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Volumn 30, Issue 1, 2004, Pages 187-200

Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data

Author keywords

Aves; Barbets; Bayesian analysis; Capitonidae; Convergent evolution; Fibrinogen; Ramphastidae

Indexed keywords

AVES; CALORHAMPHUS; CAPITONIDAE; GYMNOBUCCO; PICIFORMES; RAMPHASTIDAE; SEMNORNIS;

EID: 0347724024     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(03)00179-9     Document Type: Article
Times cited : (50)

References (57)
  • 2
    • 0034079418 scopus 로고    scopus 로고
    • The impact of parsimony weighting schemes on inferred relationships among toucans and neotropical barbets (Aves: Piciformes)
    • Barker, F.K., Lanyon, S.M., 2000. The impact of parsimony weighting schemes on inferred relationships among toucans and neotropical barbets (Aves: Piciformes). Mol. Phylogenet. Evol. 15, 215-234.
    • (2000) Mol. Phylogenet. Evol. , vol.15 , pp. 215-234
    • Barker, F.K.1    Lanyon, S.M.2
  • 3
    • 0036623259 scopus 로고    scopus 로고
    • Model misspecification and probabilistic tests of topology: Evidence from empirical data sets
    • Buckley, T.R., 2002. Model misspecification and probabilistic tests of topology: evidence from empirical data sets. Syst. Biol. 51, 509-523.
    • (2002) Syst. Biol. , vol.51 , pp. 509-523
    • Buckley, T.R.1
  • 4
    • 0036005521 scopus 로고    scopus 로고
    • Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera
    • Buckley, T.R., Arensburger, P., Simon, C., Chambers, G.K., 2002. Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera. Syst. Biol. 51, 4-18.
    • (2002) Syst. Biol. , vol.51 , pp. 4-18
    • Buckley, T.R.1    Arensburger, P.2    Simon, C.3    Chambers, G.K.4
  • 5
    • 0036213207 scopus 로고    scopus 로고
    • The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support
    • Buckley, T.R., Cunningham, C.W., 2002. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Mol. Biol. Evol. 19, 394-405.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 394-405
    • Buckley, T.R.1    Cunningham, C.W.2
  • 7
    • 0001415774 scopus 로고
    • Anatomy and evolution of the feeding apparatus in the Avian orders Coraciiformes and Piciformes
    • Burton, P., 1984. Anatomy and evolution of the feeding apparatus in the Avian orders Coraciiformes and Piciformes. Bull. Br. Mus. (Nat. Hist.) Zool. 47, 331-443.
    • (1984) Bull. Br. Mus. (Nat. Hist.) Zool. , vol.47 , pp. 331-443
    • Burton, P.1
  • 8
  • 9
    • 12044258419 scopus 로고
    • Weighting, partitioning, and combining characters in phylogenetic analysis
    • Chippindale, P.T., Wiens, J.J., 1994. Weighting, partitioning, and combining characters in phylogenetic analysis. Syst. Biol. 43, 278-287.
    • (1994) Syst. Biol. , vol.43 , pp. 278-287
    • Chippindale, P.T.1    Wiens, J.J.2
  • 10
    • 84985406676 scopus 로고
    • The distribution of forest passerine birds and quaternary climatic change in tropical Africa
    • Diamond, A.W., Hamilton, A.C., 1980. The distribution of forest passerine birds and quaternary climatic change in tropical Africa. J. Zool. 191, 379-402.
    • (1980) J. Zool. , vol.191 , pp. 379-402
    • Diamond, A.W.1    Hamilton, A.C.2
  • 13
    • 0029468060 scopus 로고
    • Constructing a significance test for incongruence
    • Farris, J.S., Kallersjo, M., Kluge, A.G., Bult, C., 1995. Constructing a significance test for incongruence. Syst. Biol. 44, 570-572.
    • (1995) Syst. Biol. , vol.44 , pp. 570-572
    • Farris, J.S.1    Kallersjo, M.2    Kluge, A.G.3    Bult, C.4
  • 14
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401-410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 15
    • 77956889087 scopus 로고
    • Reversible jump Markov chain computation and Bayesian model determination
    • Green, P.J., 1995. Reversible jump Markov chain computation and Bayesian model determination. Biometrika 82, 711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 16
    • 1642287051 scopus 로고
    • Speciation in Amazonian forest birds
    • Haffer, J., 1969. Speciation in Amazonian forest birds. Science 165, 131-137.
    • (1969) Science , vol.165 , pp. 131-137
    • Haffer, J.1
  • 17
    • 0001660330 scopus 로고
    • Reweaving the tapestry: What can we learn from Sibley and Ahlquist (1990)?
    • Harshman, J., 1994. Reweaving the tapestry: what can we learn from Sibley and Ahlquist (1990)? Auk 111, 377-388.
    • (1994) Auk , vol.111 , pp. 377-388
    • Harshman, J.1
  • 19
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings, W.K., 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57, 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 20
    • 0032023889 scopus 로고    scopus 로고
    • Taxonomic sampling, phylogenetic accuracy, and investigator bias
    • Hillis, D.M., 1998. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst. Biol. 47, 3-8.
    • (1998) Syst. Biol. , vol.47 , pp. 3-8
    • Hillis, D.M.1
  • 21
    • 0031436890 scopus 로고    scopus 로고
    • Phylogeny estimation and hypothesis testing using maximum likelihood
    • Huelsenbeck, J.P., Crandall, K.A., 1997. Phylogeny estimation and hypothesis testing using maximum likelihood. Ann. Rev. Ecol. Syst. 28, 437-466.
    • (1997) Ann. Rev. Ecol. Syst. , vol.28 , pp. 437-466
    • Huelsenbeck, J.P.1    Crandall, K.A.2
  • 22
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference in Phylogeny
    • Huelsenbeck, J.P., Larget, B., Miller, R.E., Ronquist, F., 2002. Potential applications and pitfalls of Bayesian inference in Phylogeny. Syst. Biol. 51, 673-688.
    • (2002) Syst. Biol. , vol.51 , pp. 673-688
    • Huelsenbeck, J.P.1    Larget, B.2    Miller, R.E.3    Ronquist, F.4
  • 23
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J.P., Ronquist, F., 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 24
    • 0033936592 scopus 로고    scopus 로고
    • Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes)
    • Johnson, K.P., Clayton, D.H., 2000. Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes). Mol. Phylogenet. Evol. 14, 141-151.
    • (2000) Mol. Phylogenet. Evol. , vol.14 , pp. 141-151
    • Johnson, K.P.1    Clayton, D.H.2
  • 26
    • 0001250689 scopus 로고
    • The stochastic mode of molecular evolution: What consequences for systematic investigations
    • Lanyon, S.M., 1988. The stochastic mode of molecular evolution: what consequences for systematic investigations. Auk 105, 565-573.
    • (1988) Auk , vol.105 , pp. 565-573
    • Lanyon, S.M.1
  • 27
    • 0027975918 scopus 로고
    • Reexamination of barbet monophyly using mitochondrial-DNA sequence data
    • Lanyon, S.M., Hall, J.G., 1994. Reexamination of barbet monophyly using mitochondrial-DNA sequence data. Auk 111, 389-397.
    • (1994) Auk , vol.111 , pp. 389-397
    • Lanyon, S.M.1    Hall, J.G.2
  • 28
    • 0004209471 scopus 로고
    • Genetic variation in piciform birds: Monophyly and generic and familial relationships
    • Lanyon, S.M., Zink, R.M., 1987. Genetic variation in piciform birds: monophyly and generic and familial relationships. Auk 104, 724-732.
    • (1987) Auk , vol.104 , pp. 724-732
    • Lanyon, S.M.1    Zink, R.M.2
  • 29
    • 0036005516 scopus 로고    scopus 로고
    • Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): A comparison of parsimony, likelihood, and Bayesian approaches
    • Leaché, A.D., Reeder, T.W., 2002. Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Syst. Biol. 51, 44-68.
    • (2002) Syst. Biol. , vol.51 , pp. 44-68
    • Leaché, A.D.1    Reeder, T.W.2
  • 32
    • 0028156627 scopus 로고
    • Shortcomings of the cytochrome b gene as a molecular marker
    • Meyer, A., 1994. Shortcomings of the cytochrome b gene as a molecular marker. Trends Ecol. Evol. 9, 278-280.
    • (1994) Trends Ecol. Evol. , vol.9 , pp. 278-280
    • Meyer, A.1
  • 33
    • 0002821051 scopus 로고    scopus 로고
    • The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b
    • Mindell, D.P. (Ed.), Academic Press, San Diego
    • Moore, W.S., DeFilippis, V.R., 1997. The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b. In: Mindell, D.P. (Ed.), Avian Molecular Evolution and Systematics. Academic Press, San Diego, pp. 84-120.
    • (1997) Avian Molecular Evolution and Systematics , pp. 84-120
    • Moore, W.S.1    DeFilippis, V.R.2
  • 34
    • 0000614810 scopus 로고
    • Evidence for a polyphyletic origin of the Piciformes
    • Olson, S.L., 1983. Evidence for a polyphyletic origin of the Piciformes. Auk 100, 126-133.
    • (1983) Auk , vol.100 , pp. 126-133
    • Olson, S.L.1
  • 35
    • 0033161714 scopus 로고    scopus 로고
    • A molecular phylogeny of the New World orioles (Icterus): The importance of dense taxon sampling
    • Omland, K.E., Lanyon, S.M., Fritz, S.J., 1999. A molecular phylogeny of the New World orioles (Icterus): the importance of dense taxon sampling. Mol. Phylogenet. Evol. 12, 224-239.
    • (1999) Mol. Phylogenet. Evol. , vol.12 , pp. 224-239
    • Omland, K.E.1    Lanyon, S.M.2    Fritz, S.J.3
  • 36
    • 0032023887 scopus 로고    scopus 로고
    • Sensitivity of phylogeny estimation to taxonomic sampling
    • Poe, S., 1998. Sensitivity of phylogeny estimation to taxonomic sampling. Syst. Biol. 47, 18-31.
    • (1998) Syst. Biol. , vol.47 , pp. 18-31
    • Poe, S.1
  • 37
    • 0036699885 scopus 로고    scopus 로고
    • Increased taxon sampling is advantageous for phylogenetic inference
    • Pollock, D.D., Zwickl, D.J., McGuire, J.A., Hillis, D.M., 2002. Increased taxon sampling is advantageous for phylogenetic inference. Syst. Biol. 51, 664-671.
    • (2002) Syst. Biol. , vol.51 , pp. 664-671
    • Pollock, D.D.1    Zwickl, D.J.2    McGuire, J.A.3    Hillis, D.M.4
  • 38
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 39
    • 38249031182 scopus 로고
    • Phylogenetic interrelationships of the barbets (Aves: Capitonidae) and toucans (Aves: Ramphastidae) based on morphology with comparisons to DNA-DNA hybridization
    • Prum, R.O., 1988. Phylogenetic interrelationships of the barbets (Aves: Capitonidae) and toucans (Aves: Ramphastidae) based on morphology with comparisons to DNA-DNA hybridization. Zool. J. Linn. Soc. 92, 313-343.
    • (1988) Zool. J. Linn. Soc. , vol.92 , pp. 313-343
    • Prum, R.O.1
  • 40
    • 0031255043 scopus 로고    scopus 로고
    • The utility of DNA sequences of an intron from the beta-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae)
    • Prychitko, T.M., Moore, W.S., 1997. The utility of DNA sequences of an intron from the beta-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae). Mol. Phylogenet. Evol. 8, 193-204.
    • (1997) Mol. Phylogenet. Evol. , vol.8 , pp. 193-204
    • Prychitko, T.M.1    Moore, W.S.2
  • 41
    • 0033934006 scopus 로고    scopus 로고
    • Comparative evolution of the mitochondrial Cytochrome b gene and nuclear beta-fibrinogen intron 7 in woodpeckers
    • Prychitko, T.M., Moore, W.S., 2000. Comparative evolution of the mitochondrial Cytochrome b gene and nuclear beta-fibrinogen intron 7 in woodpeckers. Mol. Biol. Evol. 17, 1101-1111.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1101-1111
    • Prychitko, T.M.1    Moore, W.S.2
  • 42
    • 0000193848 scopus 로고
    • The diets of Neotropical trogons, motmots, barbets and toucans
    • Remsen, J.V., Hyde, M.A., Chapman, A., 1993. The diets of Neotropical trogons, motmots, barbets and toucans. Condor 95, 178-192.
    • (1993) Condor , vol.95 , pp. 178-192
    • Remsen, J.V.1    Hyde, M.A.2    Chapman, A.3
  • 43
    • 0347373835 scopus 로고
    • The barbets
    • Ripley, S.D., 1945. The barbets. Auk 62, 542-563.
    • (1945) Auk , vol.62 , pp. 542-563
    • Ripley, S.D.1
  • 44
    • 0035845536 scopus 로고    scopus 로고
    • Incomplete taxon sampling is not a problem for phylogenetic inference
    • Rosenberg, M.S., Kumar, S., 2001. Incomplete taxon sampling is not a problem for phylogenetic inference. Proc. Nat. Acad. Sci. USA 98, 10751-10756.
    • (2001) Proc. Nat. Acad. Sci. USA , vol.98 , pp. 10751-10756
    • Rosenberg, M.S.1    Kumar, S.2
  • 45
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H., Hasegawa, M., 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 49
    • 0000251065 scopus 로고
    • The phylogenetic relationships of the Piciformes (Class Aves)
    • Simpson, S.F., Cracraft, J., 1981. The phylogenetic relationships of the Piciformes (Class Aves). Auk 98, 481-494.
    • (1981) Auk , vol.98 , pp. 481-494
    • Simpson, S.F.1    Cracraft, J.2
  • 50
    • 0002618746 scopus 로고    scopus 로고
    • Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics
    • Sullivan, J., Swofford, D.L., 1997. Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics. J. Mammal Evol. 4 (2), 77-86.
    • (1997) J. Mammal Evol. , vol.4 , Issue.2 , pp. 77-86
    • Sullivan, J.1    Swofford, D.L.2
  • 51
    • 0000983048 scopus 로고
    • Hind limb morphology, phylogeny, classification of the Piciformes
    • Swierczewski, E.V., Raikow, R.J., 1981. Hind limb morphology, phylogeny, classification of the Piciformes. Auk 98, 466-480.
    • (1981) Auk , vol.98 , pp. 466-480
    • Swierczewski, E.V.1    Raikow, R.J.2
  • 53
    • 0036368188 scopus 로고    scopus 로고
    • Phylogeny of the tree swallow genus, Tachycineta (Aves: Hirundinidae), by Bayesian analysis of mitochondrial DNA sequences
    • Whittingham, L.A., Slikas, B., Winkler, D.W., Sheldon, F.H., 2002. Phylogeny of the tree swallow genus, Tachycineta (Aves: Hirundinidae), by Bayesian analysis of mitochondrial DNA sequences. Mol. Phylogenet. Evol. 22, 430-441.
    • (2002) Mol. Phylogenet. Evol. , vol.22 , pp. 430-441
    • Whittingham, L.A.1    Slikas, B.2    Winkler, D.W.3    Sheldon, F.H.4
  • 54
    • 0036431235 scopus 로고    scopus 로고
    • Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
    • Wilcox, T.P., Zwickl, D.J., Heath, T.A., Hillis, D.M., 2002. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Mol. Phylogenet. Evol. 25, 361-371.
    • (2002) Mol. Phylogenet. Evol. , vol.25 , pp. 361-371
    • Wilcox, T.P.1    Zwickl, D.J.2    Heath, T.A.3    Hillis, D.M.4
  • 55
    • 0027132974 scopus 로고
    • Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang, Z.H., 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10, 1396-1401.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1396-1401
    • Yang, Z.H.1
  • 56
    • 0032028624 scopus 로고    scopus 로고
    • On the best evolutionary rate for phylogenetic analysis
    • Yang, Z.H., 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47, 125-133.
    • (1998) Syst. Biol. , vol.47 , pp. 125-133
    • Yang, Z.H.1
  • 57
    • 0036699481 scopus 로고    scopus 로고
    • Increased taxon sampling greatly reduces phylogenetic error
    • Zwickl, D.J., Hillis, D.M., 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51, 588-598.
    • (2002) Syst. Biol. , vol.51 , pp. 588-598
    • Zwickl, D.J.1    Hillis, D.M.2


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