Preferential de Novo Methylation of Cytosine Residues in Non-CpG Sequences by a Domains Rearranged DNA Methyltransferase from Tobacco Plants

Journal of Biological Chemistry

Volumn 278, Issue 43, 2003, Pages 42386-42393

  Wada, Yuko ^a   Ohya, Hitoshi ^a   Yamaguchi, Yube ^a   Koizumi, Nozomu ^a   Sano, Hiroshi ^a  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; ENZYMES; NITROGEN COMPOUNDS; TISSUE;

CYTOSINES;

DNA;

AMINO ACID; COMPLEMENTARY DNA; CYTOSINE; DNA BASE; DNA METHYLTRANSFERASE; PROTEIN NTDRM1; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BASE PAIRING; CELL CYCLE; CELL NUCLEUS; CPG ISLAND; DNA SEQUENCE; ENZYME ACTIVITY; GENE MAPPING; METHYLATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; SEQUENCE ANALYSIS; TOBACCO;

BASE SEQUENCE; CYTOSINE; DNA (CYTOSINE-5-)-METHYLTRANSFERASE; DNA METHYLATION; KINETICS; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PLANT COMPONENTS; PLANT PROTEINS; SUBSTRATE SPECIFICITY; TISSUE DISTRIBUTION; TOBACCO;

ARABIDOPSIS; EMBRYOPHYTA; INSECTA; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM; ZEA MAYS;

EID: 0142149104     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M303892200     Document Type: Article

References (41)

1. Yoder, J. A., Walsh, C. P., and Bestor, T. H. (1997) Trends Genet. 13, 335-340
2. Bird, A. (2002) Genes Dev. 16, 6-21
3. Miura, A., Yonebayashi, S., Watanabe, K., Toyama, T., Shimada, H., and Kakutani, T. (2001) Nature 411, 212-214
4. Wassenegger, M. (2000) Plant Mol. Biol. 43, 203-220
5. Jacobsen, S. E., and Meyerowitz, E. M. (1997) Science 277, 1100-1103
6. Chuang, L. S.-H., Ian, H.-I., Koh, T.-W., Ng, H.-H., Xu, G., and Li, B. F. L. (1997) Science 277, 1996-2000
7. Okano, M., Xie, S. P., and Li, E. (1998) Nat. Genet. 19, 219-220
8. Finnegan, E. J., and Kovac, K. A. (2000) Plant Mol. Biol. 43, 189-201
9. Finnegan, E. J., and Dennis, E. S. (1993) Nucleic Acids Res. 21, 2383-2388
10. Finnegan, E. J., Peacock, W. J., and Dennis, E. S. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 8449-8454
11. Ronemus, M. J., Galbiati, M., Ticknor, C., Chen, J., and Dellaporta, S. L. (1996) Science 273, 654-657
12. Nakano, Y., Steward, N., Kusano, T., and Sano, H. (2000) Plant Cell Physiol. 41, 448-457
13. Lindroth, A. M., Cao, X., Jackson, J. P., Zilberman, D., McCallum, C. M., Henikoff, S., and Jacobsen, S. E. (2001) Science 292, 2077-2080
14. Tompa, R., MaCallum, C. M., Delrow, J., Henikoff, J. G., van Steensel, B., and Henikoff, S. (2002) Curr. Biol. 12, 65-68
15. Cao, X., Springer, N. M., Muszynski, M. G., Phillips, R. L., Kaeppler, S., and Jacobsen, S. E. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 4979-4984
16. Cao, X., and Jacobsen, S. (2002) Curr. Biol. 12, 1138-1144
17. Nagata, T., Takabe, I., and Matsui, C. (1981) Mol. Gen. Genet. 184, 161-165
18. Hara, K., Yagi, M., Koizumi, N., Kusano, T., and Sano, H. (2000) Plant Cell Physiol. 41, 684-691
19. Bevan, M. (1984) Nucleic Acids Res. 12, 8711-8721
20. Hood, E. E., Gelvin, S. B., Melchers, L. S., and Hoekema, A. (1993) Transgenic Res. 2, 208-218
21. An, G. (1985) Plant Physiol. 79, 568-570
22. Steward, N., Kusano, T., and Sano, H. (2000) Nucleic Acids Res. 28, 3250-3259
23. Hernandez, A., and Ruiz, M. T. (1998) Bioinformatics 14, 227-228
24. Raizis, A. M., Schmitt, F., and Jost, J. P. (1995) Anal. Biochem. 226, 161-166
25. Murray, M. G., and Thompson, W. F. (1980) Nucleic Acids Res. 8, 4321-4325
26. Chomczynski, P., and Sacchi, N. (1987) Anal. Biochem. 162, 156-159
27. Yoda, H., Ogawa, M., Yamaguchi, Y., Koizumi, N., and Sano, H. (2002) Mol. Genet. Genom. 267, 154-161
28. Steward, N., Ito, M., Yamaguchi, Y., Koizumi, N., and Sano, H. (2002) J. Biol. Chem. 277, 37741-37746
29. Robertson, K. D., and Wolffe, A. P. (2000) Nat. Rev. Genet. 1, 11-19
30. Holliday, R., and Pugh, J. E. (1975) Science 187, 226-232
31. Ramsahoye, B. H., Biniszkiewicz, D., Lyko, F., Clark, V., Bird, A. P., and Jaenisch, R. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 5237-5242
32. Selker, E. U., Freitag, M., Kothe, G. O., Margolin, B. S., Rountree, M. R., Allis, C. D., and Tamaru, H. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16485-16490
33. Papa, C. H., Springer, N. M., Muszynski, M. G., Meeley, R., and Kaeppler, S. M. (2001) Plant Cell 13, 1919-1928
34. Cao, X., and Jacobsen, S. E. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16491-16498
35. Wakefield, R. I. D., Smith, B. O., Nan, X., Free, A., Soterio, A., Uhrin, D., Bird, A. P., and Barlow, P. N. (1999) J. Mol. Biol. 291, 1055-1065
36. Ehrlich M. (2003) J. Cell. Biochem. 88, 899-910
37. Wassenegger, M., and Pelissier, T. (1998) Plant Mol. Biol. 37, 349-362
38. Jones, L., Ratcliff, F., and Baulcombe, D. C. (2001) Curr. Biol. 11, 747-757
39. Jost, J. P., Siegmann, M., Sun, L., and Leung, R. (1995) J. Biol. Chem. 270, 9734-9739
40. Gong, Z., Morales-Ruiz, T., Ariza, R. R., Roldan-Arjona, T., David, L., and Zhu, J. K. (2002) Cell 111, 803-814
41. Hofmann, K., and Bucher, P. (1996) Trends Biochem. Sci. 21, 172-173