Protein-protein association kinetics and protein docking

Current Opinion in Structural Biology

Volumn 12, Issue 1, 2002, Pages 36-40

  Camacho, Carlos J ^a   Vajda, Sandor ^a  

^a Boston University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOCKING PROTEIN; SOLVENT;

BIOFILTER; COMPLEX FORMATION; KINETICS; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; REGULATORY MECHANISM; REVIEW; SCORING SYSTEM; TECHNIQUE;

EID: 0036468396     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-440X(02)00286-5     Document Type: Review

References (46)

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5. Docking unbound proteins using shape complementarity, desolvation and electrostatics
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13. The atomic structure of protein-protein recognition sites
14. Wet and dry interfaces: The role of solvent in protein-protein and protein-DNA recognition
15. Protein domain interfaces: Characterization and comparison with oligomeric protein interfaces
16. Residue frequencies and pairing preferences at protein-protein interfaces
17. Conservation of polar residues as hot spots at protein interfaces
18. Protein functional epitopes: Hot spots, dynamics and combinatorial libraries
19. Examination of shape complementarity in docking of unbound proteins
20. Electrostatic contributions to protein-protein interactions: Fast energetic filters for docking and their physical basis
21. Prediction of protein interaction sites from sequence profile and residue neighbor list
22. Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking
23. Free energy decomposition of protein-protein interactions
24. Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear Overhauser enhancement data and dipolar couplings by rigid body minimization
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26. Comparison of protein-protein interactions in serine protease inhibitor and antibody-antigen complexes: Implications for the protein docking problem
27. Rapid, electrostatically assisted association of proteins
28. Kinetics of desolvation-mediated protein-protein binding
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30. Simulation of the diffusional association of barnase and barstar
31. Disparate ionic-strength dependencies of on and off rates in protein-protein association
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34. Computer simulation of protein-protein interactions
35. New insights into the mechanism of protein-protein association
36. Dynamical view of the positions of key side chains in protein-protein recognition
37. Combined conformational search and finite-difference Poisson-Boltzmann approach for flexible docking
38. Rational design of faster associating and tighter binding protein complexes
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40. Reaching the global minimum in docking simulations: A Monte Carlo energy minimization approach using Bezier splines
41. PRODOCK: Software package for protein modeling and docking
42. Detailed ab initio prediction of lysozyme-antibody complex with 1.6 Å accuracy
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