Protein and peptide array analysis of autoimmune disease

BioTechniques

Volumn 33, Issue 6 SUPPL., 2002, Pages 66-69

  Robinson, William H ^a,b   Steinman, Lawrence ^a   Utz, Paul J ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMEDICAL ENGINEERING; CLONING; DISEASES; GENES; IMMUNOLOGY; PROTEINS;

AUTOIMMUNE DISEASES;

BIOTECHNOLOGY;

AUTOANTIBODY; ANTIGEN;

ANTIBODY RESPONSE; ARTICLE; ASSAY; AUTOIMMUNE DISEASE; AUTOIMMUNITY; DIABETES MELLITUS; GENE SEQUENCE; GENOME; HUMAN; MEDICAL RESEARCH; MOLECULAR CLONING; MULTIPLE SCLEROSIS; PEPTIDE ARRAY; PROGNOSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN MICROARRAY; PROTEOMICS; RHEUMATOID ARTHRITIS; T LYMPHOCYTE; B LYMPHOCYTE; CHEMISTRY; IMMUNOLOGY; INSTRUMENTATION; METABOLISM; METHODOLOGY; REVIEW;

ANTIGENS; AUTOANTIBODIES; AUTOIMMUNE DISEASES; B-LYMPHOCYTES; HUMANS; PROTEIN ARRAY ANALYSIS; PROTEOMICS; T-LYMPHOCYTES;

EID: 0038605735     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/dec02-robinson     Document Type: Article

References (36)

1. Altman, J.D., P.A. Moss, P.J. Goulder, D.H. Barouch, M.G. McHeyzer-Williams, J.I. Bell, A.J. McMichael, and M.M. Davis. 1996. Phenotypic analysis of antigen-specific T lymphocytes. Science 274:94-96.
2. Anderson, A.C., L.B. Nicholson, K.L. Legge, V. Turchin, H. Zaghouani, and V.K. Kuchroo. 2000. High frequency of autoreactive myelin proteolipid protein-specific T cells in the periphery of naive mice: Mechanisms of selection of the self-reactive repertoire. J. Exp. Med. 191:761-770.
3. Büssow, K., D. Cahill, W. Nietfeld, D. Bancroft, E. Scherzinger, H. Lehrach, and G. Walter. 1998. A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library. Nucleic Acids Res. 26:5007-5008.
4. Casciola-Rosen, L., F. Andrade, D. Ulanet, W. Wong, and A. Rosen. 1999. Cleavage by granzyme B is strongly predictive of autoantigen status. Implications for initiation of autoimmunity. J. Exp. Med. 190:815-826.
5. Celis, J.E., M. Kruhoffer, I. Gromova, C. Frederiksen, M. Ostergaard, T. Thykjaer, P. Gromov, J. Yu, et al. 2000. Gene expression profiling: monitoring transcription and translation products using DNA microarrays and proteomics. FEBS Lett. 480:2-16.
6. Chabas, D., S.E. Baranzini, D. Mitchell, C.C. Bernard, S.R. Rittling, D.T. Denhardt, R.A. Sobel, C. Lock, et al. 2001. The influence of the proinflammatory cytokine, osteopontin, on autoimmune demyelinating disease. Science 294:1731-1735.
7. Devasenathipathy, S., J.G. Santiago, and K. Takehara. 2002. Particle tracking techniques for electrokinetic microchannel flows. Anal. Chem. 74:3704-3713.
8. Fulton, R.J., R.L. McDade, P.L. Smith, L.J. Kienker, and J.R. Kettman, Jr. 1997. Advanced multiplexed analysis with the FlowMetrix system. Clin. Chem. 43:1749-1756.
9. Haab, B.B., M.J. Dunham, and P.O. Brown. 2001. Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2:RESEARCH0004.0001-0004.0013.
10. Hueber, W., P.J. Utz, L. Steinman, and W.H. Robinson. 2002. Autoantibody profiling for the study and treatment of autoimmune disease. Arthritis Res. 4:290-295.
11. Jackson, R. and N. Standart. 1990. Do the poly(A) tail and 3′ untranslated region control mRNA translation? Cell 62:15-24.
12. Jacobson D.L., S.J. Gange, N.R. Rose, and N.M. Graham. 1997. Epidemiology and estimated population burden of selected autoimmune diseases in the United States. Clin. Immunol. Immunopathol. 84:223-243.
13. James, J. and J. Harley. 1998. B-cell epitope spreading in autoimmunity. Immunol. Rev. 164:185-200.
14. Jiang, Z. and J. Wu. 1999. Alternative splicing and apoprosis. Proc. Soc. Exp. Biol. Med. 220:64-72.
15. Joos, T.O., M. Schrenk, P. Hopfl, K. Kroger, U. Chowdhury, D. Stoll, D. Schorner, M. Durr, et al. 2000. A microarray enzyme-linked immunosorbent assay for autoimmune diagnostics. Electrophoresis 21:2641-2650.
16. Kontoyiannis, D., M. Pasparakis, T.T. Pizarro, E Cominelli, and G. Kollias. 1999. Impaired on/off regulation of TNF biosynthesis in mice lacking TNF AU-rich elements: Implications for joint and gut-associated immunopathologies. Immunity 10:387-398.
17. Lock, C., G. Hermans, R. Pedotti, A. Brendolan, E. Schadt, H. Garren, A. Langer-Gould, S. Strober, et al. 2002. Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis. Nat. Med. 8:500-508.
18. Lueking, A., M. Horn, H. Eickhoff, K. Büssow, H. Lehrach, and G. Walter. 1999. Protein microarrays for gene expression and antibody screening. Anal. Biochem. 270:103-111.
19. MacBeath, G. and S. Schreiber. 2000. Printing proteins as microarrays for high-throughput function determination. Science 289:1760-1763.
20. Nicewarner-Pena, S.R., R.G. Freeman, B.D. Reiss, L. He, D.J. Pena, I.D. Walton, R. Cromer, C.D. Keating, and M.J. Natan. 2001. Submicrometer metallic barcodes. Science 294:137-141.
21. Pandey, A. and M. Mann. 2000. Proteomics to study genes and genomes. Nature 405:837-846.
22. Pietropaolo, M. and G.S. Eisenbarth. 2001. Autoantibodies in human diabetes. Curr. Dir. Autoimmun. 4:252-282.
23. Robinson, W.H., C. DiGennaro, W. Hueber, B.B. Haab, M. Kamachi, E.J. Dean, S. Fournel, D. Fong, et al. Autoantigen microarrays for multiplex characterization of autoantibody responses. Nat. Med. 8:295-301.
24. Robinson, W.H., H. Garren, P.J. Utz, and L. Steinman. 2002. Millennium Award. Proteomics for the development of DNA tolerizing vaccines to treat autoimmune disease. Clin. Immunol. 103:7-12.
25. Robinson, W.H., L. Steinman, and P.J. Utz. 2002. Proteomics technologies for the study of autoimmune disease. Arthritis Rheum. 46:885-893.
26. Sheets, M., C. Fox, T. Hunt, G. Vande Woude, and M. Wickens. 1994. The 3′-untranslated regions of c-mos and cyclin mRNAs stimulate translation by regulating cytoplasmic polyadenylation. Genes Dev. 8:926-938.
27. Steinman, L. 1996. A few autoreactive cells in an autoimmune infiltrate control a vast population of nonspecific cells: A tale of smart bombs and the infantry. Proc. Natl. Acad. Sci. USA 93:2253-2256.
28. Steinman, L. 1996. Multiple sclerosis: A coordinated immunological attack against myelin in the central nervous system. Cell 85:299-302.
29. Tuomi, T., M.J. Rowley, W.J. Knowles, Q.Y. Chen, T. McAnally, P.Z. Zimmet, and I.R. Mackay. 1994. Autoantigenic properties of native and denatured glutamic acid decarboxylase: evidence for a conformational epitope. Clin. Immunol. Immunopathol. 71:53-59.
30. Uetz, P., L. Giot, G. Cagney, T.A. Mansfield, R.S. Judson, J.R. Knight, D. Lockshon, V. Narayan, et al. 2000. A comprehensive analysis of protein-protein interactions in Saccaromyces cerevisiae. Nature 403:623-627.
31. Utz, P., M. Hottelet, W. van Venrooij, and P. Anderson. 1998. Association of phosphorylated SR proteins and the U1-small nuclear ribonuclear protein autoantigen complex accompanies apoptotic cell death. J. Exp. Med. 187:547-560.
32. Venter, J., M.D. Adams, E.W. Myers, P.W. Li, R.J. Mural, G.G. Sutton, H.O. Smith, M. Yandell, et al. 2001. The sequence of the human genome. Science 291:1304-1351.
33. von Mühlen, C.A. and E.M. Tan. 1995. Autoantibodies in the diagnosis of systemic rheumatic diseases. Semin. Arthritis Rheum. 24:323-358.
34. Walter, G., K. Büssow, D. Cahill, A. Lueking, and H. Lehrach. 2000. Protein arrays for gene expression and molecular interaction screening. Curr. Opin. Microbiol. 3:298-302.
35. Warren, K., I. Katz, and L. Steinman. 1995. Fine specificity of the antibody response to myelin basic protein in the central nervous system in multiple sclerosis: The minimal B cell epitope and a model of its unique features. Proc. Natl. Acad. Sci. USA 92:11061-11065.
36. Ziauddin, J. and D.M. Sabatini. 2001. Microarrays of cells expressing defined cDNAs. Nature 411:107-110.