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Volumn 371, Issue 1, 2003, Pages 143-150

Mutations of penicillin acylase residue B71 extend substrate specificity by decreasing steric constraints for substrate binding

Author keywords

Directed evolution; Enzyme kinetics; Three dimensional structure

Indexed keywords

CATALYST ACTIVITY; CRYSTAL STRUCTURE; ENTROPY; PROTEINS; SUBSTRATES;

EID: 0242286152     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/BJ20021383     Document Type: Article
Times cited : (17)

References (42)
  • 1
    • 0034730417 scopus 로고    scopus 로고
    • Structure of a slow processing precursor penicillin acylase from Escherichia coli reveals the linker peptide blocking the activesite cleft
    • Hewitt, L., Kasche, V., Lummer, K., Lewis, R. J., Murshudov, G. N., Verma, C. S., Dodson, G. G. and Wilson, K. S. (2000) Structure of a slow processing precursor penicillin acylase from Escherichia coli reveals the linker peptide blocking the activesite cleft. J. Mol. Biol. 302, 887-898
    • (2000) J. Mol. Biol. , vol.302 , pp. 887-898
    • Hewitt, L.1    Kasche, V.2    Lummer, K.3    Lewis, R.J.4    Murshudov, G.N.5    Verma, C.S.6    Dodson, G.G.7    Wilson, K.S.8
  • 2
    • 0035850792 scopus 로고    scopus 로고
    • Crystal structures of penicillin acylase enzyme-substrate complexes: Structural insights into the catalytic mechanism
    • McVey, C., Walsh, M. A., Dodson, G. G., Wilson, K. S. and Brannigan, J. A. (2001) Crystal structures of penicillin acylase enzyme-substrate complexes: structural insights into the catalytic mechanism. J. Mol. Biol. 313, 139-150
    • (2001) J. Mol. Biol. , vol.313 , pp. 139-150
    • McVey, C.1    Walsh, M.A.2    Dodson, G.G.3    Wilson, K.S.4    Brannigan, J.A.5
  • 4
    • 0032573516 scopus 로고    scopus 로고
    • Ligandinduced conformational change in penicillin acylase
    • Done, S. H., Brannigan, J. A., Moody, P. C. E. and Hubbard, R. E. (1998) Ligandinduced conformational change in penicillin acylase. J. Mol. Biol. 284, 463-475
    • (1998) J. Mol. Biol. , vol.284 , pp. 463-475
    • Done, S.H.1    Brannigan, J.A.2    Moody, P.C.E.3    Hubbard, R.E.4
  • 6
    • 0025790912 scopus 로고
    • Site-directed chemical conversion of serine to cysteine in penicillin acylase from Escherichia coli ATCC 11105: Effect on conformation and catalytic activity
    • Slade, A., Horrocks, A. J., Lindsay, C. D., Dunbar, B. and Virden, R. (1991) Site-directed chemical conversion of serine to cysteine in penicillin acylase from Escherichia coli ATCC 11105: effect on conformation and catalytic activity. Eur. J. Biochem. 197, 75-80
    • (1991) Eur. J. Biochem. , vol.197 , pp. 75-80
    • Slade, A.1    Horrocks, A.J.2    Lindsay, C.D.3    Dunbar, B.4    Virden, R.5
  • 7
    • 0026334245 scopus 로고
    • Chemical modification of serine at the active site of penicillin acylase from Kluyvera citrophila
    • Martin, J., Slade, A., Aitken, A., Arche, R. and Virden, R. (1991) Chemical modification of serine at the active site of penicillin acylase from Kluyvera citrophila. Biochem. J. 280, 659-662
    • (1991) Biochem. J. , vol.280 , pp. 659-662
    • Martín, J.1    Slade, A.2    Aitken, A.3    Arche, R.4    Virden, R.5
  • 9
    • 0030014982 scopus 로고    scopus 로고
    • Rapid burst kinetics in the hydrolysis of 4-nitrophenyl acetate by penicillin G acylase from Kluyvera citrophila
    • Roa, A., Goble, M. L., Garcia, J. L., Acebal, C. and Virden, R. (1996) Rapid burst kinetics in the hydrolysis of 4-nitrophenyl acetate by penicillin G acylase from Kluyvera citrophila. Biochem. J. 316, 409-412
    • (1996) Biochem. J. , vol.316 , pp. 409-412
    • Roa, A.1    Goble, M.L.2    Garcia, J.L.3    Acebal, C.4    Virden, R.5
  • 10
    • 0034462589 scopus 로고    scopus 로고
    • Characterization of the β-lactam binding site of penicillin acylase of Escherichia coli by structural and site-directed mutagenesis studies
    • Alkema, W. B. L., Hensgens, C. M. H., Kroezinga, E. H., de Vries, E., Floris, R., van der Laan, J. M., Dijkstra, B. W. and Janssen, D. B (2000) Characterization of the β-lactam binding site of penicillin acylase of Escherichia coli by structural and site-directed mutagenesis studies. Protein Eng. 13, 857-863
    • (2000) Protein Eng. , vol.13 , pp. 857-863
    • Alkema, W.B.L.1    Hensgens, C.M.H.2    Kroezinga, E.H.3    De Vries, E.4    Floris, R.5    Van Der Laan, J.M.6    Dijkstra, B.W.7    Janssen, D.B.8
  • 12
    • 0022362447 scopus 로고
    • Experimental evolution of penicillin G acylases from Escherichia coli and Proteus rettgeri
    • Daumy, G. O., Danley, D., McColl, A., Apostolakos, D. and Vinick, F. J. (1985) Experimental evolution of penicillin G acylases from Escherichia coli and Proteus rettgeri. J. Bacteriol. 163, 925-932
    • (1985) J. Bacteriol. , vol.163 , pp. 925-932
    • Daumy, G.O.1    Danley, D.2    McColl, A.3    Apostolakos, D.4    Vinick, F.J.5
  • 13
    • 0022592256 scopus 로고
    • An improved method to clone penicillin acylase genes: Cloning and expression in Escherichia coli of penicillin G acylase from Kluyvera citrophila
    • Garcia, J. L. and Buesa, J. M. (1986) An improved method to clone penicillin acylase genes: cloning and expression in Escherichia coli of penicillin G acylase from Kluyvera citrophila. J. Biotechnol. 3, 187-195
    • (1986) J. Biotechnol. , vol.3 , pp. 187-195
    • Garcia, J.L.1    Buesa, J.M.2
  • 14
    • 0024440475 scopus 로고
    • Selection of amidases with novel substrate specilicities from penicillin amidase of Escherichia coli
    • Forney, L. J., Wong, D. C. L. and Ferber, D. M. (1989) Selection of amidases with novel substrate specilicities from penicillin amidase of Escherichia coli. Appl. Environ. Microbiol. 55, 2550-2555
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 2550-2555
    • Forney, L.J.1    Wong, D.C.L.2    Ferber, D.M.3
  • 15
    • 0002544329 scopus 로고
    • Altered specificity mutants of penicillin acylase
    • Geisow, M. and Epton, R., eds. Mayflower Worldwide, Kingswinford
    • Brannigan, J., Ladurner, A., McVey, C. and Forney, L. (1995) Altered specificity mutants of penicillin acylase. In Perspectives on Protein Engineering (Geisow, M. and Epton, R., eds.), pp. 124-126, Mayflower Worldwide, Kingswinford
    • (1995) Perspectives on Protein Engineering , pp. 124-126
    • Brannigan, J.1    Ladurner, A.2    McVey, C.3    Forney, L.4
  • 16
    • 0021312893 scopus 로고
    • Amino acid analysis by reverse-phase high-performance liquid chromatography: Precolumn derivatization with phenylisothiocyanate
    • Heinrikson, R. L. and Meredith, S. C. (1984) Amino acid analysis by reverse-phase high-performance liquid chromatography: precolumn derivatization with phenylisothiocyanate. Anal. Biochem. 136, 65-74
    • (1984) Anal. Biochem. , vol.136 , pp. 65-74
    • Heinrikson, R.L.1    Meredith, S.C.2
  • 17
    • 0023697408 scopus 로고
    • Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants
    • Santoro, M. M. and Bolen, D. W. (1988) Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants. Biochemistry 27, 8063-8068
    • (1988) Biochemistry , vol.27 , pp. 8063-8068
    • Santoro, M.M.1    Bolen, D.W.2
  • 18
    • 0023044277 scopus 로고
    • Progress curves of reactions catalyzed by unstable enzymes. A theoretical approach
    • Duggleby, R. N. (1986) Progress curves of reactions catalyzed by unstable enzymes. A theoretical approach. J. Theor. Biol. 123, 67-80
    • (1986) J. Theor. Biol. , vol.123 , pp. 67-80
    • Duggleby, R.N.1
  • 19
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-325
    • (1997) Methods Enzymol. , vol.276 , pp. 307-325
    • Otwinowski, Z.1    Minor, W.2
  • 20
    • 0028103275 scopus 로고
    • The CCP4 Suite: Programs for protein crystallography
    • Collaborative Computational Proiect, no. 4 (1994) The CCP4 Suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763
    • (1994) Acta Crystallogr. D , vol.50 , pp. 760-763
  • 21
    • 84920325457 scopus 로고
    • AMoRe: An automated package for molecular replacement
    • Navaza, J. (1994) AMoRe: an automated package for molecular replacement. Acta Crystallogr. A 50, 157-163
    • (1994) Acta Crystallogr. A , vol.50 , pp. 157-163
    • Navaza, J.1
  • 22
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov, G. N., Vagin, A. A. and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53, 240-255
    • (1997) Acta Crystallogr. D , vol.53 , pp. 240-255
    • Murshudov, G.N.1    Vagin, A.A.2    Dodson, E.J.3
  • 23
    • 0000127585 scopus 로고
    • Automated refinement of protein models
    • Lamzin, V. S. and Wilson, K. S. (1993) Automated refinement of protein models. Acta Crystallogr. D 49, 129-147
    • (1993) Acta Crystallogr. D , vol.49 , pp. 129-147
    • Lamzin, V.S.1    Wilson, K.S.2
  • 24
    • 0026597444 scopus 로고
    • Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
    • Brünger, A. T. (1992) Free R value: A novel statistical quantity for assessing the accuracy of crystal structures. Nature (London) 355, 472-475
    • (1992) Nature (London) , vol.355 , pp. 472-475
    • Brünger, A.T.1
  • 25
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex, N. and Peitsch, M. C. (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18, 2714-2723
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 26
    • 0023481348 scopus 로고
    • Complete nucleotide sequence of the penicillin G acylase gene and the flanking regions, and its expression in Escherichia coli
    • Oh, S.-J., Kim, Y.-C., Park, Y.-W., Min, S.-Y., Kim, I.-S. and Kang, H.-S. (1987) Complete nucleotide sequence of the penicillin G acylase gene and the flanking regions, and its expression in Escherichia coli. Gene 56, 87-97
    • (1987) Gene , vol.56 , pp. 87-97
    • Oh, S.-J.1    Kim, Y.-C.2    Park, Y.-W.3    Min, S.-Y.4    Kim, I.-S.5    Kang, H.-S.6
  • 28
    • 0024425139 scopus 로고
    • Alteration of the catalytic efficiency of penicillin amidase from Escherichia coli
    • Forney, L. J. and Wong, D. C. L (1989) Alteration of the catalytic efficiency of penicillin amidase from Escherichia coli. Appl. Environ. Microbiol. 55, 2556-2560
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 2556-2560
    • Forney, L.J.1    Wong, D.C.L.2
  • 29
    • 0028172065 scopus 로고
    • Changing the substrate specificity of penicillin G acylase from Kluyvera citrophila through selective pressure
    • Roa, A., Garcia, J. L., Salto, F. and Cortes, E. (1994) Changing the substrate specificity of penicillin G acylase from Kluyvera citrophila through selective pressure. Biochem. J. 303, 869-875
    • (1994) Biochem. J. , vol.303 , pp. 869-875
    • Roa, A.1    Garcia, J.L.2    Salto, F.3    Cortes, E.4
  • 30
    • 0029091933 scopus 로고
    • Improvement of the catalytic properties of penicillin G acylase from Eschenchia coli ATCC 11105 by selection of a new substrate specificity
    • Niersbach, H., Kuhne, A., Tischer, W., Weber, M., Wedekind, F. and Plapp, R. (1995) Improvement of the catalytic properties of penicillin G acylase from Eschenchia coli ATCC 11105 by selection of a new substrate specificity. Appl. Microbiol. Biotechnol. 43, 679-684
    • (1995) Appl. Microbiol. Biotechnol. , vol.43 , pp. 679-684
    • Niersbach, H.1    Kuhne, A.2    Tischer, W.3    Weber, M.4    Wedekind, F.5    Plapp, R.6
  • 31
    • 0028923978 scopus 로고
    • Isolation and mapping of a mutant penicillin G acylase with altered substrate specificity from Escherichia coli
    • Niersbach, H., Tischer, W., Weber, M., Wedekind, F. and Plapp, R. (1995) Isolation and mapping of a mutant penicillin G acylase with altered substrate specificity from Escherichia coli. Biotechnol. Lett. 17, 19-24
    • (1995) Biotechnol. Lett. , vol.17 , pp. 19-24
    • Niersbach, H.1    Tischer, W.2    Weber, M.3    Wedekind, F.4    Plapp, R.5
  • 32
    • 0033593453 scopus 로고    scopus 로고
    • Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of non-active site residues
    • Oue, S., Okamoto, A., Yano, T. and Kagamiyama, H. (1999) Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of non-active site residues. J. Biol. Chem. 274, 2344-2349
    • (1999) J. Biol. Chem. , vol.274 , pp. 2344-2349
    • Oue, S.1    Okamoto, A.2    Yano, T.3    Kagamiyama, H.4
  • 33
    • 0025180221 scopus 로고
    • The folding and solution conformation of penicillin G acylase
    • Lindsay, C. D. and Pain, R. H. (1990) The folding and solution conformation of penicillin G acylase. Eur. J. Biochem. 192, 133-141
    • (1990) Eur. J. Biochem. , vol.192 , pp. 133-141
    • Lindsay, C.D.1    Pain, R.H.2
  • 34
    • 0034615775 scopus 로고    scopus 로고
    • Directed evolution study of temperature adaptation in a psychrophilic enzyme
    • Miyazaki, K., Wintrode, P. L., Grayling, R. A., Rubingh, D. N. and Arnold, F. H. (2000) Directed evolution study of temperature adaptation in a psychrophilic enzyme. J. Mol. Biol. 297, 1015-1026
    • (2000) J. Mol. Biol. , vol.297 , pp. 1015-1026
    • Miyazaki, K.1    Wintrode, P.L.2    Grayling, R.A.3    Rubingh, D.N.4    Arnold, F.H.5
  • 35
    • 0031901853 scopus 로고    scopus 로고
    • Mutation of cis-proline 207 in mitochondrial creatine kinase to alanine leads to increased acid stability
    • Forstner, M., Muller, A., Rognan, D., Kriechbaum, M. and Wallimann, T. (1998) Mutation of cis-proline 207 in mitochondrial creatine kinase to alanine leads to increased acid stability. Protein Eng. 11, 563-568
    • (1998) Protein Eng. , vol.11 , pp. 563-568
    • Forstner, M.1    Muller, A.2    Rognan, D.3    Kriechbaum, M.4    Wallimann, T.5
  • 36
    • 0030480257 scopus 로고    scopus 로고
    • An engineered penicillin acylase with altered surface charge is more stable in alkaline pH
    • Del Río, G., Lopez-Munguía, A. and Soberon, X. (1996) An engineered penicillin acylase with altered surface charge is more stable in alkaline pH. Ann. N.Y. Acad. Sci 799, 61-64
    • (1996) Ann. N.Y. Acad. Sci. , vol.799 , pp. 61-64
    • Del Río, G.1    Lopez-Munguía, A.2    Soberon, X.3
  • 38
    • 0025141842 scopus 로고
    • Thermodynamic profiles of penicillin G hydrolysis catalysed by wild-type and Met → Ala168 mutant penicillin acylases from Kluyvera citrophila
    • Martín, J., Prieto, I., Barbero, J. L., Pérez-Gil, J., Mancheño, J. M. and Arche, R. (1990) Thermodynamic profiles of penicillin G hydrolysis catalysed by wild-type and Met → Ala168 mutant penicillin acylases from Kluyvera citrophila. Biochim. Biophys. Acta 1037, 133-139
    • (1990) Biochim. Biophys. Acta , vol.1037 , pp. 133-139
    • Martín, J.1    Prieto, I.2    Barbero, J.L.3    Pérez-Gil, J.4    Mancheño, J.M.5    Arche, R.6
  • 40
    • 0032884396 scopus 로고    scopus 로고
    • Crystal structure of penicillin G acylase from the Bro1 mutant strain of Providencia rettgeri
    • McDonough, M. A., Klei, H. E. and Kelly, J. A. (1999) Crystal structure of penicillin G acylase from the Bro1 mutant strain of Providencia rettgeri. Protein Sci. 8, 1971-1981
    • (1999) Protein Sci. , vol.8 , pp. 1971-1981
    • McDonough, M.A.1    Klei, H.E.2    Kelly, J.A.3
  • 42
    • 0035471137 scopus 로고    scopus 로고
    • Generation of new enzymes via covalent modification of existing proteins
    • Qi, D. F., Tann, C. M., Haring, D. and Distefano, M. D. (2001) Generation of new enzymes via covalent modification of existing proteins. Chem. Rev. 101, 3081-3111
    • (2001) Chem. Rev. , vol.101 , pp. 3081-3111
    • Qi, D.F.1    Tann, C.M.2    Haring, D.3    Distefano, M.D.4


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