Analysis of the amino acid effect on protein folding by atom pair contacts

Polymer

Volumn 45, Issue 2, 2004, Pages 609-621

  Jiang, Zhouting ^a   Zhang, Linxi ^a   Chen, Jin ^a   Xia, Agen ^a   Zhao, Delu ^b  

^a ZHEJIANG UNIVERSITY   (China)

^b INSTITUTE OF CHEMISTRY   (China)

Author keywords

Atom pair contact; Contact order and total contact distance; Folding rate of protein

Indexed keywords

AMINO ACIDS; HYDROPHILICITY; HYDROPHOBICITY; POLYMERS;

PROTEIN FOLDING; TOTAL CONTACT DISTANCE (TCD);

PROTEINS;

AMINO ACID; LEUCINE; PHENYLALANINE;

AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; ARTICLE; ATOMIC PARTICLE; CALCULATION; COMPARATIVE STUDY; CORRELATION ANALYSIS; HYDROPHILICITY; HYDROPHOBICITY; LINEAR REGRESSION ANALYSIS; MOLECULAR INTERACTION; PROTEIN FOLDING; PROTEIN STRUCTURE; RATING SCALE;

PROTEIN;

EID: 0346492920     PISSN: 00323861     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.polymer.2003.10.067     Document Type: Article

References (27)

1. Chan HS, Dill KA. Macromolecules 1989;22:4559-73.
2. Anfinsen CB, Haber E, Sela M, White FH. Proc Natl Acad Sci USA 1961;47:1309-14.
3. Anfinsen CB. Science 1973;181:223-30.
4. Plaxco KW, Simons KT, Baker D. J Mol Biol 1998;277:985-94.
5. Zhou HY, Zhou YQ. Biophys J 2002;82:458-63.
6. Debe DA, Goddard WA. J Mol Biol 1999;294:619-25.
7. Dinner AR, Karplus M. Nat Struct Biol 2001;8:21-2.
8. Zhang LX, Li J, Jiang ZT, Zhao DL. Polymer 2003;44:1751-6.
9. Miller EJ, Fischer KF, Marqusee S. Proc Natl Acad Sci USA 2002;99: 10359-63.
10. Vladimir S, Anatoli S, Jaime P, Enrique EA, Marvin E. Bioinformatics 1999;15:327-32.
11. McDonald IK, Thornton JM. J Mol Biol 1994;238:777-93.
12. Miyazawa S, Jernigan RL. Protein Engng 1993;6:267-78.
13. Russell RB, Barton GJ. J Mol Biol 1994;244:332-50.
14. Levitt M. J Mol Biol 1976;104:59-107.
15. Sippl MJ. Biophys Mol Biol Suppl 1996;65:3-10.
16. Jiang ZT, Zhang LX, Chen J, Xia AG, Zhao DL. Polymer 2002;43: 6037-47.
17. Hubbard TJP, Ailey B, Brenner SE, Murzin AG, Chothia C. Nucl Acids Res 1999;272:254-6.
18. Miyazawa S, Jernigan RL. Proteins 1999;34:49-68.
19. Miyazawa S, Jernigan RL. Proteins 2003;38:35-43.
20. Kumarevel TS, Gromiha MM, Ponnuswamy MN. Biophys Chem 1998;75:105-13.
21. Kumarevel TS, Gromiha MM, Selvaraj S, Gayatri K, Kumar PKR. Biophys Chem 2002;99:189-98.
22. Gromiha MM. Biophys Chem 2001;91:71-7.
23. Gromiha MM, Selvaraj S. Int J Biol Macromol 2001;29:25-34.
24. Miyazawa S, Jernigan RL. J Mol Biol 1996;256:623-44.
25. Manavalan P, Ponnuswamy PK. Nature 1987;275:673-4.
26. Chen J, Zhang LX, Li J, Wang YX, Jiang ZT, Zhao DL. Biophys Chem 2003;105:11-22.
27. Fauchere JL, Pliska V. Eur J Med Chem 1983;18:369-75.