-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequences of two proteins
-
Needleman S.B., Wunsch C.D. A general method applicable to the search for similarities in the amino acid sequences of two proteins. J. Mol. Biol. 48:1970;443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
3
-
-
0031865006
-
Touring protein fold space with DALI/FSSP
-
Holm L., Sander C. Touring protein fold space with DALI/FSSP. Nucl. Acids Res. 26:1998;316-319.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 316-319
-
-
Holm, L.1
Sander, C.2
-
4
-
-
0027122441
-
Familiar strangers
-
Murzin A.G. Familiar strangers. Nature. 360:1992;635.
-
(1992)
Nature
, vol.360
, pp. 635
-
-
Murzin, A.G.1
-
5
-
-
0027181134
-
The PROSITE dictionary of sites and patterns in proteins, its current status
-
Bairoch A. The PROSITE dictionary of sites and patterns in proteins, its current status. Nucl. Acids Res. 21:1993;3097-3103.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 3097-3103
-
-
Bairoch, A.1
-
7
-
-
0036468670
-
Evolutionary predictions of binding surfaces and interactions
-
Olivier L., Mathew E.S. Evolutionary predictions of binding surfaces and interactions. Struct. Biol. 12:2002;21-27.
-
(2002)
Struct. Biol.
, vol.12
, pp. 21-27
-
-
Olivier, L.1
Mathew, E.S.2
-
8
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm L., Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233:1993;123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
9
-
-
0029936121
-
Surprising similarities in structure comparison
-
Gibrat J.F., Madej T., Bryant S.H. Surprising similarities in structure comparison. Struct. Biol. 6:1996;377-385.
-
(1996)
Struct. Biol.
, vol.6
, pp. 377-385
-
-
Gibrat, J.F.1
Madej, T.2
Bryant, S.H.3
-
10
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin A.G., Brenner S.E., Hubbard T., Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:1995;536-539.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-539
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
11
-
-
0033985050
-
Assigning genomic sequences to CATH
-
Pearl F.M.G., Lee D., Bray J.E., Sillitoe I., Todd A.E., Harrison A.P., et al. Assigning genomic sequences to CATH. Nucl. Acids Res. 28:2000;277-282.
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 277-282
-
-
Pearl, F.M.G.1
Lee, D.2
Bray, J.E.3
Sillitoe, I.4
Todd, A.E.5
Harrison, A.P.6
-
12
-
-
0027967593
-
A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures
-
Artymiuk P.J., Poirette A.R., Grindley H.M., Rice D.W., Willett P. A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures. Mol. Biol. 243:1994;327-344.
-
(1994)
Mol. Biol.
, vol.243
, pp. 327-344
-
-
Artymiuk, P.J.1
Poirette, A.R.2
Grindley, H.M.3
Rice, D.W.4
Willett, P.5
-
13
-
-
0029973830
-
Derivation of 3D coordinate templates for searching structural databases: Application to Ser-His-Asp catalytic triads in the serine proteinases and lipases
-
Wallace A.C., Laskowski R.A., Thornton J.M. Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases. Protein Sci. 5:1996;1001-1013.
-
(1996)
Protein Sci.
, vol.5
, pp. 1001-1013
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
14
-
-
0033548460
-
Three-dimensional structure analysis of PROSITE patterns
-
Kasuya A., Thornton J.M. Three-dimensional structure analysis of PROSITE patterns. J. Mol. Biol. 286:1999;1673-1691.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1673-1691
-
-
Kasuya, A.1
Thornton, J.M.2
-
15
-
-
0037459071
-
Functional sites in protein families uncovered via an objective and automated graph theoretic approach
-
Wangikar P.P., Tendulkar A.V., Ramya S., Mali D.N., Sarawagi S. Functional sites in protein families uncovered via an objective and automated graph theoretic approach. J. Mol. Biol. 326:2003;955-978.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 955-978
-
-
Wangikar, P.P.1
Tendulkar, A.V.2
Ramya, S.3
Mali, D.N.4
Sarawagi, S.5
-
16
-
-
0032568859
-
Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution
-
Russell R.B. Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution. J. Mol. Biol. 279:1998;1211-1227.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 1211-1227
-
-
Russell, R.B.1
-
17
-
-
0030759097
-
The tortuous story of Asp.His.Ser: Structural analysis of small alpha. Greek-chymotrypsin
-
Blow D.M. The tortuous story of Asp.His.Ser: structural analysis of small alpha. Greek-chymotrypsin. Trends Biochem. Sci. 22:1997;405-408.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 405-408
-
-
Blow, D.M.1
-
18
-
-
0039060770
-
Uber die vollen Invariantensysteme
-
Hilbert D. Uber die vollen Invariantensysteme. Math. Ann. 42:1893;313-373.
-
(1893)
Math. Ann.
, vol.42
, pp. 313-373
-
-
Hilbert, D.1
-
21
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis. 18:1997;2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
22
-
-
0035793708
-
Tiny TIM: A small tetrameric, hyperthermostable triosephosphate isomerase
-
Walden H., Bell G.S., Rupert J.M., Russell B., Siebers R.H., Garry L.T. Tiny TIM: a small tetrameric, hyperthermostable triosephosphate isomerase. J. Mol. Biol. 306:2001;745-757.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 745-757
-
-
Walden, H.1
Bell, G.S.2
Rupert, J.M.3
Russell, B.4
Siebers, R.H.5
Garry, L.T.6
-
23
-
-
0032538281
-
Differences in the intersubunit contacts in triosephosphate isomerase from two closely related pathogenic trypanosomes
-
Maldonado E., García M.S., Moreno A., Cabrera N., Ramos G.G., et al. Differences in the intersubunit contacts in triosephosphate isomerase from two closely related pathogenic trypanosomes. J. Mol. Biol. 283:1998;193-203.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 193-203
-
-
Maldonado, E.1
García, M.S.2
Moreno, A.3
Cabrera, N.4
Ramos, G.G.5
-
24
-
-
0036382928
-
The crystal structure of human Cathepsin F and its implications for the development of novel immunomodulators
-
Somoza J.R., Palmer J.T., Ho J.D. The crystal structure of human Cathepsin F and its implications for the development of novel immunomodulators. J. Mol. Biol. 322:2002;559-568.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 559-568
-
-
Somoza, J.R.1
Palmer, J.T.2
Ho, J.D.3
-
25
-
-
0028988335
-
The crystal structure of cruzain: A therapeutic target for Chagas' disease
-
McGrath M.E., Eakin A.E., Engel J.C., McKerrow J.H., Craik C.S., et al. The crystal structure of cruzain: a therapeutic target for Chagas' disease. J. Mol. Biol. 247:1995;251-259.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 251-259
-
-
McGrath, M.E.1
Eakin, A.E.2
Engel, J.C.3
McKerrow, J.H.4
Craik, C.S.5
-
26
-
-
0030592470
-
Three-dimensional structure of endo-1, 4-b-xylanase I from Aspergillus niger: Molecular basis for its low pH optimum
-
Krengel U., Dijkstra B.W. Three-dimensional structure of endo-1, 4-b-xylanase I from Aspergillus niger: molecular basis for its low pH optimum. J. Mol. Biol. 263:1996;70-78.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 70-78
-
-
Krengel, U.1
Dijkstra, B.W.2
-
27
-
-
0028211360
-
Mutational and crystallographic analyses of the active-site residues of the Bacillus circulans xylanase
-
Wakarchuk W.W., Campbell R.L., Sung W.L., Davoodi J., Yaguchi M. Mutational and crystallographic analyses of the active-site residues of the Bacillus circulans xylanase. Protein Sci. 3:1994;467-475.
-
(1994)
Protein Sci.
, vol.3
, pp. 467-475
-
-
Wakarchuk, W.W.1
Campbell, R.L.2
Sung, W.L.3
Davoodi, J.4
Yaguchi, M.5
-
28
-
-
0033010510
-
Crystal structures of thermostable xylose isomerases from Thermus caldophilus and Thermus thermophilus: Possible structural determinants of thermostability
-
Chang C., Park B.C., Lee D.S., Suh S.W. Crystal structures of thermostable xylose isomerases from Thermus caldophilus and Thermus thermophilus: possible structural determinants of thermostability. J. Mol. Biol. 288:1999;623-634.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 623-634
-
-
Chang, C.1
Park, B.C.2
Lee, D.S.3
Suh, S.W.4
-
29
-
-
0028953745
-
Design, synthiesis, and characterization of potent xylose isomerase inhibitor, D-threonohydroxamic acid, and high-resolution X-ray crystallographic structure of the enzyme-inhibitor complex
-
Allen K.N., Lavie A., Petsko G.A., Ringe D. Design, synthiesis, and characterization of potent xylose isomerase inhibitor, D-threonohydroxamic acid, and high-resolution X-ray crystallographic structure of the enzyme-inhibitor complex. Biochemistry. 34:1995;3742-3749.
-
(1995)
Biochemistry
, vol.34
, pp. 3742-3749
-
-
Allen, K.N.1
Lavie, A.2
Petsko, G.A.3
Ringe, D.4
-
30
-
-
0028225131
-
X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis
-
Lavie A., Allen K.N., Petsko G.A., Ringe D. X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis. Biochemistry. 33:1994;5469-5480.
-
(1994)
Biochemistry
, vol.33
, pp. 5469-5480
-
-
Lavie, A.1
Allen, K.N.2
Petsko, G.A.3
Ringe, D.4
-
31
-
-
0033215326
-
Structure of recombinant mouse collagenase-3 (MMP-13)
-
Botos I., Meyer M., Swanson S.M., LemaõÃtre V., Eeckhout Y., Meyer E.F. Structure of recombinant mouse collagenase-3 (MMP-13). J. Mol. Biol. 292:1999;837-844.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 837-844
-
-
Botos, I.1
Meyer, M.2
Swanson, S.M.3
LemaõÃtre, V.4
Eeckhout, Y.5
Meyer, E.F.6
-
32
-
-
0027474009
-
Matrix metalloproteinases
-
Birkedal-Hansen H., Moore W.G., Bodden M.K., Windsor L.J., Birkedal-Hansen B., DeCarlo A., Engler J.A. Matrix metalloproteinases. Oral Biol. Med. 4:1993;197-250.
-
(1993)
Oral Biol. Med.
, vol.4
, pp. 197-250
-
-
Birkedal-Hansen, H.1
Moore, W.G.2
Bodden, M.K.3
Windsor, L.J.4
Birkedal-Hansen, B.5
DeCarlo, A.6
Engler, J.A.7
-
33
-
-
0026521973
-
The C-terminal domain of 72 kDa gelatinase A is not required for catalysis, but is essential for membrane activation and modulates interactions with tissue inhibitors of metalloproteinases
-
Murphy G., Willenbrock F., Ward R.V., Cockett M.I., Eaton D., Docherty A.J. The C-terminal domain of 72 kDa gelatinase A is not required for catalysis, but is essential for membrane activation and modulates interactions with tissue inhibitors of metalloproteinases. Biochem. J. 283:1992;637-641.
-
(1992)
Biochem. J.
, vol.283
, pp. 637-641
-
-
Murphy, G.1
Willenbrock, F.2
Ward, R.V.3
Cockett, M.I.4
Eaton, D.5
Docherty, A.J.6
-
34
-
-
0028895806
-
Localization of tissue inhibitor of matrix metalloproteinases in Alzheimer's disease and normal brain
-
Peress N., Perillo E., Zucker S. Localization of tissue inhibitor of matrix metalloproteinases in Alzheimer's disease and normal brain. J. Neuropathol. Expt. Neurol. 54:1995;16-22.
-
(1995)
J. Neuropathol. Expt. Neurol.
, vol.54
, pp. 16-22
-
-
Peress, N.1
Perillo, E.2
Zucker, S.3
-
35
-
-
0033525223
-
Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 Å resolution
-
Ibuka A., Taguchi A., Ishiguro M., Fushinobu S., Ishii Y., Kamitori. Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 Å resolution. J. Mol. Biol. 285:1999;2079-2087.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2079-2087
-
-
Ibuka, A.1
Taguchi, A.2
Ishiguro, M.3
Fushinobu, S.4
Ishii, Y.5
Kamitori6
-
36
-
-
0034724334
-
Protonation of the lactam nitrogen is the trigger event in the catalytic action of class A-lactamases
-
Atanasov B.P., Mustafi D., Makinen M.W. Protonation of the lactam nitrogen is the trigger event in the catalytic action of class A-lactamases. Proc. Natl Acad. Sci. USA. 97:2000;3160-3165.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 3160-3165
-
-
Atanasov, B.P.1
Mustafi, D.2
Makinen, M.W.3
-
37
-
-
0030867722
-
Thermus thermophilus cytochrome c-552: A new highly thermostable cytochrome c structure obtained by MAD phasing
-
Than M.E., Hof P., Huber R., Bourenkov G.P., Bartunik H.D., Buse G., Soulimane T. Thermus thermophilus cytochrome c-552: a new highly thermostable cytochrome c structure obtained by MAD phasing. J. Mol. Biol. 271:1997;629-644.
-
(1997)
J. Mol. Biol.
, vol.271
, pp. 629-644
-
-
Than, M.E.1
Hof, P.2
Huber, R.3
Bourenkov, G.P.4
Bartunik, H.D.5
Buse, G.6
Soulimane, T.7
-
38
-
-
0034671914
-
Cytochrome c nitrite reductase from Wolinella succinogenes structure at 1.6Å resolution inhibitior bindingand heme-packing motifs
-
Einsle O., Stach P., Messerschmidt A., Simon J., Kroger A., Huber R., Kroneck P.M.H. Cytochrome c nitrite reductase from Wolinella succinogenes structure at 1.6Å resolution inhibitior bindingand heme-packing motifs. J. Biol. Chem. 275:2000;39608-39616.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 39608-39616
-
-
Einsle, O.1
Stach, P.2
Messerschmidt, A.3
Simon, J.4
Kroger, A.5
Huber, R.6
Kroneck, P.M.H.7
-
39
-
-
0031566333
-
Cytochrome cd1 structure: Unusual haem environments in a nitrite reductase and analysis of factors contributing to β-propeller folds
-
Baker S.C., Saunders N.F.W., Willis A.C., Ferguson S.J., Hajdu J., Fülöp V. Cytochrome cd1 structure: unusual haem environments in a nitrite reductase and analysis of factors contributing to β-propeller folds. J. Mol. Biol. 269:1997;440-455.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 440-455
-
-
Baker, S.C.1
Saunders, N.F.W.2
Willis, A.C.3
Ferguson, S.J.4
Hajdu, J.5
Fülöp, V.6
-
40
-
-
0033533408
-
Sequencing the gene encoding Desulfovibrio desulfuricans ATCC 27774 nine-heme cytochrome c
-
Saraiva L.M., LeGall J. Sequencing the gene encoding Desulfovibrio desulfuricans ATCC 27774 nine-heme cytochrome c. Biochem. Biophys. Res. Commun. 262:1999;629-634.
-
(1999)
Biochem. Biophys. Res. Commun.
, vol.262
, pp. 629-634
-
-
Saraiva, L.M.1
LeGall, J.2
-
41
-
-
0033610850
-
Intramolecular regulatory interactions in the Src family kinase Hck probed by mutagenesis of a conserved tryptophan residue
-
LaFevre-Bernt M., Sicheri F., Pico A., Porter M., Kuriyan J., Miller W.T. Intramolecular regulatory interactions in the Src family kinase Hck probed by mutagenesis of a conserved tryptophan residue. J. Biol. Chem. 273:1998;32129-32134.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 32129-32134
-
-
LaFevre-Bernt, M.1
Sicheri, F.2
Pico, A.3
Porter, M.4
Kuriyan, J.5
Miller, W.T.6
-
42
-
-
0035971245
-
Crystallographic and solution studies of an activation loop mutant of the insulin receptor tyrosine kinase
-
Till J.H., Ablooglu A.J., Frankel M., Bishop S.M., Kohanski R.A., Hubbard S.R. Crystallographic and solution studies of an activation loop mutant of the insulin receptor tyrosine kinase. J. Biol. Chem. 276:2001;10049-10055.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10049-10055
-
-
Till, J.H.1
Ablooglu, A.J.2
Frankel, M.3
Bishop, S.M.4
Kohanski, R.A.5
Hubbard, S.R.6
-
43
-
-
0032559380
-
The X-ray structure of a complex between a β-glucosidase and the ring-opened form of gluconolactone has been solved recently
-
Sanz-Aparicio J., Hermoso J.A., Martínez-Ripoll M., Lequerica J.L., Polaina J. The X-ray structure of a complex between a β-glucosidase and the ring-opened form of gluconolactone has been solved recently. J. Mol. Biol. 275:1998;491-502.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 491-502
-
-
Sanz-Aparicio, J.1
Hermoso, J.A.2
Martínez-Ripoll, M.3
Lequerica, J.L.4
Polaina, J.5
-
44
-
-
0346461016
-
SDS-resistant active and thermostable dimers are obtained from the dissociation of homotetrameric beta glycosidase from hyperthermophilic Sulfolobus solfataricus in SDS. Stabilizing role of the A-C intermonomeric interface
-
Gentile F., Amodeo P., Febbraio F., Picaro F., Motta A., Formisano S., Nucci R. SDS-resistant active and thermostable dimers are obtained from the dissociation of homotetrameric beta glycosidase from hyperthermophilic Sulfolobus solfataricus in SDS. Stabilizing role of the A-C intermonomeric interface. J. Biol. Chem. 277:2002;44050-44060.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 44050-44060
-
-
Gentile, F.1
Amodeo, P.2
Febbraio, F.3
Picaro, F.4
Motta, A.5
Formisano, S.6
Nucci, R.7
-
45
-
-
0034054726
-
The crystal structure of small beta Greek-glucosidase from Bacillus circulans sp. Alkalophilus: Ability to form long polymeric assemblies
-
Hakulinen N., Paavilainen S., Korpela T., Rouvinen J. The crystal structure of small beta Greek-glucosidase from Bacillus circulans sp. Alkalophilus: ability to form long polymeric assemblies. J. Struct. Biol. 129:2000;69-79.
-
(2000)
J. Struct. Biol.
, vol.129
, pp. 69-79
-
-
Hakulinen, N.1
Paavilainen, S.2
Korpela, T.3
Rouvinen, J.4
-
46
-
-
0034725556
-
Structure of human rhinovirus serotype 2 (HRV2)
-
Verdaguer N., Blaas D., Fita I. Structure of human rhinovirus serotype 2 (HRV2). J. Mol. Biol. 300:2000;1179-1194.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 1179-1194
-
-
Verdaguer, N.1
Blaas, D.2
Fita, I.3
-
48
-
-
0033548190
-
Iron superoxide dismutase from the archaeon Sulfolobus solfataricus: Analysis of structure and thermostability
-
Ursby T., Adinolfi B.S., Al-Karadaghi S., De Vendittis E., Bocchini V. Iron superoxide dismutase from the archaeon Sulfolobus solfataricus: analysis of structure and thermostability. J. Mol. Biol. 289:1999;189-205.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 189-205
-
-
Ursby, T.1
Adinolfi, B.S.2
Al-Karadaghi, S.3
De Vendittis, E.4
Bocchini, V.5
-
49
-
-
0032575521
-
A glutamate bridge is essential for dimer stability and metal selectivity in manganese superoxide dismutase
-
Whittaker M.M., Whittaker J.W. A glutamate bridge is essential for dimer stability and metal selectivity in manganese superoxide dismutase. J. Biol. Chem. 273:1998;22188.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 22188
-
-
Whittaker, M.M.1
Whittaker, J.W.2
-
50
-
-
0036893048
-
Data mining the Protein Data Bank: Residue interactions
-
Oldfield T. Data mining the Protein Data Bank: residue interactions. Proteins: Struct. Funct. Genet. 49:2002;510-528.
-
(2002)
Proteins: Struct. Funct. Genet.
, vol.49
, pp. 510-528
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-
Oldfield, T.1
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