메뉴 건너뛰기




Volumn 9, Issue 2, 2003, Pages 86-100

High-throughput epidemiologic typing in clinical microbiology

Author keywords

156110 RFLP; Genome sequences; MLST; Molecular typing; Networks

Indexed keywords

NUCLEOTIDE;

EID: 0038414878     PISSN: 1198743X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1469-0691.2003.00549.x     Document Type: Review
Times cited : (50)

References (142)
  • 1
    • 0034069482 scopus 로고    scopus 로고
    • Strain, clone and species: Comments on three basic concepts of bacteriology
    • Dijkshoorn L, Ursing BM, Ursing JB. Strain, clone and species: comments on three basic concepts of bacteriology. J Med Microbiol 2000; 49: 397-401.
    • (2000) J. Med. Microbiol. , vol.49 , pp. 397-401
    • Dijkshoorn, L.1    Ursing, B.M.2    Ursing, J.B.3
  • 2
    • 0035448522 scopus 로고    scopus 로고
    • When does a clone deserve a name? A perspective on bacterial species based on population genetics
    • Lan R, Reeves PR. When does a clone deserve a name? A perspective on bacterial species based on population genetics. Trends Microbiol 2001;9:419-24.
    • (2001) Trends Microbiol. , vol.9 , pp. 419-424
    • Lan, R.1    Reeves, P.R.2
  • 3
    • 0032145873 scopus 로고    scopus 로고
    • Beyond strain typing and molecular epidemiology: Integrated genetic epidemiology of infectious diseases
    • Tibayrenc M. Beyond strain typing and molecular epidemiology: integrated genetic epidemiology of infectious diseases. Parasitol Today 1998; 14: 323-9.
    • (1998) Parasitol. Today , vol.14 , pp. 323-329
    • Tibayrenc, M.1
  • 5
    • 17044458598 scopus 로고
    • Studies of enterotoxin production by strains of Staphylococcus aureus of different origins
    • Mochmann H, Richter U, Karsch W, Witte W, Meyer W. Studies of enterotoxin production by strains of Staphylococcus aureus of different origins. Zentralbl Bakteriol 1976; 234: 434-49.
    • (1976) Zentralbl. Bakteriol. , vol.234 , pp. 434-449
    • Mochmann, H.1    Richter, U.2    Karsch, W.3    Witte, W.4    Meyer, W.5
  • 6
    • 0036196159 scopus 로고    scopus 로고
    • Identification of Campylobacter heat-stable and heat-labile antigens by combining the Penner and Lior serotyping schemes
    • Woodward DL, Rodgers FG. Identification of Campylobacter heat-stable and heat-labile antigens by combining the Penner and Lior serotyping schemes. J Clin Microbiol 2002; 40: 741-5.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 741-745
    • Woodward, D.L.1    Rodgers, F.G.2
  • 7
    • 0037016699 scopus 로고    scopus 로고
    • The genetic bases for the variation in the lipo-oligosaccharide of the mucosal pathogen Campylobacter jejuni. Biosynthesis of sialylated ganglioside mimics in the core oligosaccharide
    • Gilbert M, Karwaski MF, Bernatchez S et al. The genetic bases for the variation in the lipo-oligosaccharide of the mucosal pathogen Campylobacter jejuni. Biosynthesis of sialylated ganglioside mimics in the core oligosaccharide. J Biol Chem 2002; 277: 327-37.
    • (2002) J. Biol. Chem. , vol.277 , pp. 327-337
    • Gilbert, M.1    Karwaski, M.F.2    Bernatchez, S.3
  • 8
    • 0032130471 scopus 로고    scopus 로고
    • Comparative and library epidemiological typing systems: Outbreak investigations versus surveillance systems
    • Struelens MJ, De Gheldre Y, Deplano A. Comparative and library epidemiological typing systems: outbreak investigations versus surveillance systems. Infect Control Hosp Epidemiol 1998; 19: 565-9.
    • (1998) Infect. Control Hosp. Epidemiol. , vol.19 , pp. 565-569
    • Struelens, M.J.1    De Gheldre, Y.2    Deplano, A.3
  • 9
    • 0033636077 scopus 로고    scopus 로고
    • The molecular epidemiology of nosocomial infection: Past, present and future
    • Goering RV. The molecular epidemiology of nosocomial infection: past, present and future. Rev Med Microbiol 2000; 11: 145-52.
    • (2000) Rev. Med. Microbiol. , vol.11 , pp. 145-152
    • Goering, R.V.1
  • 10
    • 0028470646 scopus 로고
    • Usefulness of molecular epidemiology for outbreak investigation
    • Jarvis WR. Usefulness of molecular epidemiology for outbreak investigation. Infect Control Hosp Epidemiol 1994; 15: 500-3.
    • (1994) Infect. Control Hosp. Epidemiol. , vol.15 , pp. 500-503
    • Jarvis, W.R.1
  • 11
    • 0028470741 scopus 로고
    • Applications of molecular methods to epidemiologic investigations of nosocomial infections in a paediatric hospital
    • Bingen E. Applications of molecular methods to epidemiologic investigations of nosocomial infections in a paediatric hospital. Infect Control Hosp Epidemiol 1994; 14: 488-93.
    • (1994) Infect. Control Hosp. Epidemiol. , vol.14 , pp. 488-493
    • Bingen, E.1
  • 13
    • 20544465875 scopus 로고    scopus 로고
    • Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems
    • the members of the European Study Group for Epidemiological Markers (ESGEM) of the European Society for Clinical Microbiology and Infectious Diseases (ESCMID)
    • Struelens MJ, the members of the European Study Group for Epidemiological Markers (ESGEM) of the European Society for Clinical Microbiology and Infectious Diseases (ESCMID). Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems. Clin Microbiol Infect 1996; 2: 2-11.
    • (1996) Clin. Microbiol. Infect. , vol.2 , pp. 2-11
    • Struelens, M.J.1
  • 14
    • 0031156837 scopus 로고    scopus 로고
    • How to select and interpret molecular typing methods for epidemiological studies of bacterial infections: A review for healthcare epidemiologists
    • the Molecular Typing Working Group of the Society for Healthcare Epidemiology of America
    • Tenover FC, Arbeit RD, Goering RV, the Molecular Typing Working Group of the Society for Healthcare Epidemiology of America. How to select and interpret molecular typing methods for epidemiological studies of bacterial infections: a review for healthcare epidemiologists. Infect Control Hosp Epidemiol 1997; 18: 426-39.
    • (1997) Infect. Control Hosp. Epidemiol. , vol.18 , pp. 426-439
    • Tenover, F.C.1    Arbeit, R.D.2    Goering, R.V.3
  • 16
    • 0028314370 scopus 로고
    • DNA fingerprinting of medically important microorganisms by use of PCR
    • Van Belkum A. DNA fingerprinting of medically important microorganisms by use of PCR. Clin Microbiol Rev 1994; 7: 174-84.
    • (1994) Clin. Microbiol. Rev. , vol.7 , pp. 174-184
    • Van Belkum, A.1
  • 17
    • 0030253664 scopus 로고    scopus 로고
    • DNA fingerprinting techniques for microorganisms: A proposal for classification and nomenclature
    • Vaneechoutte M. DNA fingerprinting techniques for microorganisms: a proposal for classification and nomenclature. Mol Biotechnol 1996; 6: 115-42.
    • (1996) Mol. Biotechnol. , vol.6 , pp. 115-142
    • Vaneechoutte, M.1
  • 18
    • 0000571288 scopus 로고    scopus 로고
    • Microbial genome sequencing: A window into evolution and physiology
    • Nelson KE, Paulsen IT, Fraser CM. Microbial genome sequencing: a window into evolution and physiology. ASM News 2001; 67: 310-17.
    • (2001) ASM News , vol.67 , pp. 310-317
    • Nelson, K.E.1    Paulsen, I.T.2    Fraser, C.M.3
  • 19
    • 0032878117 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism analysis: The state of an art
    • Savelkoul PHM, Aarts HJM, De Haas J et al. Amplified fragment length polymorphism analysis: the state of an art. J Clin Microbiol 1999; 37: 3083-91.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 3083-3091
    • Savelkoul, P.H.M.1    Aarts, H.J.M.2    De Haas, J.3
  • 20
    • 0034625235 scopus 로고    scopus 로고
    • The impact of comparative genomics on our understanding of evolution
    • Koonin EV, Aravind L, Kondrashov AS. The impact of comparative genomics on our understanding of evolution. Cell 2000; 101: 573-6.
    • (2000) Cell , vol.101 , pp. 573-576
    • Koonin, E.V.1    Aravind, L.2    Kondrashov, A.S.3
  • 22
    • 0036165258 scopus 로고    scopus 로고
    • Functional and comparative genomics of pathogenic bacteria
    • Schoolnik GK. Functional and comparative genomics of pathogenic bacteria. Curr Opin Microbiol 2002; 5: 20-6.
    • (2002) Curr. Opin. Microbiol. , vol.5 , pp. 20-26
    • Schoolnik, G.K.1
  • 24
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H, Lawrence JG, Groisman EA. Lateral gene transfer and the nature of bacterial innovation. Nature 2000; 405: 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 25
    • 0028006404 scopus 로고
    • Comparison of traditional and molecular methods of typing isolates of Staphylococcus aureus
    • Tenover FC, Arbeit R, Archer G et al. Comparison of traditional and molecular methods of typing isolates of Staphylococcus aureus. J Clin Microbiol 1994; 32: 407-15.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 407-415
    • Tenover, F.C.1    Arbeit, R.2    Archer, G.3
  • 26
    • 0029042439 scopus 로고
    • Multicenter evaluation of arbitrarily primed PCR for typing of Staphylococcus aureus strains
    • Van Belkum A, Kluytmans J, Van Leeuwen W et al. Multicenter evaluation of arbitrarily primed PCR for typing of Staphylococcus aureus strains. J Clin Microbiol 1995; 33: 1537-47.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 1537-1547
    • Van Belkum, A.1    Kluytmans, J.2    Van Leeuwen, W.3
  • 27
    • 0032955354 scopus 로고    scopus 로고
    • Molecular genotyping of Staphylococcus aureus strains: Comparison of repetitive element sequence based PCR with various typing methods and isolation of a novel epidemicity marker
    • Van der Zee A, Verbakel H, Van Zon J et al. Molecular genotyping of Staphylococcus aureus strains: comparison of repetitive element sequence based PCR with various typing methods and isolation of a novel epidemicity marker. J Clin Microbiol 1999; 37: 342-9.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 342-349
    • Van der Zee, A.1    Verbakel, H.2    Van Zon, J.3
  • 28
    • 0033770574 scopus 로고    scopus 로고
    • Multi-center evaluation of epidemiological typing of methicillin-resistant Staphylococcus aureus strains by repetitive element PCR analysis
    • Deplano A, Schuermans A, Van Eldere J et al. Multi-center evaluation of epidemiological typing of methicillin-resistant Staphylococcus aureus strains by repetitive element PCR analysis. J Clin Microbiol 2000; 38: 3527-33.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3527-3533
    • Deplano, A.1    Schuermans, A.2    Van Eldere, J.3
  • 29
    • 0029881682 scopus 로고    scopus 로고
    • Inter-centre comparison of pulsed field gel electrophoresis for the typing of methicillin resistant Staphylococcus aureus
    • Cookson BD, Aparicio P, Deplano A, Struelens M, Goering RV, Marples R. Inter-centre comparison of pulsed field gel electrophoresis for the typing of methicillin resistant Staphylococcus aureus. J Med Microbiol 1996; 44: 179-84.
    • (1996) J. Med. Microbiol. , vol.44 , pp. 179-184
    • Cookson, B.D.1    Aparicio, P.2    Deplano, A.3    Struelens, M.4    Goering, R.V.5    Marples, R.6
  • 30
    • 0031968574 scopus 로고    scopus 로고
    • Assessment of resolution and inter-centre reproducibility of results of genotyping Staphylococcus aureus by pulsed field gel electrophoresis of SmaI macrorestriction fragments: A multi-centre study
    • Van Belkum A, Van Leeuwen W, Kaufman ME et al. Assessment of resolution and inter-centre reproducibility of results of genotyping Staphylococcus aureus by pulsed field gel electrophoresis of SmaI macrorestriction fragments: a multi-centre study. J Clin Microbiol 1998; 36: 1653-9.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 1653-1659
    • Van Belkum, A.1    Van Leeuwen, W.2    Kaufman, M.E.3
  • 31
    • 0029738483 scopus 로고    scopus 로고
    • Testing the efficacy of a molecular surveillance network: Methicillin resistant Staphylococcus aureus (MRSA) and vancomycin resistant Enterococcus faecium (VREF) genotypes in six hospitals in the metropolitan New York city area
    • De Lencastre H, Severina EP, Roberts RB, Kreiswirth B, Tomasz A. Testing the efficacy of a molecular surveillance network: methicillin resistant Staphylococcus aureus (MRSA) and vancomycin resistant Enterococcus faecium (VREF) genotypes in six hospitals in the metropolitan New York city area. Microb Drug Resist 1996; 2: 343-51.
    • (1996) Microb. Drug Resist. , vol.2 , pp. 343-351
    • De Lencastre, H.1    Severina, E.P.2    Roberts, R.B.3    Kreiswirth, B.4    Tomasz, A.5
  • 32
    • 0036194671 scopus 로고    scopus 로고
    • Reproducibility of Bordetella pertussis genomic DNA fragments generated by XbaI restriction and resolved by pulsed-field gel electrophoresis
    • Hardwick TH, Plikaytis B, Cassiday PK et al. Reproducibility of Bordetella pertussis genomic DNA fragments generated by XbaI restriction and resolved by pulsed-field gel electrophoresis. J Clin Microbiol 2002; 40: 811-16.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 811-816
    • Hardwick, T.H.1    Plikaytis, B.2    Cassiday, P.K.3
  • 33
    • 0029794733 scopus 로고    scopus 로고
    • Rapid preparation of bacterial DNA for pulsed field gel electrophoresis
    • Matushek MG, Bonten MJM, Hayden MK. Rapid preparation of bacterial DNA for pulsed field gel electrophoresis. J Clin Microbiol 1996; 34: 2598-600.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 2598-2600
    • Matushek, M.G.1    Bonten, M.J.M.2    Hayden, M.K.3
  • 34
    • 0035477673 scopus 로고    scopus 로고
    • The emergence and evolution of methicillin resistant Stapylococcus aureus
    • Hiramatsu K, Cui L, Kuroda M, Ito T. The emergence and evolution of methicillin resistant Stapylococcus aureus. Trends Microbiol 2001; 9: 486-93.
    • (2001) Trends Microbiol. , vol.9 , pp. 486-493
    • Hiramatsu, K.1    Cui, L.2    Kuroda, M.3    Ito, T.4
  • 36
    • 0032126227 scopus 로고    scopus 로고
    • Genetic diversification of methicillin resistant Staphylococcus aureus as a function of prolonged geographic dissemination and as measured by binary typing and other genotyping methods
    • Van Leeuwen W, Van Belkum A, Kreiswirth B, Verbrugh HA. Genetic diversification of methicillin resistant Staphylococcus aureus as a function of prolonged geographic dissemination and as measured by binary typing and other genotyping methods. Res Microbiol 1998; 149: 497-507.
    • (1998) Res. Microbiol. , vol.149 , pp. 497-507
    • Van Leeuwen, W.1    Van Belkum, A.2    Kreiswirth, B.3    Verbrugh, H.A.4
  • 38
    • 0034062216 scopus 로고    scopus 로고
    • Application of pulsed field gel electrophoresis and binary typing as tools in veterinary clinical microbiology and molecular epidemiologic analysis of bovine and human Staphylococcus aureus isolates
    • Zadoks R, Van Leeuwen W, Barkema H et al. Application of pulsed field gel electrophoresis and binary typing as tools in veterinary clinical microbiology and molecular epidemiologic analysis of bovine and human Staphylococcus aureus isolates. J Clin Microbiol 2000; 38: 1931-9.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1931-1939
    • Zadoks, R.1    Van Leeuwen, W.2    Barkema, H.3
  • 40
    • 0035162225 scopus 로고    scopus 로고
    • Binary typing of Staphylococcus aureus strains through reversed hybridisation using digoxygenin-universal linkage system-labelled bacterial genomic DNA
    • Van Leeuwen W, Libregts C, Schalk M, Veuskens J, Verbrugh HA, Van Belkum A. Binary typing of Staphylococcus aureus strains through reversed hybridisation using digoxygenin-universal linkage system-labelled bacterial genomic DNA. J Clin Microbiol 2001; 39: 328-31.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 328-331
    • Van Leeuwen, W.1    Libregts, C.2    Schalk, M.3    Veuskens, J.4    Verbrugh, H.A.5    Van Belkum, A.6
  • 42
    • 0034005677 scopus 로고    scopus 로고
    • Multilocus sequence typing for characterisation of methicillin resistant and methicillin susceptible clones of Staphylococcus aureus
    • Enright MC, Day NPJ, Davies CE, Peacock SJ, Spratt BG. Multilocus sequence typing for characterisation of methicillin resistant and methicillin susceptible clones of Staphylococcus aureus. J Clin Microbiol 2000; 38: 1008-15.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1008-1015
    • Enright, M.C.1    Day, N.P.J.2    Davies, C.E.3    Peacock, S.J.4    Spratt, B.G.5
  • 43
    • 0035815374 scopus 로고    scopus 로고
    • A link between virulence and ecological abundance in natural populations of Staphylococcus aureus
    • Day NP, Moore CE, Enright MC et al. A link between virulence and ecological abundance in natural populations of Staphylococcus aureus. Science 2001; 292: 114-16.
    • (2001) Science , vol.292 , pp. 114-116
    • Day, N.P.1    Moore, C.E.2    Enright, M.C.3
  • 45
    • 0034616912 scopus 로고    scopus 로고
    • Biomedical discoveries with DNA arrays
    • Young RA. Biomedical discoveries with DNA arrays. Cell 2000; 102: 9-15.
    • (2000) Cell , vol.102 , pp. 9-15
    • Young, R.A.1
  • 46
    • 0031962882 scopus 로고    scopus 로고
    • DNA chips: An array of possibilities
    • Marshall A, Hodgson J. DNA chips: an array of possibilities. Nature Biotechnol 1998; 16: 27-31.
    • (1998) Nature Biotechnol. , vol.16 , pp. 27-31
    • Marshall, A.1    Hodgson, J.2
  • 47
    • 0024996960 scopus 로고
    • Characterisation of a Mycobacterium tuberculosis insertion sequence belonging to the IS3 family
    • McAdam RA, Hermans; PWM, Van Soolingen D et al. Characterisation of a Mycobacterium tuberculosis insertion sequence belonging to the IS3 family. Mol Microbial 1990; 4: 1607-13.
    • (1990) Mol. Microbial. , vol.4 , pp. 1607-1613
    • McAdam, R.A.1    Hermans, P.W.M.2    Van Soolingen, D.3
  • 48
    • 0025063966 scopus 로고
    • IS6110, an IS-like element of Mycobacterium tuberculosis complex
    • Thierry D, Cave MD, Eisenach KD et al. IS6110, an IS-like element of Mycobacterium tuberculosis complex. Nucleic Acids Res 1990; 18: 188.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 188
    • Thierry, D.1    Cave, M.D.2    Eisenach, K.D.3
  • 49
    • 0025045139 scopus 로고
    • Insertion element IS986 from Mycobacterium tuberculosis: A useful tool for diagnosis and epidemiology of tuberculosis
    • Hermans PWM, Van Soolingen D, Dale JW et al. Insertion element IS986 from Mycobacterium tuberculosis: a useful tool for diagnosis and epidemiology of tuberculosis. J Clin Microbiol 1990; 28: 2051-8.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 2051-2058
    • Hermans, P.W.M.1    Van Soolingen, D.2    Dale, J.W.3
  • 50
    • 0027498478 scopus 로고
    • Strain identification of Mycobacterium tuberculosis complex strains: Recommendations for a standardised methodology
    • Van Embden JDA, Cave MD, Crawford JT et al. Strain identification of Mycobacterium tuberculosis complex strains: recommendations for a standardised methodology. J Clin Microbiol 1993; 31: 406-9.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 406-409
    • Van Embden, J.D.A.1    Cave, M.D.2    Crawford, J.T.3
  • 51
    • 0028838407 scopus 로고
    • Predominance of a single clone of Mycobacterium tuberculosis in countries of East Asia
    • Van Soolingen D, Qian L, De Haas PE et al. Predominance of a single clone of Mycobacterium tuberculosis in countries of East Asia. J Clin Microbiol 1995; 33: 3234-8.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 3234-3238
    • Van Soolingen, D.1    Qian, L.2    De Haas, P.E.3
  • 52
    • 0032780218 scopus 로고    scopus 로고
    • Discrimination of multi-drug resistant Mycobacterium tuberculosis IS6110 fingerprint sub-clusters by rpoB gene mutations
    • Portugal I, Maia S, Moniz-Pereira J. Discrimination of multi-drug resistant Mycobacterium tuberculosis IS6110 fingerprint sub-clusters by rpoB gene mutations. J Clin Microbiol 1999; 37: 3022-4.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 3022-3024
    • Portugal, I.1    Maia, S.2    Moniz-Pereira, J.3
  • 54
    • 33746408222 scopus 로고    scopus 로고
    • The application of molecular techniques to the diagnosis and epidemiology of mycobacterial diseases
    • Butcher PD, Hutchinson NA, Doran TJ, Dale JW. The application of molecular techniques to the diagnosis and epidemiology of mycobacterial diseases. J Appl Bacteriol 1996; 81: 53S-71S.
    • (1996) J. Appl. Bacteriol. , vol.81
    • Butcher, P.D.1    Hutchinson, N.A.2    Doran, T.J.3    Dale, J.W.4
  • 55
    • 0031978296 scopus 로고    scopus 로고
    • Nonrandom association of IS6110 and Mycobacterium tuberculosis: Implications for molecular epidemiological studies
    • McHugh TD, Gillespie SH. Nonrandom association of IS6110 and Mycobacterium tuberculosis: implications for molecular epidemiological studies. J Clin Microbiol 1998; 36: 1410-13.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 1410-1413
    • McHugh, T.D.1    Gillespie, S.H.2
  • 56
    • 0030931719 scopus 로고    scopus 로고
    • Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionary recent global dissemination
    • Sreevatsan S, Pan X, Stockbauer KE et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionary recent global dissemination. Proc Natl Acad Sci USA 1997; 94: 9869-74.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9869-9874
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.E.3
  • 57
    • 0035053858 scopus 로고    scopus 로고
    • Comparing genomes within the species Mycobacterium tuberculosis
    • Kato-Maeda M, Rhee JT, Gingeras TR et al. Comparing genomes within the species Mycobacterium tuberculosis. Genome Res 2001; 11: 547-54.
    • (2001) Genome Res. , vol.11 , pp. 547-554
    • Kato-Maeda, M.1    Rhee, J.T.2    Gingeras, T.R.3
  • 59
    • 0034796701 scopus 로고    scopus 로고
    • Automated high throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units
    • Supply P, Lesjean S, Savine E, Kremer K, Van Soolingen D, Locht C. Automated high throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 2001; 39: 3563-71.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3563-3571
    • Supply, P.1    Lesjean, S.2    Savine, E.3    Kremer, K.4    Van Soolingen, D.5    Locht, C.6
  • 60
    • 0034962826 scopus 로고    scopus 로고
    • Comparison of variable number of tandem repeat and IS6110-restriction fragment length polymorphism analyses for discrimination of high- and low-copy-number IS6110 Mycobacterium tuberculosis isolates
    • Barlow REL, Gascoyne-Binzi DM, Gillespie SH, Dickens A, Qamer S, Hawkey PM. Comparison of variable number of tandem repeat and IS6110-restriction fragment length polymorphism analyses for discrimination of high- and low-copy-number IS6110 Mycobacterium tuberculosis isolates. J Clin Microbiol 2001; 39: 2453-7.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 2453-2457
    • Barlow, R.E.L.1    Gascoyne-Binzi, D.M.2    Gillespie, S.H.3    Dickens, A.4    Qamer, S.5    Hawkey, P.M.6
  • 61
    • 0034461141 scopus 로고    scopus 로고
    • Variable number of TTC repeats in Mycobacterium leprae DNA from leprosy patients and use in strain differentiation
    • Shin Y, Lee H, Lee H, Walsh GP, Kim J, Cho S. Variable number of TTC repeats in Mycobacterium leprae DNA from leprosy patients and use in strain differentiation. J Clin Microbiol 2000; 38: 4535-8.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 4535-4538
    • Shin, Y.1    Lee, H.2    Lee, H.3    Walsh, G.P.4    Kim, J.5    Cho, S.6
  • 62
    • 0025826178 scopus 로고
    • The insertion element IS987 from Mycobacterium bovis BCG is located in a hotspot integration region for insertion elements in Mycobacterium tuberculosis complex strains
    • Hermans PWM, Van Soolingen D, Bik EM, De Haas PEW, Dale JW, Van Embden JDA. The insertion element IS987 from Mycobacterium bovis BCG is located in a hotspot integration region for insertion elements in Mycobacterium tuberculosis complex strains. Infect Immun 1991; 59: 2695-705.
    • (1991) Infect. Immun. , vol.59 , pp. 2695-2705
    • Hermans, P.W.M.1    Van Soolingen, D.2    Bik, E.M.3    De Haas, P.E.W.4    Dale, J.W.5    Van Embden, J.D.A.6
  • 63
    • 0027724480 scopus 로고
    • Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel method
    • Groenen PMA, Bunschoten EA, Van Soolingen D, Van Embden JDA. Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel method. Mol Microbiol 1993; 105: 1057-65.
    • (1993) Mol. Microbiol. , vol.105 , pp. 1057-1065
    • Groenen, P.M.A.1    Bunschoten, E.A.2    Van Soolingen, D.3    Van Embden, J.D.A.4
  • 64
  • 65
    • 0030911908 scopus 로고    scopus 로고
    • Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
    • Kamerbeek J, Schouls L, Kolk A et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997; 35: 907-14.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 907-914
    • Kamerbeek, J.1    Schouls, L.2    Kolk, A.3
  • 66
    • 0032802792 scopus 로고    scopus 로고
    • Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: Interlaboratory study of discriminatory power and reproducibility
    • Kremer K, Van Soolingen D, Frothingham R et al. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J Clin Microbiol 1999; 37: 2607-18.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 2607-2618
    • Kremer, K.1    Van Soolingen, D.2    Frothingham, R.3
  • 67
    • 0032956681 scopus 로고    scopus 로고
    • Mycobacterium species identification and rifampin resistance testing with high density DNA probe arrays
    • Troesch A, Nguyen H, Miyada CG et al. Mycobacterium species identification and rifampin resistance testing with high density DNA probe arrays. J Clin Microbiol 1999; 37: 49-55.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 49-55
    • Troesch, A.1    Nguyen, H.2    Miyada, C.G.3
  • 69
    • 0028673956 scopus 로고
    • DNA fingerprinting of Neisseria strains by rep-PCR
    • Versalovic J, Lupski JR. DNA fingerprinting of Neisseria strains by rep-PCR. Methods Mol Cell Biol 1995; 5: 96-104.
    • (1995) Methods Mol. Cell Biol. , vol.5 , pp. 96-104
    • Versalovic, J.1    Lupski, J.R.2
  • 70
    • 0031886483 scopus 로고    scopus 로고
    • Sequence diversity, predicted two-dimensional protein structure and epitope mapping of neisserial opa proteins
    • Malorny B, Morelli G, Kusecek B, Kolberg J, Achtman M. Sequence diversity, predicted two-dimensional protein structure and epitope mapping of neisserial opa proteins. J Bacteriol 1998; 180: 1323-30.
    • (1998) J. Bacteriol. , vol.180 , pp. 1323-1330
    • Malorny, B.1    Morelli, G.2    Kusecek, B.3    Kolberg, J.4    Achtman, M.5
  • 71
    • 0034732226 scopus 로고    scopus 로고
    • Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491
    • Parkhill J, Achtman M, James KD et al. Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491. Nature 2000; 404: 502-6.
    • (2000) Nature , vol.404 , pp. 502-506
    • Parkhill, J.1    Achtman, M.2    James, K.D.3
  • 73
    • 0033152417 scopus 로고    scopus 로고
    • Multilocus sequence typing: Molecular typing of bacterial pathogens in an era of rapid DNA sequencing and the Internet
    • Spratt BG. Multilocus sequence typing: molecular typing of bacterial pathogens in an era of rapid DNA sequencing and the Internet. Curr Opin Microbiol 1999; 2: 312-16.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 312-316
    • Spratt, B.G.1
  • 74
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
    • Maiden MCJ, Bygraves JA, Feil E et al. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 1998; 95: 3140-5.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3140-3145
    • Maiden, M.C.J.1    Bygraves, J.A.2    Feil, E.3
  • 75
    • 0032729330 scopus 로고    scopus 로고
    • Multilocus sequence typing and antigen gene sequencing in the investigation of a meningococcal disease outbreak
    • Feavers IM, Gray SJ, Urwin R et al. Multilocus sequence typing and antigen gene sequencing in the investigation of a meningococcal disease outbreak. J Clin Microbiol 1999; 37: 3883-7.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 3883-3887
    • Feavers, I.M.1    Gray, S.J.2    Urwin, R.3
  • 77
    • 0001561897 scopus 로고
    • Population genetics and global epidemiology of the human pathogen Neisseria meningitidis
    • Baumberg S, Young JPW, Wellington EMH, Saunders JH, eds. Cambridge: Cambridge University Press
    • Maiden MCJ, Feavers IM. Population genetics and global epidemiology of the human pathogen Neisseria meningitidis. In: Baumberg S, Young JPW, Wellington EMH, Saunders JH, eds. The population genetics of bacteria. Cambridge: Cambridge University Press, 1995: 269-93.
    • (1995) The Population Genetics of Bacteria , pp. 269-293
    • Maiden, M.C.J.1    Feavers, I.M.2
  • 78
    • 0035793056 scopus 로고    scopus 로고
    • Recombination within natural populations of pathogenic bacteria: Short term empirical estimates and long term phylogenetic consequences
    • Feil EJ, Holmes EC, Bessen DE et al. Recombination within natural populations of pathogenic bacteria: short term empirical estimates and long term phylogenetic consequences. Proc Natl Acad Sci USA 2001; 98: 182-7.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 182-187
    • Feil, E.J.1    Holmes, E.C.2    Bessen, D.E.3
  • 80
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity
    • Hunter PR, Gaston MA. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 1988; 26: 2465-6.
    • (1988) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 81
    • 0025063184 scopus 로고
    • Reproducibility and indices of discriminatory power of microbial typing methods
    • Hunter PR. Reproducibility and indices of discriminatory power of microbial typing methods. J Clin Microbiol 1990; 28: 1903-5.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 1903-1905
    • Hunter, P.R.1
  • 82
    • 0034757959 scopus 로고    scopus 로고
    • Determining confidence intervals when measuring genetic diversity and the discriminatory ability of typing methods for microorganisms
    • Grundmann H, Hori S, Tanner G. Determining confidence intervals when measuring genetic diversity and the discriminatory ability of typing methods for microorganisms. J Clin Microbiol 2001; 39: 4190-2.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 4190-4192
    • Grundmann, H.1    Hori, S.2    Tanner, G.3
  • 83
    • 0031978085 scopus 로고    scopus 로고
    • Computerised analysis of restriction fragment length polymorphism patterns: Comparative evaluation of two commercial software packages
    • Gerner-Smidt P, Graves LM, Hunter S, Swaminathan B. Computerised analysis of restriction fragment length polymorphism patterns: comparative evaluation of two commercial software packages. J Clin Microbiol 1998; 36: 1318-23.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 1318-1323
    • Gerner-Smidt, P.1    Graves, L.M.2    Hunter, S.3    Swaminathan, B.4
  • 84
    • 0033062184 scopus 로고    scopus 로고
    • Critical observations on computerised analysis of banding patterns with commercial software packages
    • Cardinali G, Martini A, Tascini C, Bistoni F. Critical observations on computerised analysis of banding patterns with commercial software packages. J Clin Microbiol 1999; 37: 876-7.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 876-877
    • Cardinali, G.1    Martini, A.2    Tascini, C.3    Bistoni, F.4
  • 85
    • 0034834311 scopus 로고    scopus 로고
    • Identification of Mycobacterium species by multiple fluorescence PCR single strand conformation polymorphism analysis of the 16S rRNA gene
    • Gillman LM, Gunton J, Turenne CY, Wolfe J, Kabani AM. Identification of Mycobacterium species by multiple fluorescence PCR single strand conformation polymorphism analysis of the 16S rRNA gene. J Clin Microbiol 2001; 39: 3085-91.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3085-3091
    • Gillman, L.M.1    Gunton, J.2    Turenne, C.Y.3    Wolfe, J.4    Kabani, A.M.5
  • 86
    • 0030446291 scopus 로고    scopus 로고
    • Taxonomic diversity of pseudomonads revealed by computer interpretation of ribotyping data
    • Brosch R, Lefevre M, Grimont F, Grimont P. Taxonomic diversity of pseudomonads revealed by computer interpretation of ribotyping data. Syst Appl Microbiol 1996; 19: 541-55.
    • (1996) Syst. Appl. Microbiol. , vol.19 , pp. 541-555
    • Brosch, R.1    Lefevre, M.2    Grimont, F.3    Grimont, P.4
  • 87
    • 0034021774 scopus 로고    scopus 로고
    • Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping
    • Brisse S, Verduin CM, Milatovic D et al. Distinguishing species of the Burkholderia cepacia complex and Burkholderia gladioli by automated ribotyping. J Clin Microbiol 2000; 38: 1876-84.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1876-1884
    • Brisse, S.1    Verduin, C.M.2    Milatovic, D.3
  • 88
    • 0034777163 scopus 로고    scopus 로고
    • Automated ribotyping and random amplified polymorphic DNA analysis for molecular typing of Salmonella enteritidis and Salmonella typhimurium strains isolated in Italy
    • De Cesare A, Manfreda G, Dambaugh TR, Guerzoni ME, Franchini A. Automated ribotyping and random amplified polymorphic DNA analysis for molecular typing of Salmonella enteritidis and Salmonella typhimurium strains isolated in Italy. J Appl Microbiol 2001; 91: 780-5.
    • (2001) J. Appl. Microbiol. , vol.91 , pp. 780-785
    • De Cesare, A.1    Manfreda, G.2    Dambaugh, T.R.3    Guerzoni, M.E.4    Franchini, A.5
  • 89
    • 0033962701 scopus 로고    scopus 로고
    • Complement resistant Moraxella catarrhalis forms a genetically distinct lineage within the species
    • Verduin CM, Kools-Sijmons M, Van der Plas J et al. Complement resistant Moraxella catarrhalis forms a genetically distinct lineage within the species. FEMS Microbiol Lett 2000; 184: 1-8.
    • (2000) FEMS Microbiol. Lett. , vol.184 , pp. 1-8
    • Verduin, C.M.1    Kools-Sijmons, M.2    Van der Plas, J.3
  • 90
    • 0035208697 scopus 로고    scopus 로고
    • Automated ribotyping provides rapid phylogenetic subgroup affiliation of clinical extra-intestinal pathogenic Escherichia coli strains
    • Clermont O, Cordevant C, Bonacorsi S, Marecat A, Lange M, Bingen E. Automated ribotyping provides rapid phylogenetic subgroup affiliation of clinical extra-intestinal pathogenic Escherichia coli strains. J Clin Microbial 2001; 39: 4549-53.
    • (2001) J. Clin. Microbial. , vol.39 , pp. 4549-4553
    • Clermont, O.1    Cordevant, C.2    Bonacorsi, S.3    Marecat, A.4    Lange, M.5    Bingen, E.6
  • 91
    • 0032869998 scopus 로고    scopus 로고
    • Phenotypic and genotypic typing of food and clinical isolates of Enterobacter sakazakii
    • Nazarowec-White M, Farber JM. Phenotypic and genotypic typing of food and clinical isolates of Enterobacter sakazakii. J Med Microbiol 1999; 48: 559-67.
    • (1999) J. Med. Microbiol. , vol.48 , pp. 559-567
    • Nazarowec-White, M.1    Farber, J.M.2
  • 92
    • 0036181803 scopus 로고    scopus 로고
    • A global emerging disease of Klebsiella pneumoniae liver abscess: Is serotype K1 an important factor for complicated endophtalmitis?
    • Fung CP, Chang FY, Lee SC et al. A global emerging disease of Klebsiella pneumoniae liver abscess: is serotype K1 an important factor for complicated endophtalmitis? Gut 2002; 50: 420-4.
    • (2002) Gut , vol.50 , pp. 420-424
    • Fung, C.P.1    Chang, F.Y.2    Lee, S.C.3
  • 93
    • 0035113253 scopus 로고    scopus 로고
    • Use of automated riboprinter and pulsed field gel electrophoresis for epidemiological studies of invasive Haemophilus influenzae in Taiwan
    • Wang CC, Siu LK, Chen MK et al. Use of automated riboprinter and pulsed field gel electrophoresis for epidemiological studies of invasive Haemophilus influenzae in Taiwan. J Med Microbiol 2001; 50: 277-83.
    • (2001) J. Med. Microbiol. , vol.50 , pp. 277-283
    • Wang, C.C.1    Siu, L.K.2    Chen, M.K.3
  • 94
    • 6744248904 scopus 로고    scopus 로고
    • Two year assessment of pathogen frequency and anti-microbial resistance patterns among organisms isolated from skin and soft tissue infections in Latin American hospitals: Results from the SENTRY anti-microbial surveillance program, 1997-98
    • Sentry Study Group
    • Gales AC, Jones RN, Pfaller MA, Gordon KA, Sader HS. Two year assessment of pathogen frequency and anti-microbial resistance patterns among organisms isolated from skin and soft tissue infections in Latin American hospitals: results from the SENTRY anti-microbial surveillance program, 1997-98. Sentry Study Group. Int J Infect Dis 2000; 4: 75-84.
    • (2000) Int. J. Infect. Dis. , vol.4 , pp. 75-84
    • Gales, A.C.1    Jones, R.N.2    Pfaller, M.A.3    Gordon, K.A.4    Sader, H.S.5
  • 95
    • 0033000581 scopus 로고    scopus 로고
    • Use of automated ribotyping of Austrian Listeria monocytogenes isolates to support epidemiological typing
    • Allerberger F, Fritschel SJ. Use of automated ribotyping of Austrian Listeria monocytogenes isolates to support epidemiological typing. J Microbiol Methods 1999; 35: 237-44.
    • (1999) J. Microbiol. Methods , vol.35 , pp. 237-244
    • Allerberger, F.1    Fritschel, S.J.2
  • 96
    • 0028097236 scopus 로고
    • Laboratory investigation of a multistate food-borne outbreak of Escherichia coli O157: H7 by using pulsed field gel electrophoresis and phage typing
    • Barrett TJ, Lior H, Green JH, KhaKhria R, Wells JG, Bell BP. Laboratory investigation of a multistate food-borne outbreak of Escherichia coli O157: H7 by using pulsed field gel electrophoresis and phage typing. J Clin Microbiol 1994; 32: 3013-17.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 3013-3017
    • Barrett, T.J.1    Lior, H.2    Green, J.H.3    KhaKhria, R.4    Wells, J.G.5    Bell, B.P.6
  • 97
    • 0031001669 scopus 로고    scopus 로고
    • New approaches for detecting and curtailing food-borne microbial infections
    • Stephenson J. New approaches for detecting and curtailing food-borne microbial infections. JAMA 1997; 277: 1337-40.
    • (1997) JAMA , vol.277 , pp. 1337-1340
    • Stephenson, J.1
  • 98
    • 0035843644 scopus 로고    scopus 로고
    • PulseNet standardised protocol for sub-typing Listeria monocytogenes by macrorestriction and pulsed field gel electrophoresis
    • Graves LM, Swaminathan B. PulseNet standardised protocol for sub-typing Listeria monocytogenes by macrorestriction and pulsed field gel electrophoresis. Int J Food Microbiol 2001; 65: 55-62.
    • (2001) Int. J. Food Microbiol. , vol.65 , pp. 55-62
    • Graves, L.M.1    Swaminathan, B.2
  • 100
    • 0035351051 scopus 로고    scopus 로고
    • PulseNet: The molecular sub-typing network for food-borne bacterial disease surveillance, United States
    • The CDC PulseNet Task Force
    • Swaminathan B, Barrett TJ, Hunter SB, Tauxe RV, The CDC PulseNet Task Force. PulseNet: the molecular sub-typing network for food-borne bacterial disease surveillance, United States. Emerg Infect Dis 2001; 7: 382-9.
    • (2001) Emerg. Infect. Dis. , vol.7 , pp. 382-389
    • Swaminathan, B.1    Barrett, T.J.2    Hunter, S.B.3    Tauxe, R.V.4
  • 101
    • 0033514499 scopus 로고    scopus 로고
    • An outbreak of Escherichia coli O157: H7 infection from unpasteurised commercial apple juice
    • Cody SH, Glynn MK, Farrar JA et al. An outbreak of Escherichia coli O157: H7 infection from unpasteurised commercial apple juice. Ann Intern Med 1999; 130: 202-9.
    • (1999) Ann. Intern. Med. , vol.130 , pp. 202-209
    • Cody, S.H.1    Glynn, M.K.2    Farrar, J.A.3
  • 102
    • 0032510865 scopus 로고    scopus 로고
    • Multi State outbreak of Salmonella type agona infections linked to toasted oats cereal-United States, April-May, 1998
    • Centers for Disease Control and Prevention
    • Centers for Disease Control and Prevention. Multi State outbreak of Salmonella type agona infections linked to toasted oats cereal-United States, April-May, 1998. MMWR Morb Mortal Wkly Rep 1998; 47: 462-4.
    • (1998) MMWR Morb. Mortal Wkly. Rep. , vol.47 , pp. 462-464
  • 103
    • 0032567263 scopus 로고    scopus 로고
    • Multi State outbreak of listeriosis-United States, 1998
    • Centers for Disease Control and Prevention
    • Centers for Disease Control and Prevention. Multi State outbreak of listeriosis-United States, 1998. MMWR Morb Mortal Wkly Rep 1998; 47: 462-4.
    • (1998) MMWR Morb. Mortal Wkly. Rep. , vol.47 , pp. 462-464
  • 104
    • 0031944844 scopus 로고    scopus 로고
    • Sequencing microbial genomes-what will it do for microbiology?
    • Jenks PJ. Sequencing microbial genomes-what will it do for microbiology? J Med Microbiol 1998; 47: 375-82.
    • (1998) J. Med. Microbiol. , vol.47 , pp. 375-382
    • Jenks, P.J.1
  • 105
    • 0037059610 scopus 로고    scopus 로고
    • Phage genomics: Small is beautiful
    • Brussow H, Hendrix RW. Phage genomics: small is beautiful. Cell 2002; 108: 13-16.
    • (2002) Cell , vol.108 , pp. 13-16
    • Brussow, H.1    Hendrix, R.W.2
  • 106
    • 0033972854 scopus 로고    scopus 로고
    • Genetic variation: Molecular mechanisms and impact on microbial evolution
    • Arber W. Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol Rev 2000; 24: 1-7.
    • (2000) FEMS Microbiol. Rev. , vol.24 , pp. 1-7
    • Arber, W.1
  • 107
    • 0034659939 scopus 로고    scopus 로고
    • Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWLo20 from USA
    • Shirai M, Hirakawa H, Kimoto M et al. Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWLo20 from USA. Nucleic Acids Res 2000; 12: 2311-14.
    • (2000) Nucleic Acids Res. , vol.12 , pp. 2311-2314
    • Shirai, M.1    Hirakawa, H.2    Kimoto, M.3
  • 108
    • 0033552961 scopus 로고    scopus 로고
    • Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
    • Alm R, Ling L, Moir DT et al. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 1999; 397: 176-80.
    • (1999) Nature , vol.397 , pp. 176-180
    • Alm, R.1    Ling, L.2    Moir, D.T.3
  • 109
    • 0035925904 scopus 로고    scopus 로고
    • Whole genome sequencing of methicillin-resistant Staphylococcus aureus
    • Kuroda M, Ohta T, Uchiyama I et al. Whole genome sequencing of methicillin-resistant Staphylococcus aureus. Lancet 2001; 357: 1225-40.
    • (2001) Lancet , vol.357 , pp. 1225-1240
    • Kuroda, M.1    Ohta, T.2    Uchiyama, I.3
  • 110
    • 0034623668 scopus 로고    scopus 로고
    • Application of genomics and proteomics for identification of bacterial gene products as potential vaccine candidates
    • Chakravarti DN, Fiske MJ, Fletcher LD, Zagursky RJ. Application of genomics and proteomics for identification of bacterial gene products as potential vaccine candidates. Vaccine 2000; 19: 601-12.
    • (2000) Vaccine , vol.19 , pp. 601-612
    • Chakravarti, D.N.1    Fiske, M.J.2    Fletcher, L.D.3    Zagursky, R.J.4
  • 112
    • 0031949028 scopus 로고    scopus 로고
    • Trees within trees: Phylogeny and historical associations
    • Page RDM, Charleston MA. Trees within trees: phylogeny and historical associations. TREE 1998; 13: 356-9.
    • (1998) TREE , vol.13 , pp. 356-359
    • Page, R.D.M.1    Charleston, M.A.2
  • 115
    • 0034671796 scopus 로고    scopus 로고
    • Evolutionary dynamics of full genome content in Escherichia coli
    • Ochman H, Jones IB. Evolutionary dynamics of full genome content in Escherichia coli. EMBO J 2000; 19: 6637-43.
    • (2000) EMBO J. , vol.19 , pp. 6637-6643
    • Ochman, H.1    Jones, I.B.2
  • 116
    • 0035900653 scopus 로고    scopus 로고
    • Reconstructing/deconstructing the earliest eukaryotes: How comparative genomics can help
    • Dacks JB, Ford Doolittle W. Reconstructing/deconstructing the earliest eukaryotes: how comparative genomics can help. Cell 2001; 107: 419-25.
    • (2001) Cell , vol.107 , pp. 419-425
    • Dacks, J.B.1    Ford Doolittle, W.2
  • 117
    • 0034038128 scopus 로고    scopus 로고
    • Genetic variability within Helicobacter pylori
    • Suerbaum S. Genetic variability within Helicobacter pylori. Int J Med Microbiol 2000; 290: 175-81.
    • (2000) Int. J. Med. Microbiol. , vol.290 , pp. 175-181
    • Suerbaum, S.1
  • 120
    • 0030862610 scopus 로고    scopus 로고
    • Gastrogenomic delights: A movablefeast
    • Eisen JA, Kaiser D, Myers RM. Gastrogenomic delights: a movablefeast. Nature Med 1997; 3: 1076-8.
    • (1997) Nature Med. , vol.3 , pp. 1076-1078
    • Eisen, J.A.1    Kaiser, D.2    Myers, R.M.3
  • 121
    • 0034012150 scopus 로고    scopus 로고
    • Functional genomics of Helicobacter pylori: Identification of a beta-1,4 galactosyltransferase and generation of mutants with altered lipopolysaccharide
    • Logan SM, Conlan JW, Monteiro MA, Wakarchuk WW, Altman E. Functional genomics of Helicobacter pylori: identification of a beta-1,4 galactosyltransferase and generation of mutants with altered lipopolysaccharide. Mol Microbiol 2000; 35: 1156-67.
    • (2000) Mol. Microbiol. , vol.35 , pp. 1156-1167
    • Logan, S.M.1    Conlan, J.W.2    Monteiro, M.A.3    Wakarchuk, W.W.4    Altman, E.5
  • 122
    • 0035956977 scopus 로고    scopus 로고
    • Comparative genomics of the restriction-modification systems in Helicobacter pylori
    • Lin LF, Posfai J, Roberts RJ, Kong H. Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc Natl Acad Sci USA 2001; 98: 2740-5.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 2740-2745
    • Lin, L.F.1    Posfai, J.2    Roberts, R.J.3    Kong, H.4
  • 123
    • 0033918170 scopus 로고    scopus 로고
    • Comparative genomics of Helicobacter pylori: Analysis of the outer membrane protein families
    • Alm RA, Bina J, Andrews BM, Doig P, Hancock RE, Trust TJ. Comparative genomics of Helicobacter pylori: analysis of the outer membrane protein families. Infect Immun 2000; 68: 4155-68.
    • (2000) Infect. Immun. , vol.68 , pp. 4155-4168
    • Alm, R.A.1    Bina, J.2    Andrews, B.M.3    Doig, P.4    Hancock, R.E.5    Trust, T.J.6
  • 126
    • 0035164634 scopus 로고    scopus 로고
    • Multilocus sequence typing system for Campylobacter jejuni
    • Dingle KE, Colles FM, Wareing DRA et al. Multilocus sequence typing system for Campylobacter jejuni. J Clin Microbiol 2001; 39: 14-23.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 14-23
    • Dingle, K.E.1    Colles, F.M.2    Wareing, D.R.A.3
  • 127
    • 0034753350 scopus 로고    scopus 로고
    • Genome sequence based fluorescent amplified fragment length polymorphism of Campylobacter jejuni, its relationship to serotyping and its implications for epidemiological analysis
    • Desai M, Logan JM, Frost JA, Stanley J. Genome sequence based fluorescent amplified fragment length polymorphism of Campylobacter jejuni, its relationship to serotyping and its implications for epidemiological analysis. J Clin Microbiol 2001; 39: 3823-9.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3823-3829
    • Desai, M.1    Logan, J.M.2    Frost, J.A.3    Stanley, J.4
  • 128
    • 0034628526 scopus 로고    scopus 로고
    • The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hyper-variable sequences
    • Parkhill J, Wren BW, Mungall K et al. The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hyper-variable sequences. Nature 2000; 403: 665-8.
    • (2000) Nature , vol.403 , pp. 665-668
    • Parkhill, J.1    Wren, B.W.2    Mungall, K.3
  • 129
    • 0036153611 scopus 로고    scopus 로고
    • Phase variation of Campylobacter jejuni 81-176 lipooligosaccharide affects ganglioside mimicry and invasiveness in vitro
    • Guerry P, Szymanski CM, Prendergast MM et al. Phase variation of Campylobacter jejuni 81-176 lipooligosaccharide affects ganglioside mimicry and invasiveness in vitro. Infect Immun 2002; 70: 787-93.
    • (2002) Infect. Immun. , vol.70 , pp. 787-793
    • Guerry, P.1    Szymanski, C.M.2    Prendergast, M.M.3
  • 130
    • 0034984992 scopus 로고    scopus 로고
    • Molecular mimicry in Campylobacter jejuni and Helicobacter pylori lipopolysaccharides: Contribution of gastrointestinal infections to autoimmunity
    • Moran AP, Prendergast MM. Molecular mimicry in Campylobacter jejuni and Helicobacter pylori lipopolysaccharides: contribution of gastrointestinal infections to autoimmunity. J Autoimmun 2001; 16: 241-56.
    • (2001) J. Autoimmun. , vol.16 , pp. 241-256
    • Moran, A.P.1    Prendergast, M.M.2
  • 131
    • 0035879709 scopus 로고    scopus 로고
    • Molecular population genetic anaysis of Campylobacter jejuni HS:19 associated with Guillain Barre syndrome and gastro-enteritis
    • Nachamkin I, Engberg J, Gutacker M et al. Molecular population genetic anaysis of Campylobacter jejuni HS:19 associated with Guillain Barre syndrome and gastro-enteritis. J Infect Dis 2001; 184: 174-8.
    • (2001) J. Infect. Dis. , vol.184 , pp. 174-178
    • Nachamkin, I.1    Engberg, J.2    Gutacker, M.3
  • 132
    • 0035879773 scopus 로고    scopus 로고
    • Absence of clonality of Campylobacter jejuni in serotypes other than HS:19 associated with Guillain Barre syndrome and gastro-enteritis
    • Engberg J, Nachamkin I, Fussing V et al. Absence of clonality of Campylobacter jejuni in serotypes other than HS:19 associated with Guillain Barre syndrome and gastro-enteritis. J Infect Dis 2001; 184: 179-85.
    • (2001) J. Infect. Dis. , vol.184 , pp. 179-185
    • Engberg, J.1    Nachamkin, I.2    Fussing, V.3
  • 133
    • 0034121791 scopus 로고    scopus 로고
    • Molecular characterisation of Campylobacter jejuni from patients with Guillain Barre and Miller Fisher syndromes
    • Endtz HP, Ang CW, Van den Braak N et al. Molecular characterisation of Campylobacter jejuni from patients with Guillain Barre and Miller Fisher syndromes. J Clin Microbiol 2000; 38: 2297-301.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 2297-2301
    • Endtz, H.P.1    Ang, C.W.2    Van den Braak, N.3
  • 134
    • 0034928625 scopus 로고    scopus 로고
    • A Camplobacter jejuni gene associated with immune-mediated neuropathy
    • Van Belkum A, Van den Braak N, Godschalk P et al. A Camplobacter jejuni gene associated with immune-mediated neuropathy. Nature Med 2001; 7: 752-3.
    • (2001) Nature Med. , vol.7 , pp. 752-753
    • Van Belkum, A.1    Van den Braak, N.2    Godschalk, P.3
  • 135
    • 0035156914 scopus 로고    scopus 로고
    • Deciphering Campylobacter jejuni cell surface interactions from the genome sequence
    • Linton D, Karlyshev AV, Wren BW. Deciphering Campylobacter jejuni cell surface interactions from the genome sequence. Curr Opin Microbiol 2001; 4: 35-40.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 35-40
    • Linton, D.1    Karlyshev, A.V.2    Wren, B.W.3
  • 136
    • 0036532548 scopus 로고    scopus 로고
    • Exploiting genome sequence: Predictions for mechanisms of Campylobacter chemotaxis
    • Marchant J, Wren B, Ketley J. Exploiting genome sequence: predictions for mechanisms of Campylobacter chemotaxis. Trends Microbiol 2002; 10: 155-9.
    • (2002) Trends Microbiol. , vol.10 , pp. 155-159
    • Marchant, J.1    Wren, B.2    Ketley, J.3
  • 137
    • 0034756445 scopus 로고    scopus 로고
    • Whole genome comparison of Campylobacter jejuni human isolates using a low cost micro-array reveals extensive genetic diversity
    • Dorrell N, Mangan JA, Laing KG et al. Whole genome comparison of Campylobacter jejuni human isolates using a low cost micro-array reveals extensive genetic diversity. Genome Res 2001; 11: 1706-15.
    • (2001) Genome Res. , vol.11 , pp. 1706-1715
    • Dorrell, N.1    Mangan, J.A.2    Laing, K.G.3
  • 138
    • 0035504408 scopus 로고    scopus 로고
    • Strain-specific genes of Helicobacter pylori: Distribution, function and dynamics
    • Janssen PJ, Audit B, Ouzounis CA. Strain-specific genes of Helicobacter pylori: distribution, function and dynamics. Nucleic Acids Res 2001; 29: 4395-404.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4395-4404
    • Janssen, P.J.1    Audit, B.2    Ouzounis, C.A.3
  • 139
    • 0005943409 scopus 로고    scopus 로고
    • Nucleic acid-based tests move slowly into clinical labs
    • Check W. Nucleic acid-based tests move slowly into clinical labs. ASM News 2001; 67: 560-5.
    • (2001) ASM News , vol.67 , pp. 560-565
    • Check, W.1
  • 140
    • 0031057995 scopus 로고    scopus 로고
    • The possibilities and limitations of nucleic acid amplification technology in diagnostic microbiology
    • Vaneechoutte M, Van Eldere J. The possibilities and limitations of nucleic acid amplification technology in diagnostic microbiology. J Med Microbiol 1997; 46: 188-94.
    • (1997) J. Med. Microbiol. , vol.46 , pp. 188-194
    • Vaneechoutte, M.1    Van Eldere, J.2
  • 141
    • 0035340684 scopus 로고    scopus 로고
    • The meaning and impact of the human genome sequence for microbiology
    • Relman DA, Falkow S. The meaning and impact of the human genome sequence for microbiology. Trends Microbiol 2001; 9: 206-8.
    • (2001) Trends Microbiol. , vol.9 , pp. 206-208
    • Relman, D.A.1    Falkow, S.2
  • 142
    • 0032713120 scopus 로고    scopus 로고
    • Computational genomics: Medicine of the future?
    • Dutton G. Computational genomics: medicine of the future? Ann Intern Med 1999; 131: 801-4.
    • (1999) Ann. Intern. Med. , vol.131 , pp. 801-804
    • Dutton, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.