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Volumn 330, Issue 2, 2003, Pages 373-383

Assembly of the central domain of the 30 S ribosomal subunit: Roles for the primary binding ribosomal proteins S15 and S8

Author keywords

16 S ribosomal RNA; 30 S subunit; Assembly; Ribosomal protein S15; Ribosomal protein S8

Indexed keywords

HYDROXYL RADICAL; IRON; PROTEIN SUBUNIT; RIBONUCLEOPROTEIN; RIBOSOME PROTEIN; TRANSFER RNA;

EID: 0038122829     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(03)00586-2     Document Type: Article
Times cited : (23)

References (50)
  • 1
    • 0033429136 scopus 로고    scopus 로고
    • The small ribosomal subunit from Thermus thermophilus at 4.5 Å resolution: Pattern fittings and the identification of a functional site
    • Tocilj A., Schlunzen F., Janell D., Gluhmann M., Hansen H.A., Harms J., et al. The small ribosomal subunit from Thermus thermophilus at 4.5 Å resolution: pattern fittings and the identification of a functional site. Proc. Natl Acad. Sci. USA. 96:1999;14252-14257.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 14252-14257
    • Tocilj, A.1    Schlunzen, F.2    Janell, D.3    Gluhmann, M.4    Hansen, H.A.5    Harms, J.6
  • 3
    • 0034268836 scopus 로고    scopus 로고
    • Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution
    • Schluenzen F., Tocilj A., Zarivach R., Harms J., Gluehmann M., Janell D., et al. Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution. Cell. 102:2000;615-623.
    • (2000) Cell , vol.102 , pp. 615-623
    • Schluenzen, F.1    Tocilj, A.2    Zarivach, R.3    Harms, J.4    Gluehmann, M.5    Janell, D.6
  • 4
    • 0035919727 scopus 로고    scopus 로고
    • Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Purification, crystallization and structure determination
    • Clemons W.M. Jr, Brodersen D.E., McCutcheon J.P., May J.L., Carter A.P., Morgan-Warren R.J., et al. Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: purification, crystallization and structure determination. J. Mol. Biol. 310:2001;827-843.
    • (2001) J. Mol. Biol. , vol.310 , pp. 827-843
    • Clemons W.M., Jr.1    Brodersen, D.E.2    McCutcheon, J.P.3    May, J.L.4    Carter, A.P.5    Morgan-Warren, R.J.6
  • 5
    • 0033607003 scopus 로고    scopus 로고
    • Placement of protein and RNA structures into a 5 Å-resolution map of the 50 S ribosomal subunit
    • Ban N., Nissen P., Hansen J., Capel M., Moore P.B., Steitz T.S. Placement of protein and RNA structures into a 5 Å-resolution map of the 50 S ribosomal subunit. Nature. 400:1999;841-847.
    • (1999) Nature , vol.400 , pp. 841-847
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Capel, M.4    Moore, P.B.5    Steitz, T.S.6
  • 6
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
    • Ban N., Nissen P., Hansen J., Moore P., Steitz T. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science. 289:2000;905-920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.4    Steitz, T.5
  • 7
    • 0027979072 scopus 로고
    • Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16 S rRNA
    • Samaha R.R., O'Brien B., O'Brien T.W., Noller H.F. Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16 S rRNA. Proc. Natl Acad. Sci. USA. 91:1994;7884-7888.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 7884-7888
    • Samaha, R.R.1    O'Brien, B.2    O'Brien, T.W.3    Noller, H.F.4
  • 10
    • 0018360588 scopus 로고
    • Binding sites for ribosomal protein S8 and S15 in the 16 S RNA of Escherichia coli
    • Zimmermann R.A., Singh-Bergmann K. Binding sites for ribosomal protein S8 and S15 in the 16 S RNA of Escherichia coli. Biochim. Biophys. Acta. 563:1979;422-431.
    • (1979) Biochim. Biophys. Acta , vol.563 , pp. 422-431
    • Zimmermann, R.A.1    Singh-Bergmann, K.2
  • 11
    • 0018365929 scopus 로고
    • The structure of the RNA binding site of ribosomal proteins S8 and S15
    • Muller R., Garrett R.A., Noller H.F. The structure of the RNA binding site of ribosomal proteins S8 and S15. J. Biol. Chem. 254:1979;3873-3878.
    • (1979) J. Biol. Chem. , vol.254 , pp. 3873-3878
    • Muller, R.1    Garrett, R.A.2    Noller, H.F.3
  • 12
    • 0024292424 scopus 로고
    • Interaction of ribosomal proteins, S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA
    • Svensson P., Changchien L.M., Craven G.R., Noller H.F. Interaction of ribosomal proteins, S6, S8, S15 and S18 with the central domain of 16 S ribosomal RNA. J. Mol. Biol. 200:1988;301-308.
    • (1988) J. Mol. Biol. , vol.200 , pp. 301-308
    • Svensson, P.1    Changchien, L.M.2    Craven, G.R.3    Noller, H.F.4
  • 13
    • 0029286628 scopus 로고
    • Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA
    • Powers T., Noller H.F. Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA. RNA. 1:1995;194-209.
    • (1995) RNA , vol.1 , pp. 194-209
    • Powers, T.1    Noller, H.F.2
  • 14
    • 0030606880 scopus 로고    scopus 로고
    • Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site
    • Batey R.T., Williamson J.R. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site. J. Mol. Biol. 261:1996;536-549.
    • (1996) J. Mol. Biol. , vol.261 , pp. 536-549
    • Batey, R.T.1    Williamson, J.R.2
  • 15
    • 0030606876 scopus 로고    scopus 로고
    • Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition
    • Batey R.T., Williamson J.R. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition. J. Mol. Biol. 261:1996;550-567.
    • (1996) J. Mol. Biol. , vol.261 , pp. 550-567
    • Batey, R.T.1    Williamson, J.R.2
  • 16
    • 0032559410 scopus 로고    scopus 로고
    • 2+-induced conformational changes in the S15 binding site of 16 S ribosomal RNA
    • 2+-induced conformational changes in the S15 binding site of 16 S ribosomal RNA. J. Mol. Biol. 275:1998;453-464.
    • (1998) J. Mol. Biol. , vol.275 , pp. 453-464
    • Orr, J.W.1    Hagerman, P.J.2    Williamson, J.R.3
  • 17
    • 0036303417 scopus 로고    scopus 로고
    • Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16 S RNA
    • Brodersen D.E., Clemons W.M. Jr, Carter A.P., Wimberly B.T., Ramakrishnan V. Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA. J. Mol. Biol. 316:2002;725-768.
    • (2002) J. Mol. Biol. , vol.316 , pp. 725-768
    • Brodersen, D.E.1    Clemons W.M., Jr.2    Carter, A.P.3    Wimberly, B.T.4    Ramakrishnan, V.5
  • 18
    • 0027203021 scopus 로고
    • Minimal 16 S rRNA binding site and role of conserved nucleotides in Escherichia coli ribosomal protein S8 recognition
    • Mougel M., Allmang C., Eyermann F., Cachia C., Ehresmann B., Ehresmann C. Minimal 16 S rRNA binding site and role of conserved nucleotides in Escherichia coli ribosomal protein S8 recognition. Eur. J. Biochem. 215:1993;787-792.
    • (1993) Eur. J. Biochem. , vol.215 , pp. 787-792
    • Mougel, M.1    Allmang, C.2    Eyermann, F.3    Cachia, C.4    Ehresmann, B.5    Ehresmann, C.6
  • 19
    • 0028238892 scopus 로고
    • The binding site for ribosomal protein S8 in 16 S rRNA and spc mRNA from Escherichia coli: Minimum structural requirements and the effects of single bulged bases on S8-RNA interaction
    • Wu H., Jiang L., Zimmermann R.A. The binding site for ribosomal protein S8 in 16 S rRNA and spc mRNA from Escherichia coli: minimum structural requirements and the effects of single bulged bases on S8-RNA interaction. Nucl. Acids Res. 22:1994;1687-1695.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 1687-1695
    • Wu, H.1    Jiang, L.2    Zimmermann, R.A.3
  • 22
    • 0034615759 scopus 로고    scopus 로고
    • Structure of the S15,S6,S18-rRNA complex: Assembly of the 30 S ribosome central domain
    • Agalarov S.C., Sridhar Prasad G., Funke P.M., Stout C.D., Williamson J.R. Structure of the S15,S6,S18-rRNA complex: assembly of the 30 S ribosome central domain. Science. 288:2000;107-113.
    • (2000) Science , vol.288 , pp. 107-113
    • Agalarov, S.C.1    Sridhar Prasad, G.2    Funke, P.M.3    Stout, C.D.4    Williamson, J.R.5
  • 23
    • 0027171312 scopus 로고
    • Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits
    • Powers T., Daubresse G., Noller H.F. Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits. J. Mol. Biol. 232:1993;362-374.
    • (1993) J. Mol. Biol. , vol.232 , pp. 362-374
    • Powers, T.1    Daubresse, G.2    Noller, H.F.3
  • 25
    • 0028883219 scopus 로고
    • Directed hydroxyl radical probing of 16 S rRNA using Fe(II) tethered to ribosomal protein S4
    • Heilek G.M., Marusak R., Meares C.F., Noller H.F. Directed hydroxyl radical probing of 16 S rRNA using Fe(II) tethered to ribosomal protein S4. Proc. Natl Acad Sci. USA. 92:1995;1113-1116.
    • (1995) Proc. Natl Acad Sci. USA , vol.92 , pp. 1113-1116
    • Heilek, G.M.1    Marusak, R.2    Meares, C.F.3    Noller, H.F.4
  • 26
    • 0029853765 scopus 로고    scopus 로고
    • Directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S13 using tethered Fe(II)
    • Heilek G.M., Noller H.F. Directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S13 using tethered Fe(II). RNA. 2:1996;597-602.
    • (1996) RNA , vol.2 , pp. 597-602
    • Heilek, G.M.1    Noller, H.F.2
  • 27
    • 0029896213 scopus 로고    scopus 로고
    • Site-directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S5
    • Heilek G.M., Noller H.F. Site-directed hydroxyl radical probing of the rRNA neighborhood of ribosomal protein S5. Science. 272:1996;1659-1662.
    • (1996) Science , vol.272 , pp. 1659-1662
    • Heilek, G.M.1    Noller, H.F.2
  • 28
    • 0032545187 scopus 로고    scopus 로고
    • Ribosomal protein L15 as a probe of 50 S ribosomal subunit structure
    • Lieberman K.R., Noller H.F. Ribosomal protein L15 as a probe of 50 S ribosomal subunit structure. J. Mol. Biol. 284:1998;1367-1378.
    • (1998) J. Mol. Biol. , vol.284 , pp. 1367-1378
    • Lieberman, K.R.1    Noller, H.F.2
  • 29
    • 0031730066 scopus 로고    scopus 로고
    • Directed hydroxyl radical probing of 16 S ribosomal RNA in ribosomes containing Fe(II) tethered to ribosomal protein S20
    • Culver G.M., Noller H.F. Directed hydroxyl radical probing of 16 S ribosomal RNA in ribosomes containing Fe(II) tethered to ribosomal protein S20. RNA. 4:1998;1471-1480.
    • (1998) RNA , vol.4 , pp. 1471-1480
    • Culver, G.M.1    Noller, H.F.2
  • 30
    • 0032849011 scopus 로고    scopus 로고
    • Identification of an RNA-protein bridge spanning the ribosomal subunit interface
    • Culver G.M., Cate J.H., Yusupova G.Z., Yusopov M.M., Noller H.F. Identification of an RNA-protein bridge spanning the ribosomal subunit interface. Science. 285:1999;2133-2135.
    • (1999) Science , vol.285 , pp. 2133-2135
    • Culver, G.M.1    Cate, J.H.2    Yusupova, G.Z.3    Yusopov, M.M.4    Noller, H.F.5
  • 31
    • 0033582719 scopus 로고    scopus 로고
    • Probing the rRNA environment of ribosomal protein S5 across the subunit interface and inside the 30 S subunit using tethered Fe(II)
    • Culver G.M., Heilek G.M., Noller H.F. Probing the rRNA environment of ribosomal protein S5 across the subunit interface and inside the 30 S subunit using tethered Fe(II). J. Mol. Biol. 286:1999;355-364.
    • (1999) J. Mol. Biol. , vol.286 , pp. 355-364
    • Culver, G.M.1    Heilek, G.M.2    Noller, H.F.3
  • 32
    • 0033522982 scopus 로고    scopus 로고
    • Mapping the ribosomal RNA neighborhood of protein L11 by directed hydroxyl radical probing
    • Holmberg L., Noller H.F. Mapping the ribosomal RNA neighborhood of protein L11 by directed hydroxyl radical probing. J. Mol. Biol. 289:1999;223-233.
    • (1999) J. Mol. Biol. , vol.289 , pp. 223-233
    • Holmberg, L.1    Noller, H.F.2
  • 34
    • 0034090377 scopus 로고    scopus 로고
    • The location of protein S8 and surrounding elements of 16 S rRNA in the 70 S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography
    • Lancaster L., Culver G., Yusopova G.Z., Cate J.H., Yusopov M.M., Noller H.F. The location of protein S8 and surrounding elements of 16 S rRNA in the 70 S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography. RNA. 6:2000;717-729.
    • (2000) RNA , vol.6 , pp. 717-729
    • Lancaster, L.1    Culver, G.2    Yusopova, G.Z.3    Cate, J.H.4    Yusopov, M.M.5    Noller, H.F.6
  • 36
    • 0000048117 scopus 로고
    • Iron chelate mediated proteolysis - Protein structure dependence
    • Rana T., Meares C. Iron chelate mediated proteolysis - protein structure dependence. J. Am. Chem. Soc. 112:1991;2457-2458.
    • (1991) J. Am. Chem. Soc. , vol.112 , pp. 2457-2458
    • Rana, T.1    Meares, C.2
  • 37
    • 0031026421 scopus 로고    scopus 로고
    • Solution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus
    • Berglund H., Rak A., Serganov A., Garber M., Hard T. Solution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus. Nature Struct. Biol. 4:1997;20-23.
    • (1997) Nature Struct. Biol. , vol.4 , pp. 20-23
    • Berglund, H.1    Rak, A.2    Serganov, A.3    Garber, M.4    Hard, T.5
  • 38
    • 13144276305 scopus 로고    scopus 로고
    • Conformational variability of the N-terminal helix in the structure of ribosomal protein S15
    • Clemons W.M.J., Davies C., White S.W., Ramakrishnan V. Conformational variability of the N-terminal helix in the structure of ribosomal protein S15. Structure. 6:1998;429-438.
    • (1998) Structure , vol.6 , pp. 429-438
    • Clemons, W.M.J.1    Davies, C.2    White, S.W.3    Ramakrishnan, V.4
  • 39
    • 0033057324 scopus 로고    scopus 로고
    • Efficient reconstitution of functional Escherichia coli 30 S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins
    • Culver G.M., Noller H.F. Efficient reconstitution of functional Escherichia coli 30 S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins. RNA. 5:1999;832-843.
    • (1999) RNA , vol.5 , pp. 832-843
    • Culver, G.M.1    Noller, H.F.2
  • 40
    • 0022470564 scopus 로고
    • Rapid chemical probing of conformations in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
    • Moazed D., Stern S., Noller H.F. Rapid chemical probing of conformations in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension. J. Mol. Biol. 187:1986;399-416.
    • (1986) J. Mol. Biol. , vol.187 , pp. 399-416
    • Moazed, D.1    Stern, S.2    Noller, H.F.3
  • 41
    • 0033655152 scopus 로고    scopus 로고
    • Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes
    • Culver G.M., Noller H.F. Directed hydroxyl radical probing of RNA from iron(II) tethered to proteins in ribonucleoprotein complexes. Methods Enzymol. 318:2000;461-475.
    • (2000) Methods Enzymol. , vol.318 , pp. 461-475
    • Culver, G.M.1    Noller, H.F.2
  • 42
    • 2942571539 scopus 로고    scopus 로고
    • The Comparative RNA Web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D'Souza L.M., Du Y., et al. The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BioMed. Central Bioinformat. 3:2002;2.
    • (2002) BioMed. Central Bioinformat. , vol.3 , pp. 2
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3    Collett, J.R.4    D'Souza, L.M.5    Du, Y.6
  • 43
    • 0030657775 scopus 로고    scopus 로고
    • Mapping the inside of the ribosome with an RNA helical ruler
    • Joseph S., Weiser B., Noller H.F. Mapping the inside of the ribosome with an RNA helical ruler. Science. 278:1997;1093-1098.
    • (1997) Science , vol.278 , pp. 1093-1098
    • Joseph, S.1    Weiser, B.2    Noller, H.F.3
  • 44
    • 0033642214 scopus 로고    scopus 로고
    • In vitro reconstitution of 30 S ribosomal subunits using complete set of recombinant proteins
    • Culver G.M., Noller H.F. In vitro reconstitution of 30 S ribosomal subunits using complete set of recombinant proteins. Methods Enzymol. 318:2000;446-460.
    • (2000) Methods Enzymol. , vol.318 , pp. 446-460
    • Culver, G.M.1    Noller, H.F.2
  • 45
    • 2642699794 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel T.A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl Acad. Sci. USA. 82:1985;488-492.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 488-492
    • Kunkel, T.A.1
  • 46
    • 0003098935 scopus 로고    scopus 로고
    • Footprinting and modification-interference analysis of binding sites on RNA
    • C.W.J. Smith. New York: Oxford University Press
    • Merryman C., Noller H.F. Footprinting and modification-interference analysis of binding sites on RNA. Smith C.W.J. RNA:Protein Interactions. A Practical Approach. 1998;237-253 Oxford University Press, New York.
    • (1998) RNA:Protein Interactions. A Practical Approach , pp. 237-253
    • Merryman, C.1    Noller, H.F.2
  • 47
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi R., Billeter M., Wuthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14:1996;51-54.
    • (1996) J. Mol. Graph. , vol.14 , pp. 51-54
    • Koradi, R.1    Billeter, M.2    Wuthrich, K.3
  • 48
    • 36949051443 scopus 로고
    • Assembly mapping of 30S ribosomal proteins in E. coli
    • Mizushima S., Nomura M. Assembly mapping of 30S ribosomal proteins in E. coli. Nature. 226:1970;1214-1218.
    • (1970) Nature , vol.226 , pp. 1214-1218
    • Mizushima, S.1    Nomura, M.2
  • 49
    • 0016153699 scopus 로고
    • Assembly mapping of 30 S Ribosomal proteins from Escherichia coli
    • Held W.A., Ballou B., Mizushima S., Nomura M. Assembly mapping of 30 S Ribosomal proteins from Escherichia coli. J. Biol. Chem. 249:1974;3103-3111.
    • (1974) J. Biol. Chem. , vol.249 , pp. 3103-3111
    • Held, W.A.1    Ballou, B.2    Mizushima, S.3    Nomura, M.4
  • 50
    • 0029044829 scopus 로고
    • The Structure of ribosomal RNA: A three dimensional jigsaw puzzle
    • Brimacombe R. The Structure of ribosomal RNA: a three dimensional jigsaw puzzle. Eur. J. Biochem. 230:1995;365-383.
    • (1995) Eur. J. Biochem. , vol.230 , pp. 365-383
    • Brimacombe, R.1


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