메뉴 건너뛰기




Volumn 50, Issue 1, 2003, Pages 35-43

Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space

Author keywords

Empirical potentials; Inverse protein folding; Protein folding; Protein sequence design; Protein sequence structure compatibility

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CORRELATION ANALYSIS; ENERGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN STRUCTURE; STATISTICAL ANALYSIS;

EID: 0037233452     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10242     Document Type: Article
Times cited : (20)

References (25)
  • 1
    • 18844474199 scopus 로고
    • Relation of the secondary structure of globular proteins with their primary structure
    • Ptitsyn OB, Finkelstein AV. Relation of the secondary structure of globular proteins with their primary structure. Biofizika (Moscow) 1970;15:757-767.
    • (1970) Biofizika (Moscow) , vol.15 , pp. 757-767
    • Ptitsyn, O.B.1    Finkelstein, A.V.2
  • 2
    • 0020972782 scopus 로고
    • Theoretical studies of protein folding
    • Go N. Theoretical studies of protein folding. Annu Rev Biophys Bioeng 1983;12:183-210.
    • (1983) Annu Rev Biophys Bioeng , vol.12 , pp. 183-210
    • Go, N.1
  • 3
    • 0027185404 scopus 로고
    • A method to configure protein side-chains from the main-chain trace in homology modeling
    • Eisenmenger F, Argos P, Abagyan R. A method to configure protein side-chains from the main-chain trace in homology modeling. J Mol Biol 1993;231:849-860.
    • (1993) J Mol Biol , vol.231 , pp. 849-860
    • Eisenmenger, F.1    Argos, P.2    Abagyan, R.3
  • 4
    • 0028598623 scopus 로고
    • Determinants of protein side-chain packing
    • Tanimura R, Kidera A, Nakamura H. Determinants of protein side-chain packing. Prot Sci 1994;3:2358-2365.
    • (1994) Prot Sci , vol.3 , pp. 2358-2365
    • Tanimura, R.1    Kidera, A.2    Nakamura, H.3
  • 5
    • 0023449962 scopus 로고
    • Spin glasses and the statistical mechanics of protein folding
    • Bryngelson JD, Wolynes PG. Spin glasses and the statistical mechanics of protein folding. Proc Natl Acad Sci USA 1987;84: 7524-7528.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 7524-7528
    • Bryngelson, J.D.1    Wolynes, P.G.2
  • 6
    • 0028947257 scopus 로고
    • Funnels, pathways and the energy landscape of protein folding: A synthesis
    • Bryngelson JD, Onuchic JN, Socci ND, Wolynes PG. Funnels, pathways and the energy landscape of protein folding: a synthesis. Proteins 1995;21:167-195.
    • (1995) Proteins , vol.21 , pp. 167-195
    • Bryngelson, J.D.1    Onuchic, J.N.2    Socci, N.D.3    Wolynes, P.G.4
  • 7
    • 0031565728 scopus 로고    scopus 로고
    • The foldon universe: A survey of structural similarity and self-recognition of independently folding units
    • Panchenko AR, Luthey-Schulten Z, Cole R, Wolynes PG. The foldon universe: a survey of structural similarity and self-recognition of independently folding units. J Mol Biol 1997;272:95-105.
    • (1997) J Mol Biol , vol.272 , pp. 95-105
    • Panchenko, A.R.1    Luthey-Schulten, Z.2    Cole, R.3    Wolynes, P.G.4
  • 9
    • 33845377127 scopus 로고
    • Estimation of effective interresidue contact energies from protein crystal structures: Quasi-chemical approximation
    • Miyazawa S, Jernigan RL. Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation. Macromolecules 1985;18:534-552.
    • (1985) Macromolecules , vol.18 , pp. 534-552
    • Miyazawa, S.1    Jernigan, R.L.2
  • 10
    • 0029919190 scopus 로고    scopus 로고
    • Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term for simulation and threading
    • Miyazawa S, Jernigan RL. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term for simulation and threading. J Mol Biol 1996;256: 623-644.
    • (1996) J Mol Biol , vol.256 , pp. 623-644
    • Miyazawa, S.1    Jernigan, R.L.2
  • 11
    • 0032960853 scopus 로고    scopus 로고
    • Self-consistent estimation of interresidue protein contact energies based on an equilibrium mixture approximation of residues
    • Miyazawa S, Jernigan RL. Self-consistent estimation of interresidue protein contact energies based on an equilibrium mixture approximation of residues. Proteins 1999;34:49-68.
    • (1999) Proteins , vol.34 , pp. 49-68
    • Miyazawa, S.1    Jernigan, R.L.2
  • 12
    • 0033566967 scopus 로고    scopus 로고
    • Evaluation of short-range interactions as secondary structure energies for protein fold and sequence recognition
    • Miyazawa S, Jernigan RL. Evaluation of short-range interactions as secondary structure energies for protein fold and sequence recognition. Proteins 1999;36:347-356.
    • (1999) Proteins , vol.36 , pp. 347-356
    • Miyazawa, S.1    Jernigan, R.L.2
  • 13
    • 0028801308 scopus 로고
    • Why do protein architectures have Boltzmann-like statistics?
    • Finkelstein AV, Badretdinov AY, Gutin AM. Why do protein architectures have Boltzmann-like statistics? Proteins 1995;23: 142-150.
    • (1995) Proteins , vol.23 , pp. 142-150
    • Finkelstein, A.V.1    Badretdinov, A.Y.2    Gutin, A.M.3
  • 14
    • 0030334626 scopus 로고    scopus 로고
    • Universality and diversity of the protein folding scenarios: A comprehensive analysis with the aid of lattice model
    • Mirny L, Abkevich V, Shakhnovich EI. Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of lattice model. Folding Design 1996;1:103-116.
    • (1996) Folding Design , vol.1 , pp. 103-116
    • Mirny, L.1    Abkevich, V.2    Shakhnovich, E.I.3
  • 16
    • 4243719017 scopus 로고    scopus 로고
    • New algorithm for protein design
    • Deutsch JM, Kurosky T. New algorithm for protein design. Phys Rev Lett 1996;76:323-326.
    • (1996) Phys Rev Lett , vol.76 , pp. 323-326
    • Deutsch, J.M.1    Kurosky, T.2
  • 17
    • 0030322731 scopus 로고    scopus 로고
    • Design of proteins with selected thermal properties
    • Morrissey M, Shakhnovich EI. Design of proteins with selected thermal properties. Folding Design 1996;1:391-406.
    • (1996) Folding Design , vol.1 , pp. 391-406
    • Morrissey, M.1    Shakhnovich, E.I.2
  • 18
    • 0030735693 scopus 로고    scopus 로고
    • Statistical mechanics of simple models of protein folding and design
    • Pande VS, Grosberg AY, Tanaka T. Statistical mechanics of simple models of protein folding and design. Biophys J 1997;73: 3192-3210.
    • (1997) Biophys J , vol.73 , pp. 3192-3210
    • Pande, V.S.1    Grosberg, A.Y.2    Tanaka, T.3
  • 19
    • 0031745665 scopus 로고    scopus 로고
    • Protein design: A perspective from simple tractable models
    • Shakhnovich EI. Protein design: a perspective from simple tractable models. Folding Design 1998;3:R45-R58.
    • (1998) Folding Design , vol.3
    • Shakhnovich, E.I.1
  • 20
    • 0033566614 scopus 로고    scopus 로고
    • An empirical energy potential with a reference state for protein fold and sequence recognition
    • Miyazawa S, Jernigan RL. An empirical energy potential with a reference state for protein fold and sequence recognition. Proteins 1999;36:357-369.
    • (1999) Proteins , vol.36 , pp. 357-369
    • Miyazawa, S.1    Jernigan, R.L.2
  • 21
    • 0033867374 scopus 로고    scopus 로고
    • Identifying sequence-structure pairs undetected by sequence alignments
    • Miyazawa S, Jernigan RL. Identifying sequence-structure pairs undetected by sequence alignments. Prot Eng 2000;13:459-475.
    • (2000) Prot Eng , vol.13 , pp. 459-475
    • Miyazawa, S.1    Jernigan, R.L.2
  • 22
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995;247:536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 23
    • 0027438090 scopus 로고
    • A new approach to the design of stable proteins
    • Shakhnovich EI, Gutin AM. A new approach to the design of stable proteins. Prot Eng 1993;6:793-800.
    • (1993) Prot Eng , vol.6 , pp. 793-800
    • Shakhnovich, E.I.1    Gutin, A.M.2
  • 24
    • 0027234766 scopus 로고
    • Engineering of stable and fast-folding sequences of model proteins
    • Shakhnovich EI, Gutin AM. Engineering of stable and fast-folding sequences of model proteins. Proc Natl Acad Sci USA 1993;90: 7195-7199.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 7195-7199
    • Shakhnovich, E.I.1    Gutin, A.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.