-
1
-
-
0024428420
-
Comparative and functional anatomy of group II catalytic introns - A review
-
Michel F., Umesono K., Ozeki H. Comparative and functional anatomy of group II catalytic introns - a review. Gene. 82:1989;5-30.
-
(1989)
Gene
, vol.82
, pp. 5-30
-
-
Michel, F.1
Umesono, K.2
Ozeki, H.3
-
2
-
-
0029066770
-
Structure and activities of group II introns
-
Michel F., Ferat J.-L. Structure and activities of group II introns. Annu. Rev. Biochem. 64:1995;435-461.
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 435-461
-
-
Michel, F.1
Ferat, J.-L.2
-
3
-
-
0032103821
-
The architectural organization and mechanistic function of group II intron structural elements
-
Qin P.Z., Pyle A.M. The architectural organization and mechanistic function of group II intron structural elements. Curr. Opin. Struct. Biol. 8:1998;301-308.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 301-308
-
-
Qin, P.Z.1
Pyle, A.M.2
-
4
-
-
0035368207
-
The ins and outs of group II introns
-
Bonen L., Vogel J. The ins and outs of group II introns. Trends Genet. 17:2001;322-331.
-
(2001)
Trends Genet.
, vol.17
, pp. 322-331
-
-
Bonen, L.1
Vogel, J.2
-
5
-
-
0022551978
-
A self-splicing RNA excises an intron lariat
-
Peebles C.L., Perlman P.S., Mecklenburg K.L., Petrillo M.L., Tabor J.H., Jarrell K.A., Cheng H.-L. A self-splicing RNA excises an intron lariat. Cell. 44:1986;213-223.
-
(1986)
Cell
, vol.44
, pp. 213-223
-
-
Peebles, C.L.1
Perlman, P.S.2
Mecklenburg, K.L.3
Petrillo, M.L.4
Tabor, J.H.5
Jarrell, K.A.6
Cheng, H.-L.7
-
6
-
-
0022446227
-
Self-splicing of group II introns in vitro: Mapping of the branch point and mutational inhibition of lariat formation
-
Schmelzer C., Schweyen R.J. Self-splicing of group II introns in vitro: mapping of the branch point and mutational inhibition of lariat formation. Cell. 46:1986;557-565.
-
(1986)
Cell
, vol.46
, pp. 557-565
-
-
Schmelzer, C.1
Schweyen, R.J.2
-
7
-
-
0022550426
-
Excised Group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro
-
van der Veen R., Arnberg A.C., van der Horst G., Bonen L., Tabak H.F., Grivell L.A. Excised Group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro. Cell. 44:1986;225-234.
-
(1986)
Cell
, vol.44
, pp. 225-234
-
-
Van Der Veen, R.1
Arnberg, A.C.2
Van Der Horst, G.3
Bonen, L.4
Tabak, H.F.5
Grivell, L.A.6
-
8
-
-
0002319075
-
Catalytic Reaction Mechanisms and Structural Features of Group II Intron Ribozymes
-
F. Eckstein, Lilley D.M.J. New York: Springer
-
Pyle A.M. Catalytic Reaction Mechanisms and Structural Features of Group II Intron Ribozymes. Eckstein F., Lilley D.M.J. Nucleic Acids and Molecular Biology. vol. 10:1996;75-107 Springer, New York.
-
(1996)
Nucleic Acids and Molecular Biology
, vol.10
, pp. 75-107
-
-
Pyle, A.M.1
-
9
-
-
0029942826
-
Reactions catalyzed by group II introns in vitro
-
Perlman P., Podar M. Reactions catalyzed by group II introns in vitro. Methods Enzymol. 264:1996;66-86.
-
(1996)
Methods Enzymol.
, vol.264
, pp. 66-86
-
-
Perlman, P.1
Podar, M.2
-
10
-
-
0028859580
-
A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility
-
Zimmerly S., Guo H., Eskes R., Yang J., Perlman P.S., Lambowitz A.M. A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility. Cell. 83:1995;529-538.
-
(1995)
Cell
, vol.83
, pp. 529-538
-
-
Zimmerly, S.1
Guo, H.2
Eskes, R.3
Yang, J.4
Perlman, P.S.5
Lambowitz, A.M.6
-
11
-
-
0029616336
-
Mechanisms of intron mobility
-
Belfort M., Perlman P.S. Mechanisms of intron mobility. J. Biol. Chem. 270:1995;30237-30240.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 30237-30240
-
-
Belfort, M.1
Perlman, P.S.2
-
12
-
-
0032539968
-
The sequence-specificity of a group II intron ribozyme: Multiple mechanisms for promoting unusually high discrimination against mismatched targets
-
Xiang Q., Qin P.Z., Michels W.J., Freeland K., Pyle A.M. The sequence-specificity of a group II intron ribozyme: multiple mechanisms for promoting unusually high discrimination against mismatched targets. Biochemistry. 37:1998;3839-3849.
-
(1998)
Biochemistry
, vol.37
, pp. 3839-3849
-
-
Xiang, Q.1
Qin, P.Z.2
Michels, W.J.3
Freeland, K.4
Pyle, A.M.5
-
13
-
-
0035793702
-
Guiding ribozyme cleavage through motif recognition: The mechanism of cleavage site selection by a group II intron ribozyme
-
Su L., Qin P., Michels W., Pyle A. Guiding ribozyme cleavage through motif recognition: the mechanism of cleavage site selection by a group II intron ribozyme. J. Mol. Biol. 306:2001;665-668.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 665-668
-
-
Su, L.1
Qin, P.2
Michels, W.3
Pyle, A.4
-
14
-
-
0035199354
-
Group II introns as controllable gene targeting vectors for genetic manipulation of bacteria
-
Karberg M., Guo H., Zhong J., Coon R., Perutka J., Lambowitz A. Group II introns as controllable gene targeting vectors for genetic manipulation of bacteria. Nature Biotechnol. 19:2001;1162-1167.
-
(2001)
Nature Biotechnol.
, vol.19
, pp. 1162-1167
-
-
Karberg, M.1
Guo, H.2
Zhong, J.3
Coon, R.4
Perutka, J.5
Lambowitz, A.6
-
15
-
-
0024401019
-
Structure-function relationships in a self-splicing group II intron: A large part of domain II of the mitochondrial intron aI5 is not essential for splicing
-
Kwakman J.H.J.M., Konings D., Pel H.J., Grivell L.A. Structure-function relationships in a self-splicing group II intron: a large part of domain II of the mitochondrial intron aI5 is not essential for splicing. Nucl. Acids Res. 17:1989;4205-4216.
-
(1989)
Nucl. Acids Res.
, vol.17
, pp. 4205-4216
-
-
Kwakman, J.H.J.M.1
Konings, D.2
Pel, H.J.3
Grivell, L.A.4
-
16
-
-
0035901549
-
Visualizing the solvent-inaccessible core of a group II intron ribozyme
-
Swisher J., Duarte C., Su L., Pyle A. Visualizing the solvent-inaccessible core of a group II intron ribozyme. EMBO J. 20:2001;2051-2061.
-
(2001)
EMBO J.
, vol.20
, pp. 2051-2061
-
-
Swisher, J.1
Duarte, C.2
Su, L.3
Pyle, A.4
-
17
-
-
0026695012
-
Group II introns deleted for multiple substructures retain self-splicing activity
-
Koch J.L., Boulanger S.C., Dib-Hajj S.D., Hebbar S.K., Perlman P.S. Group II introns deleted for multiple substructures retain self-splicing activity. Mol. Cell. Biol. 12:1992;1950-1958.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 1950-1958
-
-
Koch, J.L.1
Boulanger, S.C.2
Dib-Hajj, S.D.3
Hebbar, S.K.4
Perlman, P.S.5
-
18
-
-
0030015953
-
An RNA conformational change between the two chemical steps of group II self-splicing
-
Chanfreau G., Jacquier A. An RNA conformational change between the two chemical steps of group II self-splicing. EMBO J. 15:1996;3466-3476.
-
(1996)
EMBO J.
, vol.15
, pp. 3466-3476
-
-
Chanfreau, G.1
Jacquier, A.2
-
19
-
-
0031552355
-
Multiple tertiary interactions involving domain II of group II self-splicing introns
-
Costa M., Deme E., Jacquier A., Michel F. Multiple tertiary interactions involving domain II of group II self-splicing introns. J. Mol. Biol. 267:1997;520-536.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 520-536
-
-
Costa, M.1
Deme, E.2
Jacquier, A.3
Michel, F.4
-
20
-
-
0029410699
-
Group II intron ribozymes that cleave DNA and RNA linkages with similar efficiency, and lack contacts with substrate 2′-hydroxyl groups
-
Griffin E.A., Qin Z.-F., Michels W.A., Pyle A.M. Group II intron ribozymes that cleave DNA and RNA linkages with similar efficiency, and lack contacts with substrate 2′-hydroxyl groups. Chem. Biol. 2:1995;761-770.
-
(1995)
Chem. Biol.
, vol.2
, pp. 761-770
-
-
Griffin, E.A.1
Qin, Z.-F.2
Michels, W.A.3
Pyle, A.M.4
-
21
-
-
0029382528
-
2+-dependent cross-link traps an active form of domain 3 of a self-splicing group II intron
-
2+-dependent cross-link traps an active form of domain 3 of a self-splicing group II intron. RNA. 1:1995;828-840.
-
(1995)
RNA
, vol.1
, pp. 828-840
-
-
Podar, M.1
Dib-Hajj, S.2
Perlman, P.S.3
-
22
-
-
0343742528
-
Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron
-
Jestin J.-L., Deme E., Jacquier A. Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron. EMBO J. 16:1997;2945-2954.
-
(1997)
EMBO J.
, vol.16
, pp. 2945-2954
-
-
Jestin, J.-L.1
Deme, E.2
Jacquier, A.3
-
23
-
-
0025344901
-
Base-pairing interactions involving the 5′- and 3′- terminal nucleotides of group II self-splicing introns
-
Jacquier A., Michel F. Base-pairing interactions involving the 5′- and 3′- terminal nucleotides of group II self-splicing introns. J. Mol. Biol. 213:1990;437-447.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 437-447
-
-
Jacquier, A.1
Michel, F.2
-
24
-
-
0025755708
-
Splice site selection and role of the lariat in a group II intron
-
Jacquier A., Jacquesson-Breuleux N. Splice site selection and role of the lariat in a group II intron. J. Mol. Biol. 219:1991;415-428.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 415-428
-
-
Jacquier, A.1
Jacquesson-Breuleux, N.2
-
25
-
-
0032401749
-
A map of the binding site for catalytic domain 5 in the core of a group II intron ribozyme
-
Konforti B.B., Liu Q., Pyle A.M. A map of the binding site for catalytic domain 5 in the core of a group II intron ribozyme. EMBO J. 17:1998;7195-7217.
-
(1998)
EMBO J.
, vol.17
, pp. 7195-7217
-
-
Konforti, B.B.1
Liu, Q.2
Pyle, A.M.3
-
26
-
-
0031939815
-
Domain 5 binds near a highly-conserved dinucleotide in the joiner linking domains 2 and 3 of a group II intron
-
Podar M., Zhou J., Zhang M., Franzen J.S., Perlman P.S., Peebles C.L. Domain 5 binds near a highly-conserved dinucleotide in the joiner linking domains 2 and 3 of a group II intron. RNA. 4:1998;151-166.
-
(1998)
RNA
, vol.4
, pp. 151-166
-
-
Podar, M.1
Zhou, J.2
Zhang, M.3
Franzen, J.S.4
Perlman, P.S.5
Peebles, C.L.6
-
27
-
-
0033750527
-
Deletion of a conserved dinucleotide inhibits the second step of group II intron splicing
-
Mikheeva S., Murray H.L., Zhou H., Turczyk B.M., Jarrell K.A. Deletion of a conserved dinucleotide inhibits the second step of group II intron splicing. RNA. 6:2000;1509-1515.
-
(2000)
RNA
, vol.6
, pp. 1509-1515
-
-
Mikheeva, S.1
Murray, H.L.2
Zhou, H.3
Turczyk, B.M.4
Jarrell, K.A.5
-
28
-
-
0028351893
-
Building a kinetic framework for group II intron ribozyme activity: Quantitation of interdomain binding and reaction rate
-
Pyle A.M., Green J.B. Building a kinetic framework for group II intron ribozyme activity: quantitation of interdomain binding and reaction rate. Biochemistry. 33:1994;2716-2725.
-
(1994)
Biochemistry
, vol.33
, pp. 2716-2725
-
-
Pyle, A.M.1
Green, J.B.2
-
29
-
-
0030959348
-
Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: Comparison with in vivo evolution
-
Costa M., Michel F. Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution. EMBO J. 97:1997;3289-3302.
-
(1997)
EMBO J.
, vol.97
, pp. 3289-3302
-
-
Costa, M.1
Michel, F.2
-
30
-
-
0029312926
-
Branch-point attack in group II introns is a highly reversible transesterification, providing a possible proof-reading mechanism for 5′-splice site selection
-
Chin K., Pyle A.M. Branch-point attack in group II introns is a highly reversible transesterification, providing a possible proof-reading mechanism for 5′-splice site selection. RNA. 1:1995;391-406.
-
(1995)
RNA
, vol.1
, pp. 391-406
-
-
Chin, K.1
Pyle, A.M.2
-
31
-
-
0028904152
-
Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: Elucidation of reaction mechanism and structure/function relationships
-
Michels W.J., Pyle A.M. Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: elucidation of reaction mechanism and structure/function relationships. Biochemistry. 34:1995;2965-2977.
-
(1995)
Biochemistry
, vol.34
, pp. 2965-2977
-
-
Michels, W.J.1
Pyle, A.M.2
-
32
-
-
0024508604
-
Phosphorothioates in molecular biology
-
Eckstein F., Gish G. Phosphorothioates in molecular biology. Trends Biochem. Sci. 14:1989;97-100.
-
(1989)
Trends Biochem. Sci.
, vol.14
, pp. 97-100
-
-
Eckstein, F.1
Gish, G.2
-
33
-
-
0030965811
-
Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping (NAIM)
-
Strobel S.A., Shetty K. Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping (NAIM). Proc. Natl Acad. Sci. USA. 94:1997;2903-2908.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 2903-2908
-
-
Strobel, S.A.1
Shetty, K.2
-
34
-
-
0031967099
-
The chemical basis of adenosine conservation throughout the Tetrahymena ribozyme
-
Ortoleva-Donnelly L., Sweczak A.A., Gutell R.R., Strobel S.A. The chemical basis of adenosine conservation throughout the Tetrahymena ribozyme. RNA. 4:1998;498-519.
-
(1998)
RNA
, vol.4
, pp. 498-519
-
-
Ortoleva-Donnelly, L.1
Sweczak, A.A.2
Gutell, R.R.3
Strobel, S.A.4
-
35
-
-
0032404048
-
Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: A NAIM analysis
-
Boudvillain M., Pyle A.M. Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis. EMBO J. 17:1998;7091-7104.
-
(1998)
EMBO J.
, vol.17
, pp. 7091-7104
-
-
Boudvillain, M.1
Pyle, A.M.2
-
36
-
-
0035900006
-
Interaction of the human adenovirus proteinase with its 11-amino acid cofactor pVIc
-
Baniecki M., McGrath W.J., McWhirter S.M., Li C., Toledo D.L., Pellicena P., et al. Interaction of the human adenovirus proteinase with its 11-amino acid cofactor pVIc. Biochemistry. 40:2001;12349-12356.
-
(2001)
Biochemistry
, vol.40
, pp. 12349-12356
-
-
Baniecki, M.1
McGrath, W.J.2
McWhirter, S.M.3
Li, C.4
Toledo, D.L.5
Pellicena, P.6
-
37
-
-
0036292317
-
In the virion, the 11-amino-acid peptide cofactor pVIc is covalently linked to the adenovirus proteinase
-
McGrath W., Aherne K.S., Mangel W.F. In the virion, the 11-amino-acid peptide cofactor pVIc is covalently linked to the adenovirus proteinase. Virology. 296:2002;234-240.
-
(2002)
Virology
, vol.296
, pp. 234-240
-
-
McGrath, W.1
Aherne, K.S.2
Mangel, W.F.3
-
38
-
-
0024022167
-
Group II intron domain 5 facilitates a trans-splicing reaction
-
Jarrell K.A., Dietrich R.C., Perlman P.S. Group II intron domain 5 facilitates a trans-splicing reaction. Mol. Cell. Biol. 8:1988;2361-2366.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 2361-2366
-
-
Jarrell, K.A.1
Dietrich, R.C.2
Perlman, P.S.3
-
39
-
-
0025888264
-
Efficient site-directed mutagenesis using uracil-containing DNA
-
Kunkel T.A., Bebenek K., McClary J. Efficient site-directed mutagenesis using uracil-containing DNA. Methods Enzymol. 204:1991;125-139.
-
(1991)
Methods Enzymol.
, vol.204
, pp. 125-139
-
-
Kunkel, T.A.1
Bebenek, K.2
McClary, J.3
-
40
-
-
0024283277
-
DNA and RNA sequence determination based on phosphorothioate chemistry
-
Gish G., Eckstein F. DNA and RNA sequence determination based on phosphorothioate chemistry. Science. 240:1988;1520-1522.
-
(1988)
Science
, vol.240
, pp. 1520-1522
-
-
Gish, G.1
Eckstein, F.2
-
42
-
-
0034047698
-
Using DNAzymes to cut, process and map RNA molecules for structural studies or modification
-
Pyle A.M., Chu V.T., Jankowsky E., Boudvillain M. Using DNAzymes to cut, process and map RNA molecules for structural studies or modification. Methods Enzymol. 317:2000;140-146.
-
(2000)
Methods Enzymol.
, vol.317
, pp. 140-146
-
-
Pyle, A.M.1
Chu, V.T.2
Jankowsky, E.3
Boudvillain, M.4
-
43
-
-
0029151591
-
Synthesis, deprotection, analysis and purification of RNA and ribozymes
-
Wincott F., DiRenzo A., Shaffer C., Grimm S., Tracz D., Workman C., et al. Synthesis, deprotection, analysis and purification of RNA and ribozymes. Nucl. Acids Res. 23:1995;2677-2684.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 2677-2684
-
-
Wincott, F.1
DiRenzo, A.2
Shaffer, C.3
Grimm, S.4
Tracz, D.5
Workman, C.6
-
44
-
-
0029963656
-
A simple method for 3′-labeling of RNA
-
Huang Z., Szostak J.W. A simple method for 3′-labeling of RNA. Nucl. Acids Res. 24:1996;4360-4361.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 4360-4361
-
-
Huang, Z.1
Szostak, J.W.2
|