Structural study of binding of flagellin by Toll-like receptor 5

Journal of Bacteriology

Volumn 185, Issue 14, 2003, Pages 4243-4247

  Jacchieri, Saul G ^a   Torquato, Ricardo ^c   Brentani, Ricardo R ^b  

^a A C CAMARGO CANCER CENTER   (Brazil)

^b LUDWIG INSTITUTE FOR CANCER RESEARCH   (Brazil)

^c FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

FLAGELLIN; GLUTAMYLISOLEUCYLLEUCYLASPARTYLISOLEUCYLSERYLARGINYLASPARAGINYLGLUTAMYLLEUC INE; LEUCYLGLUTAMINYLARGINYLVALYLARGINYLGLUTAMINYLLEUCYLALANYLVALYLGLUTAMINE; PEPTIDE; TOLL LIKE RECEPTOR; TOLL LIKE RECEPTOR 5; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; ELECTRICITY; LISTERIA MONOCYTOGENES; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN INTERACTION; PROTEIN STRUCTURE; PSEUDOMONAS AERUGINOSA; SALMONELLA ENTERICA; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; BINDING SITES; FLAGELLIN; HYDROPHOBICITY; LISTERIA MONOCYTOGENES; MEMBRANE GLYCOPROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN CONFORMATION; PSEUDOMONAS AERUGINOSA; RECEPTORS, CELL SURFACE; SALMONELLA TYPHIMURIUM; SOFTWARE; TOLL-LIKE RECEPTOR 5; TOLL-LIKE RECEPTORS;

BACTERIA (MICROORGANISMS); LISTERIA; LISTERIA MONOCYTOGENES; NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; SALMONELLA; SALMONELLA ENTERICA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM;

EID: 0038492443     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.14.4243-4247.2003     Document Type: Article

References (35)

1. Beattie, J., and D. J. Flint. 1992. Critical evaluation of a theory of molecular recognition using human insulin-like-growth-factor-I fragment 21 to 40 and its complementary peptide. Biochem. J. 283:473-478.
2. Berman, J., Z. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235-242.
3. Blalock, J., and E. M. Smith. 1984. Hydropathic anti-complementarity of amino acids based on the genetic code. Biochem. Biophys. Res. Commun. 121:203-207.
4. Brentani, R. R. 1988. Biological implications of complementary hydropathy of amino acids. J. Theor. Biol. 135:495-499.
5. Brentani, R. R. 1990. Complementary hydropathy and the evolution of interacting polypeptides. J. Mol. Evol. 31:239-243.
6. Brentani, R. R., S. F. Ribeiro, P. Potocnjak, R. Pasqualini, J. D. Lopes, and C. R. Nakaie. 1988. Characterization of the cellular receptor for fibronectin through a hydropathic complementarity approach. Proc. Natl. Acad. Sci. USA 85:364-367.
7. Chaudhary, P. M., C. Ferguson, V. Nguyen, O. Nguyen, H. F. Massa, M. Eby, A. Jasmin, B. J. Trask, L. Hood, and P. S. Nelson. 1998. Cloning and characterization of two Toll/interleukin-1 receptor-like genes, TIL3 and TIL4: evidence for a multi-gene receptor family in humans. Blood 91:4020-4027.
8. Donnely, M. A., and T. S. Steiner. 2002. Two nonadjacent regions in enteroaggregative Escherichia coli flagellin are required for activation of Toll-liker receptor 5. J. Biol. Chem. 277:40456-40461.
9. Eaton, H. L., R. E. Austin, S. W. Fesik, and S. F. Martin. 1989. NMR study of the possible interaction in solution of angiotensin II with a peptide encoded by angiotensin II complementary RNA. Proc. Natl. Acad. Sci. USA 86:9767-9769.
10. Fassina, G., S. S. Thorgeirson, and J. G. Omichinski. 1989. Sequence directed design of recognition peptides, p. 431-438. In B. Wittman Liebold (ed.) Methods in protein sequence and analysis. Springer, Berlin, Germany.
11. Gillen, K. L., and K. T. Hughes. 1991. Molecular characterization of flgM, a gene encoding a negative regulator of flagellin synthesis in Salmonella typhimurium. J. Bacteriol. 173:6453-6459.
12. Goldstein, A., and D. L. Brutlag. 1989. Is there a relationship between DNA sequences encoding peptide ligands and their receptors? Proc. Natl. Acad. Sci. USA 86:42-45.
13. Hayashi, F., K. D. Smith, A. Ozinsky, T. R. Hawn, E. C. Yi, D. R. Goodlett, J. K. Eng, S. Akira, D. M. Underhill, and A. Aderem. 2001. The innate immune response to bacterial flagellin is mediated by Toll-like receptor 5. Nature 410:1099-1103.
14. Heal, J. R., G. W. Roberts, J. G. Raynes, A. Bhakoo, and A. D. Miller. 2002. Specific interactions between sense and complementary peptides: the basis for the proteomic code. ChemBioChem 3:136-151.
15. Jacchieri, S. G. 1997. Conformational analysis of polypeptide chains with the aid of density of states calculations. Int. J. Quant. Chem. 65:1115-1124.
16. Jacchieri, S. G. 2001. Stepwise assembling of polypeptide chain energy distributions. Comput. Chem. 25:145-159.
17. Jacchieri, S. G., M. D. Gomes, L. Juliano, and A. C. Camargo. 1998. A comparative conformational analysis of thimet oligopeptidase (EC 3.4.24.15) substrates. J. Pept. Res. 51:452-459.
18. Jacchieri, S. G., and A. S. Ito. 1995. Characterization of structural transitions from aqueous solution to a lipid phase for α-MSH. Int. J. Quant. Chem. 53:335-341.
19. Knauper, V., A. J. Docherty, B. Smith, H. Tschesche, and G. Murphy. 1997. Analysis of the contribution of the hinge region of human neutrophil collagenase (HNC, MMP-8) to stability and collagenolytic activity by alanine scanning mutagenesis. FEBS Lett. 405:60-64.
20. Kyte, J., and R. F. Doolittle. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132.
21. Martins, V. R., E. Graner, J. Garcia-Abreu, S. J. de Souza, A. F. Mercadante, S. S. Veiga, S. M. Zanata, V. M. Neto, and R. R. Brentani. 1997. Complementary hydropathy identifies a cellular prion protein receptor. Nat. Med. 3:1376-1382.
22. Ohide, A., H. Ando, T. Yanagisawa, and A. Urano. 1996. Hydropathy profiles of predicted thyrotropin-releasing hormone precursors are highly conserved despite low similarity of primary structures. J. Neuroendocrinol. 8:695-701.
23. Ponder, J. W., and F. M. Richards. 1987. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes. J. Mol. Biol. 193:775-791.
24. Ritchie, D. W., and G. J. Kemp. 2000. Protein docking using spherical polar Fourier correlations. Proteins 39:178-194.
25. Root-Bernstein, R. S., and D. D. Holsworth. 1998. Antisense peptides: a critical mini-review. J. Theor. Biol. 190:107-119.
26. Samatey, F. A., K. Imada, S. Nagashima, F. Vonderviszt, T. Kumasaka, M. Yamamoto, and K. Namba. 2001. Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling. Nature 410:321-322.
27. Sanchez-Campillo, M., S. Dramsi, J. M. Gomez-Gomez, E. Michel, P. Dehoux, P. Cossart, F. Baquero, and J. C. Perez-Diaz. 1995. Modulation of DNA topology by flaR, a new gene from Listeria monocytogenes. Mol. Microbiol. 18:801-811.
28. Souza, S. J., and R. Brentani. 1992. Collagen binding site in collagenase can be determined using the concept of sense-antisense peptide interactions. J. Biol. Chem. 267:13763-13767.
29. Steiner, T. S., J. P. Nataro, C. E. Poteet-Smith, J. A. Smith, and R. L. Guerrant. 2000. Enteroaggregative Escherichia coli expresses a novel flagellin that causes IL-8 release from intestinal epithelial cells. J. Clin. Investig. 105:1769-1777.
30. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
31. Totten, P. A., and S. Lory. 1990. Characterization of the type a flagellin gene from Pseudomonas aeruginosa PAK. J. Bacteriol. 172:7188-7199.
32. Vriend, G. 1990. WHAT IF: a molecular modeling and drug design program. J. Mol. Graph. 8:52-56.
33. Xu, Y., X. Tao, B. Shen, T. Horng, R. Medzhitov, J. L. Manley, and L. Tong. 2000. Structural basis for signal transduction by the Toll/interleukin-1 receptor domains. Nature 408:111-115.
34. Zanata, S. M., M. H. Lopes, A. F. Mercadante, G. N. Hajj, L. B. Chiarini, R. Nomizo, A. R. Freitas, A. L. Cabral, K. S. Lee, M. A. Juliano, E. de Oliveira, S. G. Jachieri, A. Burlingame, L. Huang, R. Linden, R. R. Brentani, and V. R. Martins. 2002. Stress-inducible protein 1 is a cell surface ligand for cellular prion that triggers neuroprotection. EMBO. J. 21:3307-3316.
35. Zimmerman, S. S., M. S. Pottle, G. Nemethy, and H. Scheraga. 1977. Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP. Macromolecules 10:1-9.