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Novel thrombin inhibitors that are based on a macrocyclic tripeptide motif
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Design, synthesis, and kinetic evaluation of a unique class of elastase inhibitors, the peptidyl α-ketobenzoxazoles, and the X-ray crystal structure of the covalent complex between porcine pancreatic elastase and Ac-Ala-Pro-Val-2-benzoxazole
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(a) Edwards, P. D.; Meyer, E. F., Jr.; Vijayalakshmi, J.; Tuthill, P. A. ; Andisik, D. A.; Gomes, B.; Strimpler, A. J. Design, synthesis, and kinetic evaluation of a unique class of elastase inhibitors, the peptidyl α-ketobenzoxazoles, and the X-ray crystal structure of the covalent complex between porcine pancreatic elastase and Ac-Ala-Pro-Val-2-benzoxazole. J. Am. Chem. Soc. 1992, 114, 1854-1863.
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Synthesis and structure-activity relationships of peptidyl α-keto heterocycles as novel inhibitors of prolyl endopeptidase
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(b) Tsutsumi, S.; Okonogi, T.; Shibahara, S.; Ohuchi, S.; Hatsushiba, E. ; Patchett, A. A.; Christansen, B. G. Synthesis and structure-activity relationships of peptidyl α-keto heterocycles as novel inhibitors of prolyl endopeptidase. J. Med. Chem. 1994, 37, 3492-3502.
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(c) Matthews, J. H.; Krishnan, R.; Costanzo, M. J.; Maryanoff, B. E.; Tulinsky, A. Crystal structures of thrombin with thiazole-containing inhibitors: probes of the S1′ binding site. Biophys. J. 1996, 71, 2830-2839.
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0042098742
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Preparation of peptidyl heterocyclic ketones useful as tryptase inhibitors. PCT patent application WO 0044733 [U.S Patent 6,469,036 (2002)]
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Costanzo, M.J.1
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29
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0043100654
-
-
note
-
(b) In this paper, we use the descriptors S and R with specific compounds to reflect the absolute stereochemistry at the stereocenter adjacent to the keto group, i.e., at the 2-position, according to the numbering shown for structures 5 and (2S)-6. The arginine-derived segment of (2S)-6 and its congeners possesses the L-Arg configuration.
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-
-
-
30
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0030591692
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O-Benzyl hydroxyproline as a bioisostere for Phe-Pro: Novel dipeptide thrombin inhibitors
-
The synthesis of 8 without experimental details is reported in the following reference: Klein, S. I.; Dener, J. M.; Molino, B. F.; Gardner, C. J.; D'Alisa, R.; Dunwiddie, C. T.; Kasiewski, C.; Leadley, R. J. O-Benzyl hydroxyproline as a bioisostere for Phe-Pro: novel dipeptide thrombin inhibitors. Bioorg. Med. Chem. Lett. 1996, 6, 2225-2230.
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Klein, S.I.1
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Dunwiddie, C.T.6
Kasiewski, C.7
Leadley, R.J.8
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31
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0041597824
-
-
note
-
(a) Tosyl-protected Weinreb amide 9 was used for the synthesis of hydroxylated derivatives (e.g., 6), whereas the corresponding 4-methoxy-2,3,6-trimethylsulfonyl (Mtr)-protected Weinreb amide was preferred for preparing nonhydroxylated derivatives (e.g., 12). Mtr-protected guanidine intermediates were deprotected with trifluoroacetic acid over 6 h at 23 °C rather than anhydrous HF.
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32
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0026731584
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Synthesis of a homologous series of ketomethylene arginyl pseudodipeptides and application to low molecular weight hirudin-like thrombin inhibitors
-
(b) We prepared 9 according to the following reference except that crude 9 was triturated with ethyl acetate rather than being crystallized from ethanol: DiMaio, J.; Gibbs, B.; Lefebvre, J.; Konishi, Y.; Munn, D.; Yue, S. Y.; Hornberger, W. Synthesis of a homologous series of ketomethylene arginyl pseudodipeptides and application to low molecular weight hirudin-like thrombin inhibitors. J. Med. Chem. 1992, 35, 3331-3341.
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DiMaio, J.1
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Hornberger, W.7
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33
-
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0035824539
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Activity of recombinant dengue 2 virus NS3 protease in the presence of a truncated NS2B cofactor, small peptide substrates, and inhibitors
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(c) For an alternative preparation of 9, see: Leung, D.; Schroder, K.; White, H.; Fang, N.-X.; Stoermer, M. J.; Abbenante, G.; Martin, J. L.; Young, P. R.; Fairlie, D. P. Activity of recombinant dengue 2 virus NS3 protease in the presence of a truncated NS2B cofactor, small peptide substrates, and inhibitors. J. Biol. Chem. 2001, 276, 45762-45771. Also, see: Guichard, G.; Briand, J. P.; Friede, M. Synthesis of arginine aldehydes for the preparation of pseudopeptides. Peptide Res. 1993, 6, 121-124.
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Leung, D.1
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Young, P.R.8
Fairlie, D.P.9
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34
-
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0027597846
-
Synthesis of arginine aldehydes for the preparation of pseudopeptides
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(c) For an alternative preparation of 9, see: Leung, D.; Schroder, K.; White, H.; Fang, N.-X.; Stoermer, M. J.; Abbenante, G.; Martin, J. L.; Young, P. R.; Fairlie, D. P. Activity of recombinant dengue 2 virus NS3 protease in the presence of a truncated NS2B cofactor, small peptide substrates, and inhibitors. J. Biol. Chem. 2001, 276, 45762-45771. Also, see: Guichard, G.; Briand, J. P.; Friede, M. Synthesis of arginine aldehydes for the preparation of pseudopeptides. Peptide Res. 1993, 6, 121-124.
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Guichard, G.1
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35
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33750259615
-
Synthesis of cyclo-theonamide B and derivatives
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(d) For the synthesis of Boc-L-Arg(Mtr)N(OMe)Me, see: Deng, J.; Hamada, Y.; Shioiri, T.; Matsunaga, S.; Fusetani, N. Synthesis of cyclo-theonamide B and derivatives. Angew. Chem. Int. Ed. 1994, 33, 1729-1731. Also, see: Kahn, M. PCT Int. Appl. W09630396 A1, 1996 (Example 2).
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Deng, J.1
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36
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33750259615
-
-
PCT Int. Appl. W09630396 A1, 1996 (Example 2)
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(d) For the synthesis of Boc-L-Arg(Mtr)N(OMe)Me, see: Deng, J.; Hamada, Y.; Shioiri, T.; Matsunaga, S.; Fusetani, N. Synthesis of cyclo-theonamide B and derivatives. Angew. Chem. Int. Ed. 1994, 33, 1729-1731. Also, see: Kahn, M. PCT Int. Appl. W09630396 A1, 1996 (Example 2).
-
-
-
Kahn, M.1
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37
-
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0043100652
-
-
note
-
Workup of this reaction was performed with sodium bicarbonate, which is sufficiently alkaline to epimerize the intermediate ketone with prolonged contact. Thus, the desired epimer needs to be isolated and acidified (which stabilizes it against stereomutation) as quickly as possible.
-
-
-
-
38
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0041597742
-
-
note
-
The active diastereomer of 6 possesses the 2S configuration (see section on enzyme inhibition). This 2S structure is contained in the cocrystal with trypsin (see section on X-ray crystallography) and was confirmed by a separate single-crystal X-ray analysis of the sulfate salt of (2S)-6, details of which will be published separately.
-
-
-
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39
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0032484901
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Design of potent selective zinc-mediated protease inhibitors
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Katz, B. A.; Clark, J. M.; Finer-Moore, J. S.; Jenkins, T. E.; Johnson, C. R.; Ross, M. J.; Luong, C.; Moore, W. R.; Stroud, R. M. Design of potent selective zinc-mediated protease inhibitors. Nature (London) 1998, 391, 608-612.
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Luong, C.7
Moore, W.R.8
Stroud, R.M.9
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40
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note
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Details of the X-ray crystal structure for (2S)-6·trypsin will be published separately. Crystallographic coordinates have been deposited with the PDB (RCSB-017762).
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The sheep used in this study have a natural airway hypersensitivity to Ascaris suum antigen and respond to inhaled antigen with early and late airway responses, as well as subsequent airway hyper-responsiveness. For details on this sheep asthma model, see: Abraham, W. M. Pharmacology of allergen-induced early and late airway responses and antigen-induced airway hyper-responsiveness in allergic sheep. Pulmonary Pharmacol. 1989, 2, 33-40 (also, see ref 4).
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For information relative to the increased electron-withdrawing nature of benzothiazole relative to thiazole, see: (a) Chan, A. W. E.; Golec, J. M. C. Prediction of relative potency of ketone protease inhibitors using molecular orbital theory. Bioorg. Med. Chem. 1996, 4, 1673-1677. (b) Edwards, P. D.; Wolanin, D. J.; Andisik, D. W.; Davis, M. W. Peptidyl α-ketoheterocyclic inhibitors of human neutrophil elastase. 2. Effect of varying the heterocyclic ring on in vitro potency. J. Med. Chem. 1995, 38, 76-85. (c) Reference 8a.
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For information relative to the increased electron-withdrawing nature of benzothiazole relative to thiazole, see: (a) Chan, A. W. E.; Golec, J. M. C. Prediction of relative potency of ketone protease inhibitors using molecular orbital theory. Bioorg. Med. Chem. 1996, 4, 1673-1677. (b) Edwards, P. D.; Wolanin, D. J.; Andisik, D. W.; Davis, M. W. Peptidyl α-ketoheterocyclic inhibitors of human neutrophil elastase. 2. Effect of varying the heterocyclic ring on in vitro potency. J. Med. Chem. 1995, 38, 76-85. (c) Reference 8a.
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note
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See the paragraph at the end of this paper regarding Supporting Information.
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