-
2
-
-
0034079418
-
The impact of parsimony weighting schemes on inferred relationships among toucans and neotropical barbets (Aves: Piciformes)
-
Barker, F.K., Lanyon, S.M., 2000. The impact of parsimony weighting schemes on inferred relationships among toucans and neotropical barbets (Aves: Piciformes). Mol. Phylogenet. Evol. 15, 215-234.
-
(2000)
Mol. Phylogenet. Evol.
, vol.15
, pp. 215-234
-
-
Barker, F.K.1
Lanyon, S.M.2
-
3
-
-
0036623259
-
Model misspecification and probabilistic tests of topology: Evidence from empirical data sets
-
Buckley, T.R., 2002. Model misspecification and probabilistic tests of topology: evidence from empirical data sets. Syst. Biol. 51, 509-523.
-
(2002)
Syst. Biol.
, vol.51
, pp. 509-523
-
-
Buckley, T.R.1
-
4
-
-
0036005521
-
Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera
-
Buckley, T.R., Arensburger, P., Simon, C., Chambers, G.K., 2002. Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera. Syst. Biol. 51, 4-18.
-
(2002)
Syst. Biol.
, vol.51
, pp. 4-18
-
-
Buckley, T.R.1
Arensburger, P.2
Simon, C.3
Chambers, G.K.4
-
5
-
-
0036213207
-
The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support
-
Buckley, T.R., Cunningham, C.W., 2002. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Mol. Biol. Evol. 19, 394-405.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 394-405
-
-
Buckley, T.R.1
Cunningham, C.W.2
-
6
-
-
12044257391
-
Partitioning and combining data in phylogenetic analysis
-
Bull, J.J., Huelsenbeck, J.P., Cunningham, C.W., Swofford, D.L., Waddell, P.J., 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42, 384-397.
-
(1993)
Syst. Biol.
, vol.42
, pp. 384-397
-
-
Bull, J.J.1
Huelsenbeck, J.P.2
Cunningham, C.W.3
Swofford, D.L.4
Waddell, P.J.5
-
7
-
-
0001415774
-
Anatomy and evolution of the feeding apparatus in the Avian orders Coraciiformes and Piciformes
-
Burton, P., 1984. Anatomy and evolution of the feeding apparatus in the Avian orders Coraciiformes and Piciformes. Bull. Br. Mus. (Nat. Hist.) Zool. 47, 331-443.
-
(1984)
Bull. Br. Mus. (Nat. Hist.) Zool.
, vol.47
, pp. 331-443
-
-
Burton, P.1
-
8
-
-
0345511137
-
The birds of the Belgian Congo pt. 2
-
Chapin, J.P., 1939. The birds of the Belgian Congo pt. 2. Bull. Am. Mus. Nat. Hist., 75.
-
(1939)
Bull. Am. Mus. Nat. Hist.
, pp. 75
-
-
Chapin, J.P.1
-
9
-
-
12044258419
-
Weighting, partitioning, and combining characters in phylogenetic analysis
-
Chippindale, P.T., Wiens, J.J., 1994. Weighting, partitioning, and combining characters in phylogenetic analysis. Syst. Biol. 43, 278-287.
-
(1994)
Syst. Biol.
, vol.43
, pp. 278-287
-
-
Chippindale, P.T.1
Wiens, J.J.2
-
10
-
-
84985406676
-
The distribution of forest passerine birds and quaternary climatic change in tropical Africa
-
Diamond, A.W., Hamilton, A.C., 1980. The distribution of forest passerine birds and quaternary climatic change in tropical Africa. J. Zool. 191, 379-402.
-
(1980)
J. Zool.
, vol.191
, pp. 379-402
-
-
Diamond, A.W.1
Hamilton, A.C.2
-
12
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J.S., Kallersjo, M., Kluge, A.G., Bult, C., 1994. Testing significance of incongruence. Cladistics 10, 315-319.
-
(1994)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
13
-
-
0029468060
-
Constructing a significance test for incongruence
-
Farris, J.S., Kallersjo, M., Kluge, A.G., Bult, C., 1995. Constructing a significance test for incongruence. Syst. Biol. 44, 570-572.
-
(1995)
Syst. Biol.
, vol.44
, pp. 570-572
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
14
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein, J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
15
-
-
77956889087
-
Reversible jump Markov chain computation and Bayesian model determination
-
Green, P.J., 1995. Reversible jump Markov chain computation and Bayesian model determination. Biometrika 82, 711-732.
-
(1995)
Biometrika
, vol.82
, pp. 711-732
-
-
Green, P.J.1
-
16
-
-
1642287051
-
Speciation in Amazonian forest birds
-
Haffer, J., 1969. Speciation in Amazonian forest birds. Science 165, 131-137.
-
(1969)
Science
, vol.165
, pp. 131-137
-
-
Haffer, J.1
-
17
-
-
0001660330
-
Reweaving the tapestry: What can we learn from Sibley and Ahlquist (1990)?
-
Harshman, J., 1994. Reweaving the tapestry: what can we learn from Sibley and Ahlquist (1990)? Auk 111, 377-388.
-
(1994)
Auk
, vol.111
, pp. 377-388
-
-
Harshman, J.1
-
19
-
-
77956890234
-
Monte Carlo sampling methods using Markov chains and their applications
-
Hastings, W.K., 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57, 97-109.
-
(1970)
Biometrika
, vol.57
, pp. 97-109
-
-
Hastings, W.K.1
-
20
-
-
0032023889
-
Taxonomic sampling, phylogenetic accuracy, and investigator bias
-
Hillis, D.M., 1998. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst. Biol. 47, 3-8.
-
(1998)
Syst. Biol.
, vol.47
, pp. 3-8
-
-
Hillis, D.M.1
-
21
-
-
0031436890
-
Phylogeny estimation and hypothesis testing using maximum likelihood
-
Huelsenbeck, J.P., Crandall, K.A., 1997. Phylogeny estimation and hypothesis testing using maximum likelihood. Ann. Rev. Ecol. Syst. 28, 437-466.
-
(1997)
Ann. Rev. Ecol. Syst.
, vol.28
, pp. 437-466
-
-
Huelsenbeck, J.P.1
Crandall, K.A.2
-
22
-
-
0036806280
-
Potential applications and pitfalls of Bayesian inference in Phylogeny
-
Huelsenbeck, J.P., Larget, B., Miller, R.E., Ronquist, F., 2002. Potential applications and pitfalls of Bayesian inference in Phylogeny. Syst. Biol. 51, 673-688.
-
(2002)
Syst. Biol.
, vol.51
, pp. 673-688
-
-
Huelsenbeck, J.P.1
Larget, B.2
Miller, R.E.3
Ronquist, F.4
-
23
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J.P., Ronquist, F., 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
24
-
-
0033936592
-
Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes)
-
Johnson, K.P., Clayton, D.H., 2000. Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes). Mol. Phylogenet. Evol. 14, 141-151.
-
(2000)
Mol. Phylogenet. Evol.
, vol.14
, pp. 141-151
-
-
Johnson, K.P.1
Clayton, D.H.2
-
25
-
-
0024382879
-
Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers
-
Kocher, T.D., Thomas, W.K., Meyer, A., Edwards, S.V., Paabo, S., Villablanca, F.X., Wilson, A.C., 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA 86, 6196-6200.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6196-6200
-
-
Kocher, T.D.1
Thomas, W.K.2
Meyer, A.3
Edwards, S.V.4
Paabo, S.5
Villablanca, F.X.6
Wilson, A.C.7
-
26
-
-
0001250689
-
The stochastic mode of molecular evolution: What consequences for systematic investigations
-
Lanyon, S.M., 1988. The stochastic mode of molecular evolution: what consequences for systematic investigations. Auk 105, 565-573.
-
(1988)
Auk
, vol.105
, pp. 565-573
-
-
Lanyon, S.M.1
-
27
-
-
0027975918
-
Reexamination of barbet monophyly using mitochondrial-DNA sequence data
-
Lanyon, S.M., Hall, J.G., 1994. Reexamination of barbet monophyly using mitochondrial-DNA sequence data. Auk 111, 389-397.
-
(1994)
Auk
, vol.111
, pp. 389-397
-
-
Lanyon, S.M.1
Hall, J.G.2
-
28
-
-
0004209471
-
Genetic variation in piciform birds: Monophyly and generic and familial relationships
-
Lanyon, S.M., Zink, R.M., 1987. Genetic variation in piciform birds: monophyly and generic and familial relationships. Auk 104, 724-732.
-
(1987)
Auk
, vol.104
, pp. 724-732
-
-
Lanyon, S.M.1
Zink, R.M.2
-
29
-
-
0036005516
-
Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): A comparison of parsimony, likelihood, and Bayesian approaches
-
Leaché, A.D., Reeder, T.W., 2002. Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Syst. Biol. 51, 44-68.
-
(2002)
Syst. Biol.
, vol.51
, pp. 44-68
-
-
Leaché, A.D.1
Reeder, T.W.2
-
30
-
-
0027662420
-
Species sampling has a major impact on phylogenetic inference
-
Lecointre, G.H., Philippe, H.L., Le, V., le Guyader, H., 1993. Species sampling has a major impact on phylogenetic inference. Mol. Phylogenet. Evol. 2, 205-224.
-
(1993)
Mol. Phylogenet. Evol.
, vol.2
, pp. 205-224
-
-
Lecointre, G.H.1
Philippe, H.L.2
Le, V.3
Le Guyader, H.4
-
31
-
-
5744249209
-
Equations of state calculations by fast computing machines
-
Metropolis, N., Rosenbluth, A.W., Rosenbluth, M.N., Teller, A.H., Teller, E., 1953. Equations of state calculations by fast computing machines. J. Chem. Phys. 21, 1087-1091.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1091
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
32
-
-
0028156627
-
Shortcomings of the cytochrome b gene as a molecular marker
-
Meyer, A., 1994. Shortcomings of the cytochrome b gene as a molecular marker. Trends Ecol. Evol. 9, 278-280.
-
(1994)
Trends Ecol. Evol.
, vol.9
, pp. 278-280
-
-
Meyer, A.1
-
33
-
-
0002821051
-
The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b
-
Mindell, D.P. (Ed.), Academic Press, San Diego
-
Moore, W.S., DeFilippis, V.R., 1997. The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b. In: Mindell, D.P. (Ed.), Avian Molecular Evolution and Systematics. Academic Press, San Diego, pp. 84-120.
-
(1997)
Avian Molecular Evolution and Systematics
, pp. 84-120
-
-
Moore, W.S.1
DeFilippis, V.R.2
-
34
-
-
0000614810
-
Evidence for a polyphyletic origin of the Piciformes
-
Olson, S.L., 1983. Evidence for a polyphyletic origin of the Piciformes. Auk 100, 126-133.
-
(1983)
Auk
, vol.100
, pp. 126-133
-
-
Olson, S.L.1
-
35
-
-
0033161714
-
A molecular phylogeny of the New World orioles (Icterus): The importance of dense taxon sampling
-
Omland, K.E., Lanyon, S.M., Fritz, S.J., 1999. A molecular phylogeny of the New World orioles (Icterus): the importance of dense taxon sampling. Mol. Phylogenet. Evol. 12, 224-239.
-
(1999)
Mol. Phylogenet. Evol.
, vol.12
, pp. 224-239
-
-
Omland, K.E.1
Lanyon, S.M.2
Fritz, S.J.3
-
36
-
-
0032023887
-
Sensitivity of phylogeny estimation to taxonomic sampling
-
Poe, S., 1998. Sensitivity of phylogeny estimation to taxonomic sampling. Syst. Biol. 47, 18-31.
-
(1998)
Syst. Biol.
, vol.47
, pp. 18-31
-
-
Poe, S.1
-
37
-
-
0036699885
-
Increased taxon sampling is advantageous for phylogenetic inference
-
Pollock, D.D., Zwickl, D.J., McGuire, J.A., Hillis, D.M., 2002. Increased taxon sampling is advantageous for phylogenetic inference. Syst. Biol. 51, 664-671.
-
(2002)
Syst. Biol.
, vol.51
, pp. 664-671
-
-
Pollock, D.D.1
Zwickl, D.J.2
McGuire, J.A.3
Hillis, D.M.4
-
38
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada, D., Crandall, K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
39
-
-
38249031182
-
Phylogenetic interrelationships of the barbets (Aves: Capitonidae) and toucans (Aves: Ramphastidae) based on morphology with comparisons to DNA-DNA hybridization
-
Prum, R.O., 1988. Phylogenetic interrelationships of the barbets (Aves: Capitonidae) and toucans (Aves: Ramphastidae) based on morphology with comparisons to DNA-DNA hybridization. Zool. J. Linn. Soc. 92, 313-343.
-
(1988)
Zool. J. Linn. Soc.
, vol.92
, pp. 313-343
-
-
Prum, R.O.1
-
40
-
-
0031255043
-
The utility of DNA sequences of an intron from the beta-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae)
-
Prychitko, T.M., Moore, W.S., 1997. The utility of DNA sequences of an intron from the beta-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae). Mol. Phylogenet. Evol. 8, 193-204.
-
(1997)
Mol. Phylogenet. Evol.
, vol.8
, pp. 193-204
-
-
Prychitko, T.M.1
Moore, W.S.2
-
41
-
-
0033934006
-
Comparative evolution of the mitochondrial Cytochrome b gene and nuclear beta-fibrinogen intron 7 in woodpeckers
-
Prychitko, T.M., Moore, W.S., 2000. Comparative evolution of the mitochondrial Cytochrome b gene and nuclear beta-fibrinogen intron 7 in woodpeckers. Mol. Biol. Evol. 17, 1101-1111.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1101-1111
-
-
Prychitko, T.M.1
Moore, W.S.2
-
42
-
-
0000193848
-
The diets of Neotropical trogons, motmots, barbets and toucans
-
Remsen, J.V., Hyde, M.A., Chapman, A., 1993. The diets of Neotropical trogons, motmots, barbets and toucans. Condor 95, 178-192.
-
(1993)
Condor
, vol.95
, pp. 178-192
-
-
Remsen, J.V.1
Hyde, M.A.2
Chapman, A.3
-
43
-
-
0347373835
-
The barbets
-
Ripley, S.D., 1945. The barbets. Auk 62, 542-563.
-
(1945)
Auk
, vol.62
, pp. 542-563
-
-
Ripley, S.D.1
-
44
-
-
0035845536
-
Incomplete taxon sampling is not a problem for phylogenetic inference
-
Rosenberg, M.S., Kumar, S., 2001. Incomplete taxon sampling is not a problem for phylogenetic inference. Proc. Nat. Acad. Sci. USA 98, 10751-10756.
-
(2001)
Proc. Nat. Acad. Sci. USA
, vol.98
, pp. 10751-10756
-
-
Rosenberg, M.S.1
Kumar, S.2
-
45
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira, H., Hasegawa, M., 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
46
-
-
0012397019
-
-
Oxford University Press, New York
-
Short, L.L., Horne, J.F.M., 2001. Toucans, Barbets, and Honeyguides: Capitonidae, Ramphastidae, and Indicatoridae. Oxford University Press, New York.
-
(2001)
Toucans, Barbets, and Honeyguides: Capitonidae, Ramphastidae, and Indicatoridae
-
-
Short, L.L.1
Horne, J.F.M.2
-
47
-
-
0003705026
-
-
Yale University, New Haven, CT
-
Sibley, C.G., Ahlquist, J.E., 1990. Phylogeny and classification of birds. Yale University, New Haven, CT.
-
(1990)
Phylogeny and Classification of Birds
-
-
Sibley, C.G.1
Ahlquist, J.E.2
-
49
-
-
0000251065
-
The phylogenetic relationships of the Piciformes (Class Aves)
-
Simpson, S.F., Cracraft, J., 1981. The phylogenetic relationships of the Piciformes (Class Aves). Auk 98, 481-494.
-
(1981)
Auk
, vol.98
, pp. 481-494
-
-
Simpson, S.F.1
Cracraft, J.2
-
50
-
-
0002618746
-
Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics
-
Sullivan, J., Swofford, D.L., 1997. Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics. J. Mammal Evol. 4 (2), 77-86.
-
(1997)
J. Mammal Evol.
, vol.4
, Issue.2
, pp. 77-86
-
-
Sullivan, J.1
Swofford, D.L.2
-
51
-
-
0000983048
-
Hind limb morphology, phylogeny, classification of the Piciformes
-
Swierczewski, E.V., Raikow, R.J., 1981. Hind limb morphology, phylogeny, classification of the Piciformes. Auk 98, 466-480.
-
(1981)
Auk
, vol.98
, pp. 466-480
-
-
Swierczewski, E.V.1
Raikow, R.J.2
-
53
-
-
0036368188
-
Phylogeny of the tree swallow genus, Tachycineta (Aves: Hirundinidae), by Bayesian analysis of mitochondrial DNA sequences
-
Whittingham, L.A., Slikas, B., Winkler, D.W., Sheldon, F.H., 2002. Phylogeny of the tree swallow genus, Tachycineta (Aves: Hirundinidae), by Bayesian analysis of mitochondrial DNA sequences. Mol. Phylogenet. Evol. 22, 430-441.
-
(2002)
Mol. Phylogenet. Evol.
, vol.22
, pp. 430-441
-
-
Whittingham, L.A.1
Slikas, B.2
Winkler, D.W.3
Sheldon, F.H.4
-
54
-
-
0036431235
-
Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
-
Wilcox, T.P., Zwickl, D.J., Heath, T.A., Hillis, D.M., 2002. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Mol. Phylogenet. Evol. 25, 361-371.
-
(2002)
Mol. Phylogenet. Evol.
, vol.25
, pp. 361-371
-
-
Wilcox, T.P.1
Zwickl, D.J.2
Heath, T.A.3
Hillis, D.M.4
-
55
-
-
0027132974
-
Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang, Z.H., 1993. Maximum likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10, 1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.H.1
-
56
-
-
0032028624
-
On the best evolutionary rate for phylogenetic analysis
-
Yang, Z.H., 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47, 125-133.
-
(1998)
Syst. Biol.
, vol.47
, pp. 125-133
-
-
Yang, Z.H.1
-
57
-
-
0036699481
-
Increased taxon sampling greatly reduces phylogenetic error
-
Zwickl, D.J., Hillis, D.M., 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51, 588-598.
-
(2002)
Syst. Biol.
, vol.51
, pp. 588-598
-
-
Zwickl, D.J.1
Hillis, D.M.2
|