메뉴 건너뛰기




Volumn 335, Issue 5, 2004, Pages 1173-1185

Ribosomal Protein-dependent Orientation of the 16 S rRNA Environment of S15

Author keywords

16 S ribosomal RNA; 30 S subunit; Assembly; Conformational change; Ribosomal protein S15

Indexed keywords

BINDING PROTEIN; IRON COMPLEX; PROTEIN S15; PROTEIN SUBUNIT; RIBOSOME PROTEIN; RNA 16S; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 0347757093     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2003.11.031     Document Type: Article
Times cited : (8)

References (37)
  • 1
    • 36949051443 scopus 로고
    • Assembly mapping of 30 S ribosomal proteins in E. coli
    • Mizushima S., Nomura M. Assembly mapping of 30 S ribosomal proteins in E. coli. Nature. 226:1970;1214-1218.
    • (1970) Nature , vol.226 , pp. 1214-1218
    • Mizushima, S.1    Nomura, M.2
  • 2
    • 0016153699 scopus 로고
    • Assembly mapping of 30 S ribosomal proteins from Escherichia coli
    • Held W.A., Ballou B., Mizushima S., Nomura M. Assembly mapping of 30 S ribosomal proteins from Escherichia coli. J. Biol. Chem. 249:1974;3103-3111.
    • (1974) J. Biol. Chem. , vol.249 , pp. 3103-3111
    • Held, W.A.1    Ballou, B.2    Mizushima, S.3    Nomura, M.4
  • 3
    • 0027979072 scopus 로고
    • Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16 S rRNA
    • Samaha R.R., O'Brien B., O'Brien T.W., Noller H.F. Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16 S rRNA. Proc. Natl Acad. Sci. USA. 91:1994;7884-7888.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 7884-7888
    • Samaha, R.R.1    O'Brien, B.2    O'Brien, T.W.3    Noller, H.F.4
  • 6
    • 0018360588 scopus 로고
    • Binding sites for ribosomal protein S8 and S15 in the 16 S RNA of Escherichia coli
    • Zimmermann R.A., Singh-Bergmann K. Binding sites for ribosomal protein S8 and S15 in the 16 S RNA of Escherichia coli. Biochim. Biophys. Acta. 563:1979;422-431.
    • (1979) Biochim. Biophys. Acta , vol.563 , pp. 422-431
    • Zimmermann, R.A.1    Singh-Bergmann, K.2
  • 7
    • 0018365929 scopus 로고
    • The structure of the RNA binding site of ribosomal proteins S8 and S15
    • Muller R., Garrett R.A., Noller H.F. The structure of the RNA binding site of ribosomal proteins S8 and S15. J. Biol. Chem. 254:1979;3873-3878.
    • (1979) J. Biol. Chem. , vol.254 , pp. 3873-3878
    • Muller, R.1    Garrett, R.A.2    Noller, H.F.3
  • 8
    • 0024292424 scopus 로고
    • Interaction of ribosomal proteins, S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA
    • Svensson P., Changchien L.M., Craven G.R., Noller H.F. Interaction of ribosomal proteins, S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA. J. Mol. Biol. 200:1988;301-308.
    • (1988) J. Mol. Biol. , vol.200 , pp. 301-308
    • Svensson, P.1    Changchien, L.M.2    Craven, G.R.3    Noller, H.F.4
  • 9
    • 0029286628 scopus 로고
    • Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA
    • Powers T., Noller H.F. Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA. RNA. 1:1995;194-209.
    • (1995) RNA , vol.1 , pp. 194-209
    • Powers, T.1    Noller, H.F.2
  • 10
    • 0030606880 scopus 로고    scopus 로고
    • Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site
    • Batey R.T., Williamson J.R. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site. J. Mol. Biol. 261:1996;536-549.
    • (1996) J. Mol. Biol. , vol.261 , pp. 536-549
    • Batey, R.T.1    Williamson, J.R.2
  • 11
    • 0030606876 scopus 로고    scopus 로고
    • Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition
    • Batey R.T., Williamson J.R. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition. J. Mol. Biol. 261:1996;550-567.
    • (1996) J. Mol. Biol. , vol.261 , pp. 550-567
    • Batey, R.T.1    Williamson, J.R.2
  • 12
    • 0036303417 scopus 로고    scopus 로고
    • Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA
    • Brodersen D.E., Clemons W.M. Jr, Carter A.P., Wimberly B.T., Ramakrishnan V. Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA. J. Mol. Biol. 316:2002;725-768.
    • (2002) J. Mol. Biol. , vol.316 , pp. 725-768
    • Brodersen, D.E.1    Clemons Jr., W.M.2    Carter, A.P.3    Wimberly, B.T.4    Ramakrishnan, V.5
  • 13
    • 0032559410 scopus 로고    scopus 로고
    • 2+-induced conformational changes in the S15 binding site of 16 S ribosomal RNA
    • 2+-induced conformational changes in the S15 binding site of 16 S ribosomal RNA. J. Mol. Biol. 275:1998;453-464.
    • (1998) J. Mol. Biol. , vol.275 , pp. 453-464
    • Orr, J.W.1    Hagerman, P.J.2    Williamson, J.R.3
  • 14
    • 0035850733 scopus 로고    scopus 로고
    • Central domain assembly: Thermodynamics and kinetics of S6 and S18 binding to an S15-RNA complex
    • Recht M.I., Williamson J.R. Central domain assembly: thermodynamics and kinetics of S6 and S18 binding to an S15-RNA complex. J. Mol. Biol. 313:2001;35-48.
    • (2001) J. Mol. Biol. , vol.313 , pp. 35-48
    • Recht, M.I.1    Williamson, J.R.2
  • 15
    • 0034615759 scopus 로고    scopus 로고
    • Structure of the S15, S6, S18-rRNA complex: Assembly of the 30 S ribosome central domain
    • Agalarov S.C., Sridhar Prasad G., Funke P.M., Stout C.D., Williamson J.R. Structure of the S15, S6, S18-rRNA complex: assembly of the 30 S ribosome central domain. Science. 288:2000;107-113.
    • (2000) Science , vol.288 , pp. 107-113
    • Agalarov, S.C.1    Sridhar Prasad, G.2    Funke, P.M.3    Stout, C.D.4    Williamson, J.R.5
  • 17
    • 0038122829 scopus 로고    scopus 로고
    • Assembly of the central domain of the 30 S ribosomal subunit: Roles for the primary binding ribosomal proteins S15 and S8
    • Jagannathan I., Culver G.M. Assembly of the central domain of the 30 S ribosomal subunit: roles for the primary binding ribosomal proteins S15 and S8. J. Mol. Biol. 330:2003;373-383.
    • (2003) J. Mol. Biol. , vol.330 , pp. 373-383
    • Jagannathan, I.1    Culver, G.M.2
  • 18
    • 0032849011 scopus 로고    scopus 로고
    • Identification of an RNA-protein bridge spanning the ribosomal subunit interface
    • Culver G.M., Cate J.H., Yusupova G.Z., Yusopov M.M., Noller H.F. Identification of an RNA-protein bridge spanning the ribosomal subunit interface. Science. 285:1999;2133-2135.
    • (1999) Science , vol.285 , pp. 2133-2135
    • Culver, G.M.1    Cate, J.H.2    Yusupova, G.Z.3    Yusopov, M.M.4    Noller, H.F.5
  • 20
    • 0000048117 scopus 로고
    • Iron chelate mediated proteolysis - Protein structure dependence
    • Rana T., Meares C. Iron chelate mediated proteolysis - protein structure dependence. J. Am. Chem. Soc. 112:1991;2457-2458.
    • (1991) J. Am. Chem. Soc. , vol.112 , pp. 2457-2458
    • Rana, T.1    Meares, C.2
  • 21
    • 0033057324 scopus 로고    scopus 로고
    • Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins
    • Culver G.M., Noller H.F. Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins. RNA. 5:1999;832-843.
    • (1999) RNA , vol.5 , pp. 832-843
    • Culver, G.M.1    Noller, H.F.2
  • 22
    • 0033655152 scopus 로고    scopus 로고
    • Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes
    • Culver G.M., Noller H.F. Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes. Methods Enzymol. 318:2000;461-475.
    • (2000) Methods Enzymol. , vol.318 , pp. 461-475
    • Culver, G.M.1    Noller, H.F.2
  • 23
    • 0003098935 scopus 로고    scopus 로고
    • Footprinting and modification-interference analysis of binding sites on RNA
    • C.W.J. Smith. Oxford, UK: Oxford University Press
    • Merryman C., Noller H.F. Footprinting and modification-interference analysis of binding sites on RNA. Smith C.W.J. RNA:Protein Interactions. A Practical Approach. 1998;237-253 Oxford University Press, Oxford, UK.
    • (1998) RNA:Protein Interactions. a Practical Approach , pp. 237-253
    • Merryman, C.1    Noller, H.F.2
  • 24
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • Cannone J.J., Subramaniam S., Schare, M. N., Collett J.R., D'Souza L.M., Du Y., et al. The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BioMed. Central Bioinformatics. 3:2002;2.
    • (2002) BioMed. Central Bioinformatics , vol.3 , pp. 2
    • Cannone, J.J.1    Subramaniam, S.2    Schare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6
  • 25
    • 0030657775 scopus 로고    scopus 로고
    • Mapping the inside of the ribosome with an RNA helical ruler
    • Joseph S., Weiser B., Noller H.F. Mapping the inside of the ribosome with an RNA helical ruler. Science. 278:1997;1093-1098.
    • (1997) Science , vol.278 , pp. 1093-1098
    • Joseph, S.1    Weiser, B.2    Noller, H.F.3
  • 26
    • 0036865245 scopus 로고    scopus 로고
    • Structure of the 70 S ribosome: Implications for movement
    • Noller H.F., Baucom A. Structure of the 70 S ribosome: implications for movement. Biochem. Soc. Trans. 30:2002;1159-1161.
    • (2002) Biochem. Soc. Trans. , vol.30 , pp. 1159-1161
    • Noller, H.F.1    Baucom, A.2
  • 27
    • 0033534197 scopus 로고    scopus 로고
    • Nucleotides in 16 S rRNA protected by the association of 30 S and 50 S ribosomal subunits
    • Merryman C., Moazed D., McWhirter J., Noller H.F. Nucleotides in 16 S rRNA protected by the association of 30 S and 50 S ribosomal subunits. J. Mol. Biol. 285:1999;97-105.
    • (1999) J. Mol. Biol. , vol.285 , pp. 97-105
    • Merryman, C.1    Moazed, D.2    McWhirter, J.3    Noller, H.F.4
  • 29
    • 0024292371 scopus 로고
    • Interaction of proteins S16, S17 and S20 with 16 S ribosomal RNA
    • Stern S., Changchien L.-M., Craven G.R., Noller H.F. Interaction of proteins S16, S17 and S20 with 16 S ribosomal RNA. J. Mol. Biol. 200:1988;291-299.
    • (1988) J. Mol. Biol. , vol.200 , pp. 291-299
    • Stern, S.1    Changchien, L.-M.2    Craven, G.R.3    Noller, H.F.4
  • 30
    • 0023930984 scopus 로고
    • Interaction of ribosomal proteins S5, S6, S11, S12, S18 and S21 with 16 S rRNA
    • Stern S., Powers T., Changchien L.M., Noller H.F. Interaction of ribosomal proteins S5, S6, S11, S12, S18 and S21 with 16 S rRNA. J. Mol. Biol. 201:1988;683-695.
    • (1988) J. Mol. Biol. , vol.201 , pp. 683-695
    • Stern, S.1    Powers, T.2    Changchien, L.M.3    Noller, H.F.4
  • 31
    • 0027203021 scopus 로고
    • Minimal 16 S rRNA binding site and role of conserved nucleotides in Escherichia coli ribosomal protein S8 recognition
    • Mougel M., Allmang C., Eyermann F., Cachia C., Ehresmann B., Ehresmann C. Minimal 16 S rRNA binding site and role of conserved nucleotides in Escherichia coli ribosomal protein S8 recognition. Eur. J. Biochem. 215:1993;787-792.
    • (1993) Eur. J. Biochem. , vol.215 , pp. 787-792
    • Mougel, M.1    Allmang, C.2    Eyermann, F.3    Cachia, C.4    Ehresmann, B.5    Ehresmann, C.6
  • 32
    • 0016861480 scopus 로고
    • 30 S ribosomal proteins uniquely required for assembly
    • Held W.A., Nomura M. 30 S ribosomal proteins uniquely required for assembly. J. Biol. Chem. 250:1975;3179-3184.
    • (1975) J. Biol. Chem. , vol.250 , pp. 3179-3184
    • Held, W.A.1    Nomura, M.2
  • 33
    • 0022470564 scopus 로고
    • Rapid chemical probing of conformations in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
    • Moazed D., Stern S., Noller H.F. Rapid chemical probing of conformations in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension. J. Mol. Biol. 187:1986;399-416.
    • (1986) J. Mol. Biol. , vol.187 , pp. 399-416
    • Moazed, D.1    Stern, S.2    Noller, H.F.3
  • 34
    • 0033642214 scopus 로고    scopus 로고
    • In vitro reconstitution of 30 S ribosomal subunits using complete set of recombinant proteins
    • Culver G.M., Noller H.F. In vitro reconstitution of 30 S ribosomal subunits using complete set of recombinant proteins. Methods Enzymol. 318:2000;446-460.
    • (2000) Methods Enzymol. , vol.318 , pp. 446-460
    • Culver, G.M.1    Noller, H.F.2
  • 35
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi R., Billeter M., Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14:1996;51-55.
    • (1996) J. Mol. Graph. , vol.14 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3
  • 36
    • 0029044829 scopus 로고
    • The structure of ribosomal RNA: A three-dimensional jigsaw puzzle
    • Brimacombe R. The structure of ribosomal RNA: a three-dimensional jigsaw puzzle. Eur. J. Biochem. 230:1995;365-383.
    • (1995) Eur. J. Biochem. , vol.230 , pp. 365-383
    • Brimacombe, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.