SCOP: A structural classification of proteins database

Nucleic Acids Research

Volumn 27, Issue 1, 1999, Pages 254-256

  Hubbard, Tim J P ^a   Ailey, Bart ^b   Brenner, Steven E ^d   Murzin, Alexey G ^b   Chothia, Cyrus ^c  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b Cambridge Ctr for Protein Eng   (United Kingdom)

^c MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

^d STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ALGORITHM; DATA BASE; EVOLUTION; INTERNET; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN STRUCTURE; SHORT SURVEY;

ALGORITHMS; DATABASES, FACTUAL; EVOLUTION, MOLECULAR; INFORMATION STORAGE AND RETRIEVAL; INTERNET; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; STATISTICS;

EID: 0032940544     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.1.254     Document Type: Short Survey

References (25)

1. Abola, E., Bernstein, F.C., Bryant, S.H., Koetzle, T.F. and Weng, J. (1987) In Allen, F.H., Bergerhoff, G. and Sievers, R. (eds), Crystallographic Databases: Information Content, Software Systems, Scientific Applications. Data Commission of the International Union of Crystallography, Bonn/Cambridge/Chester, pp. 107-132.
2. Murzin, A., Brenner, S.E., Hubbard, T.J.P. and Chothia, C. (1995) J. Mol. Biol., 247, 536-540.
3. Brenner, S.E., Chothia, C., Hubbard, T.J.P. and Murzin, A. (1995) In Doolittle, R.F. (ed.), Computer Methods for Macromolecular Sequence Analysis. Academic Press, Orlando, FL.
4. Hubbard, T.J.P., Ailey, B., Brenner, S.E., Murzin, A. and Chothia, C., Acta Crystalog., in press.
5. Orengo, C. (1994) Curr. Opin. Struct. Biol., 4, 429-440.
6. Murzin, A.G. (1994) Curr. Opin. Struc. Biol., 4, 441-449.
7. Orengo, C.A., Flores, T.P., Taylor, W.R. and Thornton, J.M. (1993) Protein Engng, 6, 485-500.
8. Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) Structure, 5, 1093-1108.
9. Holm, L. and Sander, C. (1994) Nucleic Acids Res., 22, 3600-3609.
10. Holm, L. and Sander, C. (1996) Science, 273, 595-602.
11. Hogue, C., Ohkawa, H. and Bryant, S.H. (1996) Trends Biochem. Sci., 21, 226-229.
12. Sowdhamini, R., Rufino, S.D. and Blundell, T.L. (1996) Folding Design, 1, 209-220.
13. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) J. Mol. Biol., 215, 403-410.
14. Pearson, W.R. (1996) Methods Enzymol., 266, 227-258.
15. Brenner, S.E., Chothia, C. and Hubbard, T.J.P. (1998) Proc. Natl Acad. Sci. USA, 95, 6073-6078.
16. Sander, C. and Schneider, R. (1991) Proteins, 9, 56-68.
17. Laskowski, R.A., Macarthur, M.W., Moss, D.S. and Thornton, J.M. (1993) J. Appl. Crystallog., 26, 283-291.
18. Altschul, S.F. and Gish, W. (1996) Methods Enzymol., 266, 460-480.
19. Eddy, S.R. (1996) Curr. Opin. Struct. Biol., 6, 361-365.
20. Krogh, A., Brown, M., Mian, I.S., Sjolander, K. and Haussler, D.J. (1994) J. Mol. Biol., 235, 1501-1531.
21. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J.H., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Nucleic Acids Res., 25, 3389-3402.
22. Park, J.H., Teichmann, S.A., Hubbard, T.J. and Chothia, C. (1997) J. Mol. Biol., 273, 349-354.
23. Park, J., Karplus, K., Barrett, C., Hughey, R., Haussler, D., Hubbard, T. and Chothia, C., J. Mol. Biol., in press.
24. Brenner, S.E., Chothia, C. and Hubbard, T.J.P. (1997) Curr. Opin. Struct. Biol., 7, 369-376.
25. Orengo, C.A., Jones, D.T. and Thornton, J.M. (1994) Nature, 372, 631-634.