Role of hydrogen bonding in the interaction between a xylan binding module and xylan

Biochemistry

Volumn 40, Issue 19, 2001, Pages 5700-5707

  Xie, Hefang ^a   Bolam, David N ^a   Nagy, Tibor ^a   Szabó, Lóránd ^b   Cooper, Alan ^c   Simpson, Peter J ^d   Lakey, Jeremy H ^a   Williamson, Michael P ^d   Gilbert, Harry J ^a  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b SZENT ISTVÁN UNIVERSITY   (Hungary)

^c UNIVERSITY OF GLASGOW   (United Kingdom)

^d UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATES; ENTHALPY; ENTROPY; FREE ENERGY; HYDROGEN BONDS; NUCLEAR MAGNETIC RESONANCE; POLYMERS; POLYSACCHARIDES;

AROMATIC RESIDUES;

ENZYMES;

XYLAN;

ARTICLE; BINDING AFFINITY; CELLULOMONAS; GLYCOPROTEIN SYNTHESIS; HYDROGEN BOND; LIGAND BINDING; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL;

ACTINOMYCETALES; AMINO ACID MOTIFS; BETA-GLUCOSIDASE; BINDING SITES; CALORIMETRY; CELLULOSE; CIRCULAR DICHROISM; ENDO-1,4-BETA XYLANASES; HYDROGEN BONDING; LIGANDS; MUTAGENESIS, SITE-DIRECTED; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS; XYLANS; XYLOSIDASES;

BACTERIA (MICROORGANISMS); CELLULOMONAS; CELLULOMONAS FIMI;

EID: 0035873330     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi010034z     Document Type: Article

References (47)

1. Brett, C., and Walden, K. (1990) Physiology and Biochemistry of Plant Cell Walls, Unwin and Hyman, London.
2. Tomme, P., Warren, R. A. J., and Gilkes, N. R. (1995) Adv. Microb. Physiol. 37, 1-81.
3. Atkins, E. D. T. (1992) in Xylan and xylanases: Progress in biotechnology (Visser, J., Beldman, G., van Kusters, S., and Voragen, A. G. L., Eds.) Vol. 7. pp 39-50, Elsevier, Amsterdam.
4. Bolam, D. N., Ciruela, A., McQueen-Mason, S., Simpson, P. J., Williamson, M. P., Rixon, J. E., Boraston, A., Hazlewood, G. P., and Gilbert, H. J. (1998) Biochem. J. 331, 775-781.
5. Gill, J., Rixon, J. R., Bolam, D. N., McQueen-Mason, S., Simpson, P. J., Williamson, M. P., Hazlewood, G. P., and Gilbert, H. J. (1999) Biochem. J. 342, 473-480.
6. Black, G. W., Rixon, J. R., Hazlewood, G. P., Theodorou, M. K., Morris, P., and Gilbert, H. J. (1996) Biochem. J. 319, 515-520.
7. Sakon, J., Irwin, D., Wilson, D. B., and Karplus, P. A. (1997) Nat. Struct. Biol. 4, 810-817.
8. Irwin, D., Shin, D.-H., Zhang, S., Barr, B. K., Sakon, J., Karplus, P. A., and Wilson, D. B. (1998) J. Bacteriol. 180, 1709-1714.
9. Boraston, A. B., McLean, B. W., Kormos, J. M., Alam, M., Gilkes, N. R., Haynes, C. A., Tomme, P., Kilburn. D. G., and Warren, R. A. J. (1999) in Recent Advances in Carbohydrate Engineering (Gilbert, H. J., Davies, G. J., Svensson, B., and Henrissat, B., Eds.) pp 202-211, Royal Society of Chemistry, Cambridge, U.K.
10. Tomme, P., Creagh, A. L., Kilburn, D. G., and Haynes, C. A. (1996) Biochemistry 35, 13885-13894.
11. Creagh, A. L., Ong, E., Jervis, E., Kilburn, D. G., and Haynes, C. A. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 12229-12234.
12. Brun, E., Johnson, P. E., Creagh, L. A., Tomme, P., Webster, P., Haynes, C. A., and McIntosh, L. P. (2000) Biochemistry 39, 2445-2458.
13. Millward-Sadler, S. J., Poole, D. M., Henrissat, B., Hazlewood, G. P., Clarke, J. H., and Gilbert, H. J. (1994) Mol. Microbiol. 11, 375-382.
14. Simpson, P. J., Bolam, D. N., Cooper, A., Ciruela, A., Hazlewood, G. P., Gilbert, H. J., and Williamson, M. P. (1999) Structure 7, 853-864.
15. Wiseman, T., Williston, S., Brands, J. F., and Lin, L.-N. (1989) Anal. Biochem. 179, 131-137.
16. Din, N., Forsythe, I. J., Burntnick, L. D., Gilkes, N. R., Miller, R. C., Jr., Warren, R. A. J., and Kilburn, D. G. (1994) Mol. Microbiol. 11, 747-755.
17. Bray, M. R., Johnson, P. E., Gilkes, N. R., McIntosh, L. P., Kilburn, D. G., and Warren, R. A. J. (1996) Protein Sci. 5, 2311-2318.
18. Nagy, T., Simpson, P. J., Williamson, M. P., Hazlewood, G. P., Gilbert, H. J., and Orosz, L. (1998) FEBS Lett. 429, 312-316.
19. Ponyi, T., Szabó, L., Nagy, T., Orosz, L., Simpson, P. J., Williamson, M. P., and Gilbert, H. J. (2000) Biochemistry 39, 985-991.
20. Simpson, P. J., Xie, H., Bolam, D. N., Gilbert, H. J., and Williamson, M. P. (2000), J. Biol. Chem. 275, 41137-41142.
21. Searle, M. S., Williams, D. H., and Gerhard, U. (1992) J. Am. Chem. Soc. 114, 10697-10704.
22. Kellis, J. T., Nyberg, K., and Fersht, A. R. (1989) Biochemistry 28, 4914-4922.
23. Fersht, A. R. (1985) Enzyme structure and mechanism, 2nd ed., p 301, W. H. Freeman, New York.
24. Brummell, D. A., Sharma, V. P., Anand, N. N., Bilous, D., Dubuc, G., Michniewicz, J., MacKenzie, C. R., Sadowska, J., Sigurskjold, B. W., Sinnott, B., Young, N. M., Bundle, D. R., and Narang, S. A. (1993) Biochemistry 32, 1180-1187.
25. Fersht, A. R., Shi, J. P., Knill-Jones, J., Lowe, D. M., Wilkinson, A. J., Blow, D. M., Brick, P., Carter, P., Waye, M. M. Y., and Winter, G. (1985) Nature 314, 235-238.
26. Street, I. P., Armstrong, C. R., and Withers, S. G. (1986) Biochemistry 25, 6021-6027.
27. Lemieux, R. U. (1989) Chem. Soc. Rev. 18, 347-374.
28. Lumry, R., and Rajender, S. (1970) Biopolymers 9, 1125-1227.
29. Jencks, W. P. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 4046-4050.
30. Lemieux, R. U., Delbaere, L. T. J., Beierbeck, H., and Spohr, U. (1991) Host-guest molecular interactions from chemistry to biology, pp 231-248. Ciba Foundation Symposium, Wiley, Chichester, U.K.
31. Toone, E. J. (1994) Curr. Opin. Struct. Biol. 4, 719-728.
32. Lemieux, R. U. (1996) Acc. Chem. Res. 29, 373-380.
33. Swaminathan, C. P., Surolia, N., and Surolia, A. (1998) J. Am. Chem. Soc 120, 5153-5159.
34. Weis, W. I., and Drickamer, K. (1996) Annu. Rev. Biochem. 65, 441-473.
35. Vyas, N. K. (1991) Curr. Opin. Struct. Biol. 1, 732-740.
36. Denisov, V. P., Venu, K., Peters, J., Horlein, H. D., and Halle, B. (1997) J. Phys. Chem. B 101, 9380-9389.
37. Searle, M. S., and Williams, D. H. (1992) J. Am. Chem. Soc. 114, 10690-10697.
38. Williams, B. A., Chervenak, M. C., and Toone, E. J. (1992) J. Biol. Chem. 267, 22907-22911.
39. Ramkumar, R., Surolia, A., and Podder, S. K. (1995) Biochem. J. 308, 237-241.
40. Weber, G. (1993) J. Phys. Chem. 97, 7108-7115.
41. Williamson, M. P., and Williams, D. H. (1984) Eur. J. Biochem. 138, 345-348.
42. Searle, M. S., Sharman, G. J., Groves, P., Benhamu, B., Beauregard, D. A., Westwell, M. S., Dancer, R. J., Maguire, A. J., Try, A. C., and Williams, D. H. (1996) J. Chem. Soc., Perkin Trans. 1, 2781-2786.
43. Williams, D. H., Bardsley, B., Tsuzuki, W., and Maguire, A. J. (1997) Chem. Biol. 4, 507-512.
44. Quiocho, F. A. (1991 ) Curr. Opin. Struct. Biol. 1, 922-933.
45. Creighton, T. E. (1993) Proteins. 2nd ed., pp 165-167, W. H. Freeman, New York.
46. Quiocho, F. A. (1989) Pure Appl. Chem. 61, 1293-1306.
47. Sharon, N. (1993) Trends Biochem. Sci. 18, 221-226.