M. Yang, J. Solava, and H. Ma. 1999. The ASK1 gene regulates development and interacts with the UFO gene to control floral organ identity in Arabidopsis. Dev. Genet. 25:209-223.
    • (1999) Dev. Genet. , vol.25 , pp. 209-223
    • Zhao, D.1    Yang, M.2    Solava, J.3    Ma, H.4
  • 45
    • 0034920896 scopus 로고    scopus 로고
    • The ASK1 gene regulates B function gene expression in cooperation with UFO and LEAFY in Arabidopsis
    • Zhao, D., Q. Yu, M. Chen, and H. Ma. 2001. The ASK1 gene regulates B function gene expression in cooperation with UFO and LEAFY in Arabidopsis. Development 128:2735-2746.
    • (2001) Development , vol.128 , pp. 2735-2746
    • Zhao, D.1    Yu, Q.2    Chen, M.3    Ma, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.