Stable co-occupancy of transcription factors and histones at the HIV-1 enhancer

EMBO Journal

Volumn 16, Issue 9, 1997, Pages 2463-2472

  Steger, David J ^a   Workman, Jerry L ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Chromatin remodeling; Histone displacement; HIV 1; Nucleosome binding; Transcriptional regulation

Indexed keywords

CHAPERONE; DEOXYRIBONUCLEASE I; DNA FRAGMENT; HISTONE; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; LYMPHOID ENHANCER FACTOR 1; NUCLEOPLASMIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SP1; VIRUS DNA;

ARTICLE; BINDING SITE; CHROMATIN STRUCTURE; CONTROLLED STUDY; DNA SEQUENCE; ENHANCER REGION; GENE CONTROL; HUMAN IMMUNODEFICIENCY VIRUS 1; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN DNA BINDING;

BINDING SITES; CARRIER PROTEINS; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; DEOXYRIBONUCLEASE I; DNA, VIRAL; DNA-BINDING PROTEINS; HELIX-LOOP-HELIX MOTIFS; HISTONES; HIV ENHANCER; HUMANS; LYMPHOID ENHANCER-BINDING FACTOR 1; NF-KAPPA B; NUCLEAR PROTEINS; NUCLEOSOMES; PHOSPHOPROTEINS; PROTEIN-TYROSINE KINASES; PROTO-ONCOGENE PROTEIN C-ETS-1; PROTO-ONCOGENE PROTEINS; PROTO-ONCOGENE PROTEINS C-ETS; SP1 TRANSCRIPTION FACTOR; TEMPLATES, GENETIC; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; UPSTREAM STIMULATORY FACTORS;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0030997719     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/16.9.2463     Document Type: Article

References (34)

1. Adams, C.C. and Workman, J.L. (1995) The binding of disparate transcription factors to nucleosomal DNA is inherently cooperative. Mol. Cell. Biol., 15, 1405-1421.
2. Bresnick, E.H., Bustin, M., Marsaud, V., Richard-Foy, H. and Hager, G.L. (1992) The transcriptionally active MMTV promoter is depleted of histone H1. Nucleic Acids Res., 20, 273-278.
3. Côté, J., Quinn, J., Workman, J.L. and Peterson, C.L. (1994) Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science, 265, 53-60.
4. Côté, J., Utley, R.T. and Workman, J. (1995) Basic analysis of transcription factor binding to nucleosomes. Methods Mol. Genet., 6b, 108-128.
5. Demarchi, F., D'agaro, P., Falaschi, A. and Giacca, M. (1993) In vivo footprinting analysis of constitutive and inducible protein-DNA interactions at the long terminal repeat of human immunodeficiency virus type 1. J. Virol., 67, 7450-7460.
6. Elgin, S.C.R. (1988) The formation and function of DNase I hypersensitive sites in the process of gene activation. J. Biol. Chem., 263, 19259-19262.
7. Felsenfeld, G. (1996) Chromatin unfolds. Cell, 86, 13-19.
8. Fisher, R. J., Fivash, M., Casas-Finet, J., Erickson, J.W., Kondoh, A., Bladen, S.V., Fisher, C. Watson, D.K. and Papas, T. (1994) Real-time DNA binding measurements of the ETS1 recombinant oncoproteins reveal significant kinetic differences between the p42 and p51 isoforms. Protein Sci., 3, 257-266.
9. Gaynor, R. (1992) Cellular transcription factors involved in the regulation of HIV-1 gene expression. AIDS, 6, 347-363.
10. Gross, D.S. and Garrard, W.T. (1988) Nuclease hypersensitive sites in chromatin. Annu. Rev. Biochem., 57, 159-197.
11. Jones, K.A. and Peterlin, B.M. (1994) Control of RNA initiation and elongation at the HIV-1 promoter. Annu. Rev. Biochem., 63, 717-743.
12. Kim, J. Y. H., Gonzalez-Scarano, F., Zeichner, S.L. and Alwine, J.C. (1993) Replication of type 1 human immunodeficiency viruses containing linker substitution mutations in the -201 to -130 region of the long terminal repeat. J. Virol., 67, 1658-1662.
13. Kornberg, R.D. and Lorch, Y. (1995) Interplay between chromatin structure and transcription. Curr. Opin. Cell Biol., 7, 371-375.
14. Kretzschmar, M., Meisterernst, M., Scheidereit, C., Li, G. and Roeder, R.G. (1992) Transcriptional regulation of the HIV-1 promoter by NF-κB in vitro. Genes Dev., 6, 761-774.
15. Lin, Y.S., Carey, M.F., Ptashne, M. and Green, M.R. (1988) GAL4 derivatives function alone and synergistically with mammalian activators in vitro. Cell, 54, 659-664.
16. Marsh, J. L., Erfle, M. and Wykes, E.J. (1984) The pIC plasmid and phage vectors with versatile cloning sites for recombinant selection by insertional inactivation. Gene, 32, 481-485.
17. McGhee, J. D., Wood, W.I., Dolan, M., Engel, J.D. and Felsenfeld, G. (1981) A 200 base pair region at the 5′ end of the chicken adult β-globin gene is accessible to nuclease digestion. Cell, 27, 45-55.
18. McPherson, C.E., Shim, E.Y., Friedman, D.S. and Zaret, K.S. (1993) An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array. Cell, 75, 387-398.
19. Owen-Hughes, T.A. and Workman, J.L. (1994) Experimental analysis of chromatin function in transcription control. Crit. Rev. Eukaryotic Gene Expression, 4, 403-441.
20. Owen-Hughes, T. and Workman, J.L. (1996) Remodeling the chromatin structure of a nucleosome array by transcription factor-targeted transdisplacement of histones. EMBO J., 15, 4702-4712.
21. Owen-Hughes, T., Utley, R.T., Côté, J., Peterson, C.L. and Workman, J.L. (1996) Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science, 273, 513-516.
22. Pazin, M. J., Sheridan, P.L., Cannon, K., Cao, Z., Keck, J.G., Kadonaga, J.T. and Jones, K.A. (1996) NF-κB-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro. Genes Dev., 10, 37-49.
23. Pognonec, P. and Roeder, R.G. (1991) Recombinant 43-kDa USF binds to DNA and activates transcription in a manner indistinguishable from that of natural 43/44-kDa USF. Mol. Cell. Biol. 11, 5125-5136.
24. Sheridan, P.L., Sheline, C.T., Cannon, K., Voz, M.L., Pazin, M.J., Kadonaga, J. T. and Jones, K.A. (1995) Activation of the HIV-1 enhancer by the LEF-1 HMG protein on nucleosome-assembled DNA in vitro. Genes Dev., 9, 2090-2104.
25. Simpson, R.T., Thoma, F. and Brubaker, J.M. (1985) Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure. Cell, 42, 799-808.
26. Steger, D.J. and Workman, J.L. (1996) Remodeling chromatin structures for transcription: what happens to the histones? BioEssays, 18, 875-884.
27. Studier, F.W., Rosenberg, A.H., Dunn, J.J. and Dubendorff, J.W. (1990) Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol., 185, 60-89.
28. Truss, M., Bartsch, J., Schelbert, A., Hache, R.J. and Beato, M. (1995) Hormone induces binding of receptors and transcription factors to a rearranged nucleosome on the MMTV promoter in vivo. EMBO J., 14, 1737-1751.
29. van Holde, K., Zlatanova, J., Arents, G. and Moudrianakis, E. (1995) Elements of chromatin structure: histones, nucleosomes and fibres. In Elgin, S.C.R. (ed.), Chromatin Structure and Gene Expression. IRL Press at Oxford University Press. Oxford. Vol. 9. pp. 1-26.
30. Van Lint, C., Emiliani, S., Ott, M. and Verdin, E. (1996) Transcriptional activation and chromatin remodeling of the HIV-1 promoter in response to histone acetylation. EMBO J., 15, 1112-1120.
31. Verdin, E. (1991) DNase I-hypersensitive sites are associated with both long terminal repeats and with the intragenic enhancer of integrated human immunodeficiency virus type 1. J. Virol., 65, 6790-6799.
32. Verdin, E., Paras, P.J. and Van Lint, C. (1993) Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation. EMBO J., 12, 3249-3259.
33. Walter, P.P., Owen-Hughes, T.A., Côté, J. and Workman, J.L. (1995) Stimulation of transcription factor binding and histone displacement by nucleosome assembly protein 1 and nucleoplasmin requires disruption of the histone octamer. Mol. Cell. Biol., 15, 6178-6187.
34. Waterman, M.L., Fischer, W.H. and Jones, K.A. (1991) A thymus-specific member of the HMG protein family regulates the human T cell receptor Cα enhancer. Genes Dev., 5, 656-669.