Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 21, 2003, Pages 12027-12032

  Horton, Jay D ^a   Shah, Nila A ^b   Warrington, Janet A ^b   Anderson, Norma N ^a   Park, Sahng Wook ^a   Brown, Michael S ^a   Goldstein, Joseph L ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b Thermo Fisher Scientific   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; CARRIER PROTEIN; CHOLESTEROL; FATTY ACID; LIPID; OLIGONUCLEOTIDE; SREBP CLEAVAGE ACTIVATING PROTEIN; STEROL REGULATORY ELEMENT BINDING PROTEIN 1A; STEROL REGULATORY ELEMENT BINDING PROTEIN 2; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CHOLESTEROL METABOLISM; DNA HYBRIDIZATION; DNA MICROARRAY; FATTY ACID METABOLISM; GENE EXPRESSION; GENE IDENTIFICATION; KNOCKOUT MOUSE; LIPID METABOLISM; LIVER; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN INDUCTION; TRANSGENIC MOUSE; UNINDEXED SEQUENCE;

ANIMALS; CCAAT-ENHANCER-BINDING PROTEINS; CHOLESTEROL; DNA-BINDING PROTEINS; FATTY ACIDS; GENE EXPRESSION PROFILING; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; LIVER; MALE; MEMBRANE PROTEINS; MICE; MICE, KNOCKOUT; MICE, TRANSGENIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; STEROL REGULATORY ELEMENT BINDING PROTEIN 1; STEROL REGULATORY ELEMENT BINDING PROTEIN 2; TRANSCRIPTION FACTORS;

ANIMALIA; MUS MUSCULUS;

EID: 0142027805     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1534923100     Document Type: Article

References (36)

1. Horton, J. D., Goldstein, J. L. & Brown, M. S. (2002) J. Clin. Invest. 109, 1125-1131.
2. Goldstein, J. L., Rawson, R. B. & Brown, M. S. (2002) Arch. Biochem. Biophys. 397, 139-148.
3. Yang, T., Espenshade, P. J., Wright, M. E., Yabe, D., Gong, Y., Aebersold, R., Goldstein, J. L. & Brown, M. S. (2002) Cell 110, 489-500.
4. Yabe, D., Brown, M. S. & Goldstein, J. L. (2002) Proc. Natl. Acad. Sci. USA 99, 12753-12758.
5. Horton, J. D., Shimomura, I., Brown, M. S., Hammer, R. E., Goldstein, J. L. & Shimano, H. (1998) J. Clin. Invest. 101, 2331-2339.
6. Shimano, H., Horton, J. D., Hammer, R. E., Shimomura, I., Brown, M. S. & Goldstein, J. L. (1996) J. Clin. Invest. 98, 1575-1584.
7. Matsuda, M., Korn, B. S., Hammer, R. E., Moon, Y.-A., Komuro, R., Horton, J. D., Goldstein, J. L., Brown, M. S. & Shimomura, I. (2001) Genes Dev. 15, 1206-1216.
8. Edwards, P. A., Tabor, D., Kast, H. R. & Venkateswaran, A. (2000) Biochim. Biophys. Acta 1529, 103-113.
9. Mahadevappa, M. & Warrington, J. A. (1999) Nat. Biotechnol. 17, 1134-1136.
10. Seidah, N. G., Benjannet, S., Wickham, L., Marcinkiewicz, J., Jasmin, S. B., Stifani, S., Basak, A., Prat, A. & Chretien, M. (2003) Proc. Natl. Acad. Sci. USA 100, 928-933.
11. Abifadel, M., Varret, M., Rabes, J.-P., Allard, D., Ouguerram, K., Devillers, M., Cruaud, C., Benjannet, S., Wickham, L., Erlich, D., et al. (2003) Nat. Genet. 34, 154-156.
12. Soccio, R. E., Adams, R. M., Romanowski, M. J., Sehayek, E., Burley, S. K. & Breslow, J. L. (2002) Proc. Natl. Acad. Sci. USA 99, 6943-6948.
13. Tsujishita, Y. & Hurley, J. H. (2000) Nat. Struct. Biol. 7, 408-414.
14. Borgese, N., D'Arrigo, A., De Silvestris, M. & Pietrini, G. (1993) FEBS Lett. 325, 70-75.
15. Kasus-Jacobi, A., Ou, J., Bashmakov, Y. K., Shelton, J. M., Richardson, J. A., Goldstein. J. L. & Brown, M. S. (2003) J. Biol. Chem. 278, 32380-32389.
16. Edwards, P. A., Kast, H. R. & Anisfeld, A. M. (2002) J. Lipid Res. 43, 2-12.
17. Oh, S.-Y., Park, S.-K., Kim, J.-W., Ahn, Y.-H., Park, S.-W. & Kim, K.-S. (2003) J. Biol. Chem. 278, 28410-28417.
18. Mater, M. K., Thelen, A. P., Pan, D. A. & Jump, D. B. (1999) J. Biol. Chem. 274, 32725-32732.
19. Shimomura, I., Shimano, H., Korn, B. S., Bashmakov, Y. & Horton, J. D. (1998) J. Biol. Chem 273, 35299-35306.
20. Park, E., Park, S.K., Wang, C., Xu, J., LaFauci, G. & Schuller-Levis, G. (2002) Biochim. Biophys. Acta 1574, 403-406.
21. Berge, K. E., Tian, H., Graf, G. A., Yu, L., Grishin, N. V., Schultz. J., Kwiterovich, P., Shan, B., Barnes, R. & Hobbs, H. H. (2000) Science 290, 1771-1775.
22. Repa, J. J., Berge, K. E., Pomajzl, C., Richardson. J. A., Hobbs, H. & Mangelsdorf, D. J. (2002) J. Biol. Chem. 277, 18793-18800.
23. DeBose-Boyd. R. A., Ou, J., Goldstein, J. L. & Brown, M. S. (2001) Proc. Natl. Acad. Sci. USA 98, 1477-1482
24. Cao, G., Beyer, T. P., Yang, X. P., Schmidt, R. J., Zhang, Y., Bensch, W. R., Kauffman, R. F., Gao, H., Ryan, T. P., Liang, Y., et al. (2002) J. Biol. Chem. 277, 39561-39565.
25. Huebert, R. C., Splinter, P. L., Garcia, F., Marinelli, R. A. & LaRusso, N. F. (2002) J. Biol. Chem. 277, 22710-22717.
26. Luckey, S. W. & Petersen, D. R. (2001) Arch. Biochem. Biophys. 389, 77-83.
27. Baranano, D. E., Rao, M., Ferris, C. D. & Snyder, S. H. (2002) Proc. Natl. Acad. Sci. USA 99, 16093-16098.
28. Nokelainen, P., Peltoketo, H., Vihko, R. & Vihko, P (1998) Mol. Endocrinol. 12, 1048-1059.
29. Misawa, K., Horiba, T., Arimura, N., Hirano, Y., Inoue, J., Emoto, N., Shimano, H., Shimizu, M. & Sato, R. (July 10, 2003) J. Biol. Chem., 10.1074/jbc.M302387200.
30. Repa, J. J., Liang, G., Ou, J., Bashmakov, Y., Lobaccaro, J.-M. A., Shimomura, I., Shan, B., Brown, M. S., Goldstein, J. L. & Mangelsdorf, D. J. (2000) Genes Dev. 14, 2819-2830.
31. Amemiya-Kudo, M., Shimano, H., Yoshikawa, T., Yahagi, N., Hasty, A. H., Okazaki, H., Tamura, Y., Shionoiri, F., Iizuka, Y., Ohashi, K., et al. (2000) J. Biol. Chem. 275, 31078-31085.
32. Joseph, S. B., Laffitte, B. A., Patel, P. H., Watson, M. A., Matsukuma, K. E., Walczak, R., Collins, J. L., Osborne, T. F. & Tontonoz, P. (2002) J. Biol. Chem. 277, 11019-11025.
33. Pissios, P., Kan, H. Y. Nagaoka, S. & Zannis, V. I. (1999) Arterioscler. Thromb. Vasc. Biol. 19, 1456-1469.
34. Lopez, D. & McLean, M. P. (1999) Endocrinology 140, 5669-5681.
35. del Castillo-Olivares, A. & Gil, G. (2002) J. Biol. Chem. 277, 6750-6757.
36. Neuschwander-Tetri, B. A. & Caldwell, S. H. (2003) Hepatology 37, 1202-1219.