Intrachain reactions of supercoiled DNA simulated by Brownian dynamics

Biophysical Journal

Volumn 81, Issue 4, 2001, Pages 1924-1929

  Klenin, Konstantin V ^a   Langowski, Jörg ^a  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; SODIUM CHLORIDE;

AQUEOUS SOLUTION; ARTICLE; CALCULATION; CONCENTRATION (PARAMETERS); DNA DETERMINATION; DNA SUPERCOILING; DYNAMICS; PROBABILITY; REACTION ANALYSIS; REACTION TIME;

EID: 0034815621     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(01)75843-2     Document Type: Article

References (19)

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6. Modeling dynamic light scattering of supercoiled DNA
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8. Kinetics of intrachain reactions of supercoiled DNA: Theory and numerical modeling
9. A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes
10. Statistical mechanics of supercoiled DNA
11. The internal "slithering" dynamics of supercoiled DNA
12. Simulations of polymer cyclization by Brownian dynamics
13. Action at a distance: DNA-looping and initiation of transcription
14. Variational treatment of hydrodynamic interaction in polymers
15. Random walk models for DNA synapsis by resolvase
16. Catalysis by site-specific recombinases
17. Interaction of highly charged colloidal cylinders with applications to double-stranded DNA
18. Effect of supercoiling on the juxtaposition and relative orientation of DNA sites
19. Conformational and thermodynamic properties of supercoiled DNA