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Volumn 31, Issue 18, 2003, Pages 5221-5228

DNA supercoiling enables the Type IIS restriction enzyme BspMI to recognise the relative orientation of two DNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; PLASMID DNA; RESTRICTION ENDONUCLEASE;

EID: 0344875225     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg743     Document Type: Article
Times cited : (14)

References (38)
  • 1
    • 0023121009 scopus 로고
    • Communication between segments of DNA during site-specific recombination
    • Gellert, M. and Nash, H. (1987) Communication between segments of DNA during site-specific recombination. Nature, 325, 401-404.
    • (1987) Nature , vol.325 , pp. 401-404
    • Gellert, M.1    Nash, H.2
  • 2
    • 0025148348 scopus 로고
    • Nucleoprotein structures initiating DNA replication, transcription and site-specific recombination
    • Echols, H. (1990) Nucleoprotein structures initiating DNA replication, transcription and site-specific recombination. J. Biol. Chem., 265, 14697-14700.
    • (1990) J. Biol. Chem. , vol.265 , pp. 14697-14700
    • Echols, H.1
  • 5
    • 0035883536 scopus 로고    scopus 로고
    • Nucleoside triphosphate-dependent restriction enzymes
    • Dryden, D.T.F., Murray, N.E. and Rao, D.N. (2001) Nucleoside triphosphate-dependent restriction enzymes. Nucleic Acids Res., 29, 3728-3741.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3728-3741
    • Dryden, D.T.F.1    Murray, N.E.2    Rao, D.N.3
  • 6
    • 0034877122 scopus 로고    scopus 로고
    • Hopping, jumping and looping by restriction enzymes
    • Halford, S.E. (2001) Hopping, jumping and looping by restriction enzymes. Biochem. Soc. Trans, 29, 363-373.
    • (2001) Biochem. Soc. Trans. , vol.29 , pp. 363-373
    • Halford, S.E.1
  • 7
    • 0028801067 scopus 로고
    • Action at a distance: DNA-looping and initiation of transcription
    • Rippe, K., von Hippel, P.H. and Langowski, J. (1995) Action at a distance: DNA-looping and initiation of transcription. Trends Biochem. Sci., 20, 500-506.
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 500-506
    • Rippe, K.1    von Hippel, P.H.2    Langowski, J.3
  • 8
    • 0037041395 scopus 로고    scopus 로고
    • An extensive network of coupling among gene expression machines
    • Maniatis, T. and Reed, R. (2002) An extensive network of coupling among gene expression machines. Nature, 416, 499-506.
    • (2002) Nature , vol.416 , pp. 499-506
    • Maniatis, T.1    Reed, R.2
  • 9
    • 0030721538 scopus 로고    scopus 로고
    • Transposition and site-specific recombination: Adapting DNA cut-and-paste mechanisms to a variety of DNA rearrangements
    • Hallet, B. and Sherratt, D.J. (1997) Transposition and site-specific recombination: adapting DNA cut-and-paste mechanisms to a variety of DNA rearrangements. FEMS Microbiol. Rev., 21, 157-178.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 157-178
    • Hallet, B.1    Sherratt, D.J.2
  • 10
    • 0001037223 scopus 로고
    • Topological selectivity in site-specific recombination
    • Sherratt, D.J. (ed.), Oxford University Press, Oxford, UK
    • Stark, W.M. and Boocock, M.A. (1995) Topological selectivity in site-specific recombination. In Sherratt, D.J. (ed.), Mobile Genetic Elements. Oxford University Press, Oxford, UK, pp. 101-129.
    • (1995) Mobile Genetic Elements , pp. 101-129
    • Stark, W.M.1    Boocock, M.A.2
  • 11
    • 0026584744 scopus 로고
    • Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage
    • Meisel, A., Bickle, T.A., Krüger, D.H. and Schroeder, C. (1992) Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage. Nature, 355, 467-469.
    • (1992) Nature , vol.355 , pp. 467-469
    • Meisel, A.1    Bickle, T.A.2    Krüger, D.H.3    Schroeder, C.4
  • 12
    • 0029045067 scopus 로고
    • Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
    • Meisel, A., Mackeldanz, P., Bickle, T.A., Krüger, D.H. and Schroeder, C. (1995) Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis. EMBO J., 14, 2958-2966.
    • (1995) EMBO J. , vol.14 , pp. 2958-2966
    • Meisel, A.1    Mackeldanz, P.2    Bickle, T.A.3    Krüger, D.H.4    Schroeder, C.5
  • 13
    • 0001731921 scopus 로고
    • Roles of supercoiled DNA structure in DNA transactions
    • Kanaar, R. and Cozzarelli, N.R. (1992) Roles of supercoiled DNA structure in DNA transactions. Curr. Opin. Struct. Biol., 2, 369-379.
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 369-379
    • Kanaar, R.1    Cozzarelli, N.R.2
  • 14
    • 0024195388 scopus 로고
    • Isolation and characterization of unusual gin mutants
    • Klippel, A., Cloppenborg, K. and Kahmann, R. (1988) Isolation and characterization of unusual gin mutants. EMBO J., 7, 3983-3989.
    • (1988) EMBO J. , vol.7 , pp. 3983-3989
    • Klippel, A.1    Cloppenborg, K.2    Kahmann, R.3
  • 15
    • 0033105367 scopus 로고    scopus 로고
    • Mutants of Tn3 resolvase which do not require accessory binding sites for recombination activity
    • Arnold, P.H., Blake, D.G., Grindley, N.D.F., Boocock, M.R. and Stark, W.M. (1999) Mutants of Tn3 resolvase which do not require accessory binding sites for recombination activity. EMBO J., 18, 1407-1414.
    • (1999) EMBO J. , vol.18 , pp. 1407-1414
    • Arnold, P.H.1    Blake, D.G.2    Grindley, N.D.F.3    Boocock, M.R.4    Stark, W.M.5
  • 18
    • 0034815621 scopus 로고    scopus 로고
    • Intrachain reactions of supercoiled DNA simulated by Brownian dynamics
    • Klenin, K.V. and Langowski, J. (2001) Intrachain reactions of supercoiled DNA simulated by Brownian dynamics. Biophys. J., 81, 1924-1929.
    • (2001) Biophys. J. , vol.81 , pp. 1924-1929
    • Klenin, K.V.1    Langowski, J.2
  • 19
    • 0024582917 scopus 로고
    • Interaction of proteins located at a distance along DNA: Mechanisms of target immunity in the Mu DNA strand-transfer reaction
    • Adzuma, K. and Mizuuchi, K. (1989) Interaction of proteins located at a distance along DNA: mechanisms of target immunity in the Mu DNA strand-transfer reaction. Cell, 57, 41-47.
    • (1989) Cell , vol.57 , pp. 41-47
    • Adzuma, K.1    Mizuuchi, K.2
  • 20
    • 0030058275 scopus 로고    scopus 로고
    • Effects of supercoiling on the juxtapostition and relative orientation of two DNA sites
    • Vologodskii, A. and Cozzarelli, N.R. (1996) Effects of supercoiling on the juxtapostition and relative orientation of two DNA sites. Biophys. J., 70, 2548-2556.
    • (1996) Biophys. J. , vol.70 , pp. 2548-2556
    • Vologodskii, A.1    Cozzarelli, N.R.2
  • 22
    • 0025797325 scopus 로고
    • Class-IIS restriction enzymes - A review
    • Szybalski, W., Kim, S.C., Hasan, N. and Podhajska, A.J. (1991) Class-IIS restriction enzymes - a review. Gene, 100, 13-26.
    • (1991) Gene , vol.100 , pp. 13-26
    • Szybalski, W.1    Kim, S.C.2    Hasan, N.3    Podhajska, A.J.4
  • 23
    • 0035946911 scopus 로고    scopus 로고
    • FokI requires two specific DNA sites for cleavage
    • Vanamee, E.S., Santaga, S. and Aggarwal, A.K. (2001) FokI requires two specific DNA sites for cleavage. J. Mol. Biol., 309, 69-78.
    • (2001) J. Mol. Biol. , vol.309 , pp. 69-78
    • Vanamee, E.S.1    Santaga, S.2    Aggarwal, A.K.3
  • 24
    • 0037040271 scopus 로고    scopus 로고
    • Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA
    • Bath, A.J., Milsom, S.E., Gormley, N.A. and Halford, S.E. (2002) Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA. J. Biol. Chem., 277, 4024-4033.
    • (2002) J. Biol. Chem. , vol.277 , pp. 4024-4033
    • Bath, A.J.1    Milsom, S.E.2    Gormley, N.A.3    Halford, S.E.4
  • 26
    • 0037040190 scopus 로고    scopus 로고
    • The Type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence
    • Gormley, N.A., Hillberg, A.L. and Halford, S.E. (2002) The Type IIs restriction endonuclease BspMI is a tetramer that acts concertedly at two copies of an asymmetric DNA sequence. J. Biol. Chem., 277, 4034-4041.
    • (2002) J. Biol. Chem. , vol.277 , pp. 4034-4041
    • Gormley, N.A.1    Hillberg, A.L.2    Halford, S.E.3
  • 27
    • 0037470599 scopus 로고    scopus 로고
    • The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre
    • Lagunavicius, A., Sasnauskas, G., Halford, S.E. and Siksnys, V. (2003) The metal-independent type IIs restriction enzyme BfiI is a dimer that binds two DNA sites but has only one catalytic centre. J. Mol. Biol., 326, 1051-1064.
    • (2003) J. Mol. Biol. , vol.326 , pp. 1051-1064
    • Lagunavicius, A.1    Sasnauskas, G.2    Halford, S.E.3    Siksnys, V.4
  • 28
    • 0028988946 scopus 로고
    • The SfiI restriction endonuclease makes a 4-strand DNA break at two copies of its recognition sequence
    • Wentzell, L.M., Nobbs, T.J. and Halford, S.E. (1995) The SfiI restriction endonuclease makes a 4-strand DNA break at two copies of its recognition sequence. J. Mol. Biol., 248, 581-595.
    • (1995) J. Mol. Biol. , vol.248 , pp. 581-595
    • Wentzell, L.M.1    Nobbs, T.J.2    Halford, S.E.3
  • 29
    • 0033818703 scopus 로고    scopus 로고
    • Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
    • Deibert, M., Grazulis, S., Sasnauskas, G., Siksnys, V. and Huber, R. (2000) Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA. Nature Struct. Biol., 7, 792-799.
    • (2000) Nature Struct. Biol. , vol.7 , pp. 792-799
    • Deibert, M.1    Grazulis, S.2    Sasnauskas, G.3    Siksnys, V.4    Huber, R.5
  • 30
    • 0018831237 scopus 로고
    • Trans-complementable copy-number mutants of plasmid ColE1
    • Twigg, A.J. and Sherratt, D.J. (1980) Trans-complementable copy-number mutants of plasmid ColE1. Nature, 283, 216-218.
    • (1980) Nature , vol.283 , pp. 216-218
    • Twigg, A.J.1    Sherratt, D.J.2
  • 32
    • 0025825164 scopus 로고
    • Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial species
    • Oller, A.R., Vanden Broek, W., Conrad, M. and Topal, M.D. (1991) Ability of DNA and spermidine to affect the activity of restriction endonucleases from several bacterial species. Biochemistry, 30, 2543-2549.
    • (1991) Biochemistry , vol.30 , pp. 2543-2549
    • Oller, A.R.1    Vanden Broek, W.2    Conrad, M.3    Topal, M.D.4
  • 33
    • 0026569359 scopus 로고
    • The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex
    • Taylor, J.D. and Halford, S.E. (1992) The activity of the EcoRV restriction endonuclease is influenced by flanking DNA sequences both inside and outside the DNA-protein complex. Biochemistry, 31, 90-97.
    • (1992) Biochemistry , vol.31 , pp. 90-97
    • Taylor, J.D.1    Halford, S.E.2
  • 34
    • 0023732866 scopus 로고
    • Model for how type I restriction enzymes select cleavage sites in DNA
    • Studier, F.W. and Bandyopadhyay, P.K. (1988) Model for how type I restriction enzymes select cleavage sites in DNA. Proc. Natl Acad. Sci. USA, 85, 4677-4681.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 4677-4681
    • Studier, F.W.1    Bandyopadhyay, P.K.2
  • 35
    • 0034595208 scopus 로고    scopus 로고
    • Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement
    • Firman, K. and Szczelkun, M.D. (2000) Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement. EMBO J., 19, 2094-2102.
    • (2000) EMBO J. , vol.19 , pp. 2094-2102
    • Firman, K.1    Szczelkun, M.D.2
  • 36
    • 0029910629 scopus 로고    scopus 로고
    • Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates
    • Szczelkun, M.D., Dillingham, M.S., Janscak, P., Firman, K. and Halford, S.E. (1996) Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates. EMBO J., 15, 6335-6347.
    • (1996) EMBO J. , vol.15 , pp. 6335-6347
    • Szczelkun, M.D.1    Dillingham, M.S.2    Janscak, P.3    Firman, K.4    Halford, S.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.