SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (lobosea, gymnamoebia): The origin of gymnamoebae revisited

Molecular Biology and Evolution

Volumn 18, Issue 12, 2001, Pages 2306-2314

  Bolivar, Ignacio ^a   Fahrni, José F ^a   Smirnov, Alexei ^b   Pawlowski, Jan ^a,c  

^a UNIVERSITY OF GENEVA   (Switzerland)

^b ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

^c Station de Zoologie   (Switzerland)

Author keywords

Amoebae; Phylogeny; RRNA

Indexed keywords

RIBOSOME RNA;

AMOEBA; ARTICLE; DNA SEQUENCE; EVOLUTION; GENE SEQUENCE; LIFE CYCLE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PSEUDOPODIUM; RNA GENE; SPECIES DIFFERENTIATION;

AMOEBA LENINGRADENSIS; AMOEBA PROTEUS; CHAOS CAROLINENSE; CHAOS NOBILE; ECHINAMOEBA; HARTMANNELLA; LEPTOMYXA; PARAFLABELLULA; RHIZAMOEBA; SACCAMOEBA;

EID: 0035207791     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a003777     Document Type: Article

References (69)

1. A molecular reassessment of the leptomyxid amoebae
2. Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
3. A kingdom-level phylogeny of eukaryotes based on combined protein data
4. srRNA evolution and phylogenetic relationships of the genus Naegleria (Protista: Rhizopoda)
5. Molecular evolutionary analyses of nuclear-encoded SSU rRNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta
6. The actin gene of the glaucocystophyte Cyanophora paradoxa: Analysis of the coding region and introns, and an actin phylogeny of eukaryotes
7. Class Lobosea Carpenter 1861
8. Kingdom Protozoa and its 18 Phyla
9. A revised six-kingdom system of life
10. Neomonada and the origin of animals and fungi
11. Flagellate megaevolution: The basis for eukaryote diversification
12. What are Fungi?
13. Molecular phylogeny of the free-living archezoan Trepomonas agilis and the nature of the first eukaryote
14. Sarcomonad ribosomal RNA sequences, rhizopod phylogeny, and the origin of euglyphid amoebae
15. Ordre des Amoebiens nus ou Amoebae
16. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenolchloroform extraction
17. Small-subunit ribosomal RNA sequence from Naegleria gruberi supports the polyphyletic origin of amoebas
18. Isolating RNA from cells in culture using Catrimox-14™ cationic surfactant
19. Phylogenies from molecular sequences: Inference and reliability
20. SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
21. A preliminary communication on three new proteomyxian rhizopods from soil
22. The sequence of the Hartmannella vermiformis small subunit rRNA coding region
23. Length variation in eukaryotic rRNAs: Small subunit rRNAs from the protists Acanthamoeba castellanii and Euglena gracilis
24. The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi
25. The evolution of the Vahlkampfiidae as deduced from 16S-like ribosomal RNA analysis
26. A ribosomal protein gene cluster is encoded in the mitochondrial DNA of Dictyostelium discoideum: UGA termination codons and similarity of gene order to Acanthamoeba castellanii
27. Mechanisms of movement in taxonomy of Sarcodina. I. As a basis for a new major dichotomy into two classes, Autotractea and Hydraulea
28. Taxonomy and evolution of sarcodina: A reclassification
29. Sequences, structural models, and cellular localization of the actin-related proteins Arp2 and Arp3 from Acanthamoeba
30. A newly revised classification of the Protozoa
31. The origin of red algae and the evolution of chloroplasts
32. FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
33. A further study of taxonomic criteria for limax amoebae, with description of new species and a key to genera
34. A revised classification of the Gymnamoebia (Protozoa: Sarcodina)
35. The classification of 'naked' amoebae (Phylum Rhizopoda)
36. Nackte Rizopoda
37. The Heterolobosea (Sarcodina: Rhizopoda), a new class uniting the Schizopyrenida and the Acrasidae (Acrasida)
38. Molecular evidence that Reticulomyxa filosa is a freshwater naked foraminifer
39. The molecular phylogeny of Eukaryota: Solid facts and uncertainties
40. The new phylogeny of eukaryotes
41. Nucleotide sequence of a small subunit ribosomal RNA (16S-like rRNA) gene from Entamoeba histolytica: Differentiation of pathogenic from nonpathogenic isolates
42. Sensitivity of the relative-rate test to taxonomic sampling
43. Evidence for the Heterolobosea from phylogenetic analysis of genes encoding glyceraldehyde-3-phosphate dehydrogenase
44. The neighbor-joining method: A new method for reconstructing phylogenetic trees
45. A proposed new family Acanthamoebidae n. fam. (order Amoebida) for certain cyst-forming filose amoebae
46. Taxonomy of the Amoebas
47. Actin-related proteins
48. Protist evolution and phylogeny as discerned from small subunit ribosomal RNA sequence comparisons
49. Phylogeny of the genera Entamoeba and Endolimax as deduced from small-subunit ribosomal RNA sequences
50. Human parasite finds taxonomic home
51. The organisation of Mastigamoeba schizophrenia n. sp.: More evidence of ultrastructural idiosyncrasy and simplicity in pelobiont protists
52. Primary and secondary structure of the small-subunit ribosomal RNA of the naked, marine amoeba Vannella anglica: Phylogenetic implications
53. Nuclear division in nine species of freeliving amoebae and its bearing on the taxonomy of the order Amoebida
54. Evolution of eukaryotic microorganisms and their small subunit ribosomal RNAs
55. Evolution of the protists and protistan parasites from the perspective of molecular systematics
56. Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II
57. The origin of red algae: Implications for plastid evolution
58. Long-branch attraction and the rDNA model of early eukaryotic evolution
59. The evolutionary history of the genus Acanthamoeba and the identification of eight new 18S rRNA gene sequence types
60. The European small subunit ribosomal RNA database
61. Leptomyxid amoeba, a new agent of amoebic meningoencephalitis in humans and animals
62. Balamuthia madrillaris, n. g., n. sp., agent of amebic meningoencephalitis in humans and other animals
63. Ultrastruktur mariner Amöben. II. Stereomyxa ramosa
64. Ultrastruktur mariner Amöben. III. Stereomyxa angulosa
65. Ultrastructural identities of Mastigamoeba punctachora, Mastigamoeba simplex and Mastigella commutans and assessment of hypothesis of relatedness of the pelobionts (Protista)
66. Sequence variations in SSU rRNAs of Hartmannella vermiformis and their phylogenetic implications