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Volumn 14, Issue 7, 2003, Pages 429-436

Insights from human/mouse genome comparisons

Author keywords

[No Author keywords available]

Indexed keywords

APOLIPOPROTEIN A1; DNA;

EID: 0038354776     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00335-002-4001-1     Document Type: Review
Times cited : (65)

References (57)
  • 1
    • 0036286938 scopus 로고    scopus 로고
    • Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci
    • Abrahams BS, Mak GM, Berry ML, Palmquist DL, Saionz JR et al. (2002) Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci. Genomics 80, 45-53
    • (2002) Genomics , vol.80 , pp. 45-53
    • Abrahams, B.S.1    Mak, G.M.2    Berry, M.L.3    Palmquist, D.L.4    Saionz, J.R.5
  • 3
    • 0030913365 scopus 로고    scopus 로고
    • How good a model is the Fugu genome?
    • Aparicio S, Brenner S (1997) How good a model is the Fugu genome? Nature 387, 140
    • (1997) Nature , vol.387 , pp. 140
    • Aparicio, S.1    Brenner, S.2
  • 4
    • 0028962333 scopus 로고
    • Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes
    • Aparicio S, Morrison A, Gould A, Gilthorpe J, Chaudhuri C et al. (1995) Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes. Proc Natl Acad Sci USA 92, 1684-1688
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 1684-1688
    • Aparicio, S.1    Morrison, A.2    Gould, A.3    Gilthorpe, J.4    Chaudhuri, C.5
  • 5
    • 0037162885 scopus 로고    scopus 로고
    • Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    • Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297, 1301-1310
    • (2002) Science , vol.297 , pp. 1301-1310
    • Aparicio, S.1    Chapman, J.2    Stupka, E.3    Putnam, N.4    Chia, J.M.5
  • 6
    • 0034756824 scopus 로고    scopus 로고
    • Comparative genomics of the SOX9 region in human and Fugu rubripes: Conservation of short regulatory sequence elements within large intergenic regions
    • Bagheri-Fam S, Ferraz C, Demaille J, Scherer G, Pfeifer D (2001) Comparative genomics of the SOX9 region in human and Fugu rubripes: conservation of short regulatory sequence elements within large intergenic regions. Genomics 78, 73-82
    • (2001) Genomics , vol.78 , pp. 73-82
    • Bagheri-Fam, S.1    Ferraz, C.2    Demaille, J.3    Scherer, G.4    Pfeifer, D.5
  • 8
    • 0037027761 scopus 로고    scopus 로고
    • Comparative genomics: The mouse that roared
    • Boguski MS (2002) Comparative genomics: the mouse that roared. Nature 420, 515-516
    • (2002) Nature , vol.420 , pp. 515-516
    • Boguski, M.S.1
  • 9
    • 0037270315 scopus 로고    scopus 로고
    • AVID: A global alignment program
    • Bray N, Dubchak I, Pachter L (2003) AVID: A global alignment program. Genome Res 13, 97-102
    • (2003) Genome Res , vol.13 , pp. 97-102
    • Bray, N.1    Dubchak, I.2    Pachter, L.3
  • 10
    • 0027507739 scopus 로고
    • Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome
    • Brenner S, Elgar G, Sandford R, Macrae A, Venkatesh B et al. (1993) Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366, 265-268
    • (1993) Nature , vol.366 , pp. 265-268
    • Brenner, S.1    Elgar, G.2    Sandford, R.3    Macrae, A.4    Venkatesh, B.5
  • 12
    • 6644225936 scopus 로고    scopus 로고
    • Human chromosome 19 and related regions in mouse: Conservative and lineage-specific evolution
    • Dehal P, Predki P, Olsen AS, Kobayashi A, Folta P et al. (2001) Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. Science 293, 104-111
    • (2001) Science , vol.293 , pp. 104-111
    • Dehal, P.1    Predki, P.2    Olsen, A.S.3    Kobayashi, A.4    Folta, P.5
  • 13
    • 2242464840 scopus 로고    scopus 로고
    • The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
    • Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B et al. (2002) The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298, 2157-2167
    • (2002) Science , vol.298 , pp. 2157-2167
    • Dehal, P.1    Satou, Y.2    Campbell, R.K.3    Chapman, J.4    Degnan, B.5
  • 15
    • 0033799618 scopus 로고    scopus 로고
    • Active conservation of noncoding sequences revealed by three-way species comparisons
    • Dubchak I, Brudno M, Loots GG, Pachter L, Mayor C et al. (2000) Active conservation of noncoding sequences revealed by three-way species comparisons. Genome Res 10, 1304-1306
    • (2000) Genome Res , vol.10 , pp. 1304-1306
    • Dubchak, I.1    Brudno, M.2    Loots, G.G.3    Pachter, L.4    Mayor, C.5
  • 16
    • 0030927867 scopus 로고    scopus 로고
    • Searching for regulatory elements in human noncoding sequences
    • Duret L, Bucher P (1997) Searching for regulatory elements in human noncoding sequences. Curr Opin Struct Biol 7, 399-406
    • (1997) Curr Opin Struct Biol , vol.7 , pp. 399-406
    • Duret, L.1    Bucher, P.2
  • 17
    • 0029810306 scopus 로고    scopus 로고
    • Quality not quantity: The pufferfish genome
    • Elgar G (1996) Quality not quantity: the pufferfish genome. Hum Mol Genet 5, 1437-1442
    • (1996) Hum Mol Genet , vol.5 , pp. 1437-1442
    • Elgar, G.1
  • 18
    • 0029988841 scopus 로고    scopus 로고
    • Small is beautiful: Comparative genomics with the pufferfish (Fugu rubripes)
    • Elgar G, Sandford R, Aparicio S, Macrae A, Venkatesh B et al. (1996) Small is beautiful: comparative genomics with the pufferfish (Fugu rubripes). Trends Genet 12, 145-150
    • (1996) Trends Genet , vol.12 , pp. 145-150
    • Elgar, G.1    Sandford, R.2    Aparicio, S.3    Macrae, A.4    Venkatesh, B.5
  • 19
    • 0036937743 scopus 로고    scopus 로고
    • Association found between the promoter region polymorphism in the apolipoprotein A-V gene and the serum triglyceride level in Japanese school children
    • Endo K, Yanagi H, Araki J, Hirano C, Yamakawa-Kobayashi (2002) Association found between the promoter region polymorphism in the apolipoprotein A-V gene and the serum triglyceride level in Japanese school children. Hum Genet 111, 570-572
    • (2002) Hum Genet , vol.111 , pp. 570-572
    • Endo, K.1    Yanagi, H.2    Araki, J.3    Hirano, C.4    Yamakawa-Kobayashi5
  • 20
    • 0037055269 scopus 로고    scopus 로고
    • Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences
    • Gilligan P, Brenner S, Venkatesh B (2002) Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences. Gene 294, 35
    • (2002) Gene , vol.294 , pp. 35
    • Gilligan, P.1    Brenner, S.2    Venkatesh, B.3
  • 22
    • 0035154384 scopus 로고    scopus 로고
    • Long-range comparison of human and mouse SCL loci: Localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences
    • Gottgens B, Gilbert JG, Barton LM, Grafham D, Rogers J et al. (2001) Long-range comparison of human and mouse SCL loci: localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences. Genome Res 11, 87-97
    • (2001) Genome Res , vol.11 , pp. 87-97
    • Gottgens, B.1    Gilbert, J.G.2    Barton, L.M.3    Grafham, D.4    Rogers, J.5
  • 23
    • 0036110293 scopus 로고    scopus 로고
    • Transcriptional regulation of the stem cell leukemia gene (SCL)-comparative analysis of five vertebrate SCL loci
    • Gottgens B, Barton LM, Chapman MA, Sinclair AM, Knudsen B et al. (2002) Transcriptional regulation of the stem cell leukemia gene (SCL)-comparative analysis of five vertebrate SCL loci. Genome Res 12, 749-759
    • (2002) Genome Res , vol.12 , pp. 749-759
    • Gottgens, B.1    Barton, L.M.2    Chapman, M.A.3    Sinclair, A.M.4    Knudsen, B.5
  • 24
    • 0030076323 scopus 로고    scopus 로고
    • Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes
    • Gumucio DL, Shelton DA, Zhu W, Millinoff D, Gray T et al. (1996) Evolutionary strategies for the elucidation of cis and trans factors that regulate the developmental switching programs of the beta-like globin genes. Mol Phylogenet Evol 5, 18-32
    • (1996) Mol Phylogenet Evol , vol.5 , pp. 18-32
    • Gumucio, D.L.1    Shelton, D.A.2    Zhu, W.3    Millinoff, D.4    Gray, T.5
  • 25
    • 0034284481 scopus 로고    scopus 로고
    • Conserved noncoding sequences are reliable guides to regulatory elements
    • Hardison RC (2000) Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet 16, 369-372
    • (2000) Trends Genet , vol.16 , pp. 369-372
    • Hardison, R.C.1
  • 26
    • 0030722935 scopus 로고    scopus 로고
    • Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
    • Hardison RC, Oeltjen J, Miller W (1997) Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. Genome Res 7, 959-966
    • (1997) Genome Res , vol.7 , pp. 959-966
    • Hardison, R.C.1    Oeltjen, J.2    Miller, W.3
  • 27
    • 0037162770 scopus 로고    scopus 로고
    • Genomics. Vertebrate genomes compared
    • Hedges SB, Kumar S (2002) Genomics. Vertebrate genomes compared. Science 297, 1283-1285
    • (2002) Science , vol.297 , pp. 1283-1285
    • Hedges, S.B.1    Kumar, S.2
  • 28
    • 0029113706 scopus 로고
    • Human and mouse T-cell receptor loci: Genomics, evolution, diversity, and serendipity
    • Hood L, Rowen L, Koop BF (1995) Human and mouse T-cell receptor loci: genomics, evolution, diversity, and serendipity. Ann N Y Acad Sci 758, 390-412
    • (1995) Ann N Y Acad Sci , vol.758 , pp. 390-412
    • Hood, L.1    Rowen, L.2    Koop, B.F.3
  • 29
    • 0030465667 scopus 로고    scopus 로고
    • Conserved linkage between the puffer fish (Fugu rubripes) and human genes for platelet-derived growth factor receptor and macrophage colony-stimulating factor receptor
    • How GF, Venkatesh B, Brenner S (1996) Conserved linkage between the puffer fish (Fugu rubripes) and human genes for platelet-derived growth factor receptor and macrophage colony-stimulating factor receptor. Genome Res 6, 1185-1191
    • (1996) Genome Res , vol.6 , pp. 1185-1191
    • How, G.F.1    Venkatesh, B.2    Brenner, S.3
  • 31
    • 0033828267 scopus 로고    scopus 로고
    • Alfresco - A workbench for comparative genomic sequence analysis
    • Jareborg N, Durbin R (2000) Alfresco - a workbench for comparative genomic sequence analysis. Genome Res 10, 1148-1157
    • (2000) Genome Res , vol.10 , pp. 1148-1157
    • Jareborg, N.1    Durbin, R.2
  • 32
    • 0026441126 scopus 로고
    • The mouse beta-globin locus control region: Hypersensitive sites 3 and 4
    • Jimenez G, Gale KB, Enver T (1992) The mouse beta-globin locus control region: hypersensitive sites 3 and 4. Nucleic Acids Res 20, 5797-5803
    • (1992) Nucleic Acids Res , vol.20 , pp. 5797-5803
    • Jimenez, G.1    Gale, K.B.2    Enver, T.3
  • 34
    • 0030774258 scopus 로고    scopus 로고
    • Cis-acting elements conserved between mouse and pufferfish Otx2 genes govern the expression in mesencephalic neural crest cells
    • Kimura C, Takeda N, Suzuki M, Oshimura M, Aizawa S et al. (1997) Cis-acting elements conserved between mouse and pufferfish Otx2 genes govern the expression in mesencephalic neural crest cells. Development 124, 3929-3941
    • (1997) Development , vol.124 , pp. 3929-3941
    • Kimura, C.1    Takeda, N.2    Suzuki, M.3    Oshimura, M.4    Aizawa, S.5
  • 35
    • 0027963488 scopus 로고
    • Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA
    • Koop BF, Hood L (1994) Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA. Nat Genet 7, 48-53
    • (1994) Nat Genet , vol.7 , pp. 48-53
    • Koop, B.F.1    Hood, L.2
  • 37
    • 0030005755 scopus 로고    scopus 로고
    • The I.M.A.G.E. Consortium: An integrated molecular analysis of genomes and their expression
    • Lennon G, Auffray C, Polymeropoulos M, Soares MB (1996) The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression. Genomics 33, 151-152
    • (1996) Genomics , vol.33 , pp. 151-152
    • Lennon, G.1    Auffray, C.2    Polymeropoulos, M.3    Soares, M.B.4
  • 38
    • 0030076124 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis
    • Li WH, Ellsworth DL, Krushkal J, Chang BH, Hewett-Emmett D (1996) Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis. Mol Phylogenet Evol 5, 182-187
    • (1996) Mol Phylogenet Evol , vol.5 , pp. 182-187
    • Li, W.H.1    Ellsworth, D.L.2    Krushkal, J.3    Chang, B.H.4    Hewett-Emmett, D.5
  • 39
    • 0034616398 scopus 로고    scopus 로고
    • Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    • Loots GG, Locksley RM, Blankespoor CM, Wang ZE, Miller W et al. (2000) Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 288, 136-140
    • (2000) Science , vol.288 , pp. 136-140
    • Loots, G.G.1    Locksley, R.M.2    Blankespoor, C.M.3    Wang, Z.E.4    Miller, W.5
  • 40
    • 0024552250 scopus 로고
    • Complete nucleotide sequence of the rabbit beta-like globin gene cluster. Analysis of intergenic sequences and comparison with the human beta-like globin gene cluster
    • Margot JB, Demers GW, Hardison RC (1989) Complete nucleotide sequence of the rabbit beta-like globin gene cluster. Analysis of intergenic sequences and comparison with the human beta-like globin gene cluster. J Mol Biol 205, 15-40
    • (1989) J Mol Biol , vol.205 , pp. 15-40
    • Margot, J.B.1    Demers, G.W.2    Hardison, R.C.3
  • 41
    • 0034518158 scopus 로고    scopus 로고
    • VISTA: Visualizing global DNA sequence alignments of arbitrary length
    • Mayor C, Brudno M, Schwartz JR, Poliakov A, Rubin EM et al. (2000) VISTA: visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16, 1046-1047
    • (2000) Bioinformatics , vol.16 , pp. 1046-1047
    • Mayor, C.1    Brudno, M.2    Schwartz, J.R.3    Poliakov, A.4    Rubin, E.M.5
  • 42
    • 0036889986 scopus 로고    scopus 로고
    • The genetic effect of the apolipoprotein AV gene on the serum triglyceride level in Japanese
    • Nabika T, Nasreen S, Kobayashi S, Masuda J (2002) The genetic effect of the apolipoprotein AV gene on the serum triglyceride level in Japanese. Atherosclerosis 165, 201-204
    • (2002) Atherosclerosis , vol.165 , pp. 201-204
    • Nabika, T.1    Nasreen, S.2    Kobayashi, S.3    Masuda, J.4
  • 43
    • 0000791476 scopus 로고
    • Lengths of chromosomal segments conserved since divergence of man and mouse
    • Nadeau JH, Taylor BA (1984) Lengths of chromosomal segments conserved since divergence of man and mouse. Proc Natl Acad Sci USA 81, 814-818
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 814-818
    • Nadeau, J.H.1    Taylor, B.A.2
  • 44
    • 0033968788 scopus 로고    scopus 로고
    • Bacterial artificial chromosome libraries for mouse sequencing and functional analysis
    • Osoegawa K, Tateno M, Woon PY, Frengen E, Mammoser AG et al. (2000) Bacterial artificial chromosome libraries for mouse sequencing and functional analysis. Genome Res 10, 116-128
    • (2000) Genome Res , vol.10 , pp. 116-128
    • Osoegawa, K.1    Tateno, M.2    Woon, P.Y.3    Frengen, E.4    Mammoser, A.G.5
  • 45
    • 0035080952 scopus 로고    scopus 로고
    • A bacterial artificial chromosome library for sequencing the complete human genome
    • Osoegawa K, Mammoser AG, Wu C, Frengen E, Zeng C et al. (2001) A bacterial artificial chromosome library for sequencing the complete human genome. Genome Res 11, 483-496
    • (2001) Genome Res , vol.11 , pp. 483-496
    • Osoegawa, K.1    Mammoser, A.G.2    Wu, C.3    Frengen, E.4    Zeng, C.5
  • 46
    • 0035261381 scopus 로고    scopus 로고
    • Genomic strategies to identify mammalian regulatory sequences
    • Pennacchio LA, Rubin EM (2001) Genomic strategies to identify mammalian regulatory sequences. Nat Rev Genet 2, 100-109
    • (2001) Nat Rev Genet , vol.2 , pp. 100-109
    • Pennacchio, L.A.1    Rubin, E.M.2
  • 47
    • 0035812707 scopus 로고    scopus 로고
    • An apolipoprotein influencing triglycerides in humans and mice revealed by comparative sequencing
    • Pennacchio LA, Olivier M, Hubacek JA, Cohen JC, Cox DR et al. (2001) An apolipoprotein influencing triglycerides in humans and mice revealed by comparative sequencing. Science 294, 169-173
    • (2001) Science , vol.294 , pp. 169-173
    • Pennacchio, L.A.1    Olivier, M.2    Hubacek, J.A.3    Cohen, J.C.4    Cox, D.R.5
  • 48
    • 1842864853 scopus 로고    scopus 로고
    • Two independent apolipoprotein A5 haplotypes influence human plasma triglyceride levels
    • Pennacchio LA, Olivier M, Hubacek JA, Krauss RM, Rubin EM et al. (2002) Two independent apolipoprotein A5 haplotypes influence human plasma triglyceride levels. Hum Mol Genet 11, 3031-3038
    • (2002) Hum Mol Genet , vol.11 , pp. 3031-3038
    • Pennacchio, L.A.1    Olivier, M.2    Hubacek, J.A.3    Krauss, R.M.4    Rubin, E.M.5
  • 49
    • 0036720541 scopus 로고    scopus 로고
    • Newly identified apolipoprotein AV gene predisposes to high plasma triglycerides in familial combined hyperlipidemia
    • Ribalta J, Figuera L, Fernandez-Ballart J, Vilella E, Castro Cabezas M et al. (2002) Newly identified apolipoprotein AV gene predisposes to high plasma triglycerides in familial combined hyperlipidemia. Clin Chem 48, 1597-1600
    • (2002) Clin Chem , vol.48 , pp. 1597-1600
    • Ribalta, J.1    Figuera, L.2    Fernandez-Ballart, J.3    Vilella, E.4    Castro Cabezas, M.5
  • 50
    • 0031858210 scopus 로고    scopus 로고
    • Identification of an evolutionarily conserved 110 base-pair cis-acting regulatory sequence that governs Wnt-1 expression in the routine neural plate
    • Rowitch DH, Echelard Y, Danielian PS, Gellner K, Brenner S (1998) Identification of an evolutionarily conserved 110 base-pair cis-acting regulatory sequence that governs Wnt-1 expression in the routine neural plate. Development 125, 2735-2746
    • (1998) Development , vol.125 , pp. 2735-2746
    • Rowitch, D.H.1    Echelard, Y.2    Danielian, P.S.3    Gellner, K.4    Brenner, S.5
  • 51
    • 0034020416 scopus 로고    scopus 로고
    • PipMaker - A web server for aligning two genomic DNA sequences
    • Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C et al. (2000) PipMaker - a web server for aligning two genomic DNA sequences. Genome Res 10, 577-586
    • (2000) Genome Res , vol.10 , pp. 577-586
    • Schwartz, S.1    Zhang, Z.2    Frazer, K.A.3    Smit, A.4    Riemer, C.5
  • 53
    • 0037112882 scopus 로고    scopus 로고
    • Relative contribution of variation within the APOC3/A4/A5 gene cluster in determining plasma triglycerides
    • Talmud PJ, Hawe E, Martin S, Olivier M, Miller GJ et al. (2002) Relative contribution of variation within the APOC3/A4/A5 gene cluster in determining plasma triglycerides. Hum Mol Genet 11, 3039-3046
    • (2002) Hum Mol Genet , vol.11 , pp. 3039-3046
    • Talmud, P.J.1    Hawe, E.2    Martin, S.3    Olivier, M.4    Miller, G.J.5
  • 54
    • 0030730286 scopus 로고    scopus 로고
    • Transgenic rats reveal functional conservation of regulatory controls between the Fugu isotocin and rat oxytocin genes
    • Venkatesh B, Si-Hoe SL, Murphy D, Brenner S (1997) Transgenic rats reveal functional conservation of regulatory controls between the Fugu isotocin and rat oxytocin genes. Proc Natl Acad Sci USA 94, 12462-12466
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 12462-12466
    • Venkatesh, B.1    Si-Hoe, S.L.2    Murphy, D.3    Brenner, S.4
  • 55
    • 0034733948 scopus 로고    scopus 로고
    • Fugu: A compact vertebrate reference genome
    • Venkatesh B, Gilligan P, Brenner S (2000) Fugu: a compact vertebrate reference genome. FEBS Lett 476, 3-7
    • (2000) FEBS Lett , vol.476 , pp. 3-7
    • Venkatesh, B.1    Gilligan, P.2    Brenner, S.3


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