Energetics of protein thermodynamic cooperativity: Contributions of local and nonlocal interactions

Polymer

Volumn 45, Issue 2, 2004, Pages 623-632

  Knott, Michael ^a   Kaya, Hüseyin ^a   Chan, Hue Sun ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Calorimetry; G models; Two state cooperativity

Indexed keywords

CALORIMETRY; CONFORMATIONS; ENTHALPY; MATHEMATICAL MODELS; POLYMERS; THERMODYNAMICS;

DENATURATION; LATTICE MODEL; NONLOCAL INTERACTIONS;

PROTEINS;

PROTEIN;

ARTICLE; CALORIMETRY; CONFORMATIONAL TRANSITION; ENERGY; ENTHALPY; MEASUREMENT; MOLECULAR INTERACTION; MOLECULAR MODEL; PROTEIN DETERMINATION; PROTEIN LOCALIZATION; THERMODYNAMICS;

PROTEIN;

EID: 0347753598     PISSN: 00323861     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.polymer.2003.10.068     Document Type: Article

References (62)

1. Chan HS, Kaya H, Shimizu S. In: Jiang T, Xu Y, Zhang MQ, editors. Current topics in computational molecular biology. Cambridge, MA: MIT Press; 2002. p. 403-47.
2. Jackson SE, Fersht AR. Biochemistry 1991;30:10428-35.
3. Baker D. Nature 2000;405:39-42.
4. Chan HS. Proteins 2000;40:543-71.
5. Kaya H, Chan HS. Proteins 2000;40:637-61. Erratum: Proteins 2001; 43:523.
6. Kaya H, Chan HS. Proteins 2000;40:637-61. Erratum: Proteins 2001; 43:523.
7. Kaya H, Chan HS. Phys Rev Lett 2000;85:4823-6.
8. Kaya H, Chan HS. J Mol Biol 2002;315:899-909.
9. Kaya H, Chan HS. J Mol Biol 2003;326:911-31.
10. Taketomi H, Ueda Y, Gō N. Int J Pept Protein Res 1975;7:445-59.
11. Clementi C, Nymeyer H, Onuchic JN. J Mol Biol 2000;298:937-53.
12. Micheletti C, Banavar JR, Maritan A, Seno F. Phys Rev Lett 1999;82: 3372-5.
13. Zhou Y, Karplus M. Nature 1999;401:400-3.
14. Portman JJ, Takada S, Wolynes PG. J Chem Phys 2001;114:5082-96.
15. Haliloglu T, Bahar I, Erman B. Phys Rev Lett 1997;79:3090-3.
16. Keskin O, Bahar I, Flatow D, Covell DG, Jernigan RL. Biochemistry 2002;41:491-501.
17. Isin B, Doruker P, Bahar I. Biophys J 2002;82:569-81.
18. Micheletti C, Lattanzi G, Maritan A. J Mol Biol 2002;321:909-21.
19. Jacobs DJ, Radar AJ, Kuhn LA, Thorpe MF. Proteins 2001;44: 150-65.
20. Kaya H, Chan HS. Phys Rev Lett 2003;90:258104.
21. Gō N, Taketomi H. Proc Natl Acad Sci USA 1978;75:559-63.
22. Dill KA. Biochemistry 1990;29:7133-55.
23. Abkevich VI, Gutin AM, Shakhnovich EI. J Mol Biol 1995;252: 460-71.
24. Chan HS. Nature 1998;392:761-3.
25. Baldwin RL, Rose GD. Trends Biochem Sci 1999;24:26-33.
26. Portman JJ, Takada S, Wolynes PG. J Chem Phys 2001;114:5069-81.
27. de Gennes PG. J Phys Lett (Paris) 1975;36:L55-7.
28. Doniach S, Garel T, Orland H. J Chem Phys 1996;105:1601-8.
29. Bastolla U, Grassberger P. J Stat Phys 1997;89:1061-78.
30. Doye JPK, Sear RP, Frenkel D. J Chem Phys 1998;108:2134-42.
31. Koga N, Takada S. J Mol Biol 2001;313:171-80.
32. Brant DA, Miller WG, Flory PJ. J Mol Biol 1967;23:47-65.
33. Veitshans T, Klimov D, Thirumalai D. Fold Des 1997;2:1-22.
34. Allen MP, Tildesley DJ. Computer simulation of liquids. Oxford: Oxford University Press; 1987.
35. Kaya H, Chan HS. Proteins 2003;52:510-23.
36. Kaya H, Chan HS. Proteins 2003;52:524-33.
37. Yang D, Mok YK, Forman-Kay JD, Farrow NA, Kay LE. J Mol Biol 1997;272:790-804.
38. Privalov PL, Khechinashvili NN. J Mol Biol 1974;86:665-84.
39. Tiktopulo EI, Bychkova VE, Rička J, Ptitsyn OB. Macromolecules 1994;27:2879-82.
40. Crippen GM, Chhadjer M. J Chem Phys 2002;116:2261-8.
41. Jang H, Hall CK, Zhou Y. Biophys J 2002;82:646-59.
42. Pokarowski P, Kolinski A, Skolnick J. Biophys J 2003;84:1518-26.
43. Clementi C, Garcia AE, Onuchic JN. J Mol Biol 2003;326:933-54.
44. Dragan AI, Privalov PL. J Mol Biol 2002;321:891-908.
45. Sosnick TR, Trewhella J. Biochemistry 1992;31:8329-35.
46. Hagihara Y, Hoshino M, Hamada D, Kataoka M, Goto Y. Fold Des 1998;3:195-201.
47. Millet IS, Townsley LE, Chiti F, Doniach S, Plaxco KW. Biochemistry 2002;41:321-5.
48. Choy WY, Mulder FAA, Crowhurst KA, Muhandiram DR, Millett IS, Doniach S, Forman-Kay JD, Kay LE. J Mol Biol 2002;316:101-12.
49. Shimizu S, Chan HS. Proteins 2002;49:560-6.
50. Goldenberg DP. J Mol Biol 2003;326:1615-33.
51. Jewett AI, Pande VS, Plaxco KW. J Mol Biol 2003;326:247-53.
52. Chan HS, Shimizu S, Kaya H. Methods Enzymol 2004; in press.
53. Vendruscolo M, Paci E. Curr Opin Struct Biol 2003;13:82-7.
54. Head-Gordon T, Brown S. Curr Opin Struct Biol 2003;13:160-7.
55. Uversky VN, Fink AL. FEBS Lett 2002;515:79-83.
56. Plotkin SS. Proteins 2001;45:337-45.
57. Cieplak M, Hoang TX. Int J Mod Phys C 2002;13:1231-42.
58. Cieplak M, Hoang TX. Biophys J 2003;84:475-88.
59. Klimov DK, Thirumalai D. Fold Des 1998;3:127-39.
60. Li L, Shakhnovich EI. Proc Natl Acad Sci USA 2001;98:13014-8.
61. Favrin G, Irbäck A, Wallin S. Proteins 2002;47:99-105.
62. Zhou Y, Linhananta A. J Chem Phys 2002;117:8983-95.