Cc RNase: The Ceratitis capitata ortholog of a novel highly conserved protein family in metazoans

Nucleic Acids Research

Volumn 31, Issue 12, 2003, Pages 3092-3100

  Rampias, Theodoros N ^a   Sideris, Diamantis C ^a   Fragoulis, Emmanuel G ^a  

^a UNIVERSITY OF ATHENS   (Greece)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; POLYCYTIDYLIC ACID; POLYURIDYLIC ACID; RECOMBINANT PROTEIN; RIBONUCLEASE; RIBOSOME RNA;

AMINO ACID SEQUENCE; ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ISOLATION; ESCHERICHIA COLI; EXPRESSED SEQUENCE TAG; HOST CELL; HUMAN; MEDITERRANEAN FRUIT FLY; METAZOON; MITOSIS INHIBITION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PREDICTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FAMILY; SEQUENCE HOMOLOGY; ANIMAL; CLASSIFICATION; ENZYMOLOGY; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; PHYLOGENY;

ANIMALIA; CAENORHABDITIS; CAENORHABDITIS ELEGANS; CAPITATA; CERATITIS; CERATITIS CAPITATA; DROSOPHILA MELANOGASTER; ESCHERICHIA COLI; INSECTA; METAZOA;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CERATITIS CAPITATA; DNA, COMPLEMENTARY; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINANT PROTEINS; RIBONUCLEASES; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0037901852     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg414     Document Type: Article

References (50)

1. Wellington,C.L., Greenberg,M.E. and Belasco,J.G. (1993) The destabilizing elements in the coding region of c-fos mRNA are recognized as RNA. Mol. Cell. Biol., 13, 5034-5042.
2. Coutts,M., Krowczynska,A. and Brawerman,G. (1993) Protection of mRNA against nucleases in cytoplasmic extracts of mouse sarcoma ascites cells. Biochim. Biophys. Acta, 1173, 49-56.
3. Beintema,J.J. and Kleineidam,R.G. (1998) The ribonuclease A superfamily: general discussion. Cell Mol. Life Sci., 54, 825-832.
4. Benner,S.A. and Allemann,R.K. (1989) The return of pancreatic ribonucleases. Trends Biochem. Sci., 14, 396-397.
5. D'Alessio,G., Di Donato,A., Parente,A. and Piccoli,R. (1991) Seminal RNase: a unique member of the ribonuclease superfamily. Trends Biochem. Sci., 16, 104-106.
6. Vallee,B.L. and Riordan,J.F. (1997) Organogenesis and angiogenin. Cell Mol. Life Sci., 53, 803-815.
7. Matousek,J. (2001) Ribonucleases and their antitumor activity. Comp. Biochem. Physiol., 129C, 175-191.
8. Zuo,Y. and Deutscher,M.P. (2001) Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res., 29, 1017-1026.
9. Beintema,J.J., Schuller,C., Irie,M. and Carsana,A. (1988) Molecular evolution of the ribonuclease superfamily. Prog. Biophys. Mol. Biol., 51, 165-192.
10. Filippov,V., Filippova,M. and Gill,S.S. (1997) Functional characterization of RNase H1 from Drosophila melanogaster. Biochem. Biophys. Res. Commun., 240, 844-849.
11. Filippov,V., Filippova,M. and Gill,S.S. (2001) Drosophila RNase H1 is essential for development but not for proliferation. Mol. Genet. Genomics, 265, 771-777.
12. Garcia-Segura,J.M., Fominaya,J.M., Orozco,M.M. and Gavilanes,J.G. (1985) Alkaline ribonuclease from the insect Ceratitis capitata. Biochim. Biophys. Acta, 826, 129-136.
13. Garcia-Segura,J.M., Orozco,M.M., Fominaya,J.M. and Gavilanes,J.G. (1986) Purification, molecular and enzymic characterization of an acid RNase from the insect Ceratitis capitata. Eur. J. Biochem., 15, 367-372.
14. Sideris,D.C. and Fragoulis,E.G. (1987) Purification and characterization of a ribonuclease specific for poly(U) and poly(C) from the larvae of Ceratitis capitata. Eur. J. Biochem., 164, 309-315.
15. Lalioti,V.S., Sideris,D.C. and Fragoulis,E.G. (1992) Further characterization of a poly(U), poly(C) ribonuclease from the insect Ceratitis capitata. Insect Biochem. Mol. Biol., 22, 125-135.
16. Sideris,D.C., Rampias,T.N. and Fragoulis,E.G. (2000) Isolation and sequencing of a cDNA encoding for a ribonuclease from the insect Ceratitis capitata. Insect Biochem. Mol. Biol., 30, 153-161.
17. Bouhin,H., Charles,J.P., Quennedey,B. and Delachambre,J. (1992) Developmental profiles of epidermal mRNAs during the pupal-adult molt of Tenebrio molitor and isolation of a cDNA clone encoding an adult cuticular protein: effects of a juvenile hormone analogue. Dev. Biol., 149, 112-122.
18. Tagle,D.A., Swaroop,M., Lovett,M. and Collins,F.S. (1993) Magnetic bead capture of expressed sequences encoded within large genomic segments. Nature, 361, 751-753.
19. Boguski,M.S., Lowe,T.M. and Tolstoshev,C.M. (1993) dbEST-database for 'expressed sequence tags'. Nature Genet., 4, 332-333.
20. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhahg,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
21. Thompson,J.D., Gibson,T.J., Plewniak,F., Jeanmougin,F. and Higgins,D.G. (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
22. Saitou,N. and Nei,M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
23. Felsenstein,J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
24. Perriere,G. and Gouy,M. (1996) WWW-query: an on-line retrieval system for biological sequence banks. Biochimie, 78, 364-369.
25. Rosenberg,H.F. (1995) Recombinant human eosinophil cationic protein. Ribonuclease activity is not essential for cytotoxicity. J. Biol. Chem., 270, 7876-7881.
26. Laemmli,U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227, 680-685.
27. Bradford,M.M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem., 72, 248-254.
28. Slifman,N.R., Loegering,D.A., McKean,D.J. and Gleich,G.J. (1986) Ribonuclease activity associated with human eosinophil-derived neurotoxin and eosinophil cationic protein. J. Immunol., 137, 2913-2917.
29. Blank,A., Sugiyama,R.H. and Dekker,C.A. (1982) Activity staining of nucleolytic enzymes after sodium dodecyl sulfate-polyacrylamide gel electrophoresis: use of aqueous isopropanol to remove detergent from gels. Anal. Biochem., 120, 267-275.
30. Perry,R.P., La Torre,J., Kelley,D.E. and Greenberg,J.R. (1972) On the lability of poly(A) sequences during extraction of messenger RNA from polyribosomes. Biochim. Biophys. Acta, 262, 220-226.
31. Cavener,D.R. and Ray,S.C. (1991) Eukaryotic start and stop translation sites. Nucleic Acids Res., 19, 3185-3192.
32. Kyte,J. and Doolittle,R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol., 157, 105-132.
33. Gogarten,J.P. (1994) Which is the most conserved group of proteins? Homology-orthology, paralogy, xenology and the fusion of independent lineages. J. Mol. Evol., 39, 541-543.
34. Giribet,G. (2002) Current advances in the phylogenetic reconstruction of metazoan evolution. A new paradigm for the Cambrian explosion? Mol. Phylogenet. Evol., 24, 345-357.
35. Studier,F.W. (1991) Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J. Mol. Biol., 219, 37-44.
36. Kishigami,S., Akiyama,Y. and Ito,K. (1995) Redox states of DsbA in the periplasm of Escherichia coli. FEBS Lett., 364, 55-58.
37. Adoutte,A., Balavoine,G., Lartillot,N., Lespinet,O., Prud'homme,B. and de Rosa,R. (2000) The new animal phylogeny: reliability and implications. Proc. Natl Acad. Sci. USA, 97, 4453-4456.
38. Gerard,C.J., Andrejka,L.M. and Macina,R.A. (2000) Mitochondrial ATP synthase 6 as an endogenous control in the quantitative RT-PCR analysis of clinical cancer samples. Mol. Diagn., 5, 39-46.
39. Walsh,C. (1979) Enzymatic Reaction Mechanisms. W.H. Freeman and Co., San Francisco, CA.
40. Zhang,J., Dyer,K.D. and Rosenberg,H.F. (2002) RNase 8, a novel RNase A superfamily ribonuclease expressed uniquely in placenta. Nucleic Acids Res., 30, 1169-1175.
41. Steyaert,J., Hallenga,K., Wyns,L. and Stanssens,P. (1990) Histidine-40 of ribonuclease T1 acts as base catalyst when the true catalytic base, glutamic acid-58, is replaced by alanine. Biochemistry, 29, 9064-9072.
42. 2+ rescue of the Glu117Asp mutant. Biochemistry, 40, 5102-5110.
43. Chapados,B.R., Chai,Q., Hosfield,D.J., Qiu,J., Shen,B. and Tainer,J.A. (2001) Structural biochemistry of a type 2 RNase H: RNA primer recognition and removal during DNA replication. J. Mol. Biol., 307, 541-556.
44. Diaz-Guerra,M., Esteban,M. and Martinez,J.L. (1997) Growth of Escherichia coli in acetate as a sole carbon source is inhibited by ankyrin-like repeats present in the 2′,5′-linked oligoadenylate-dependent human RNase L enzyme. FEMS Microbiol Lett., 149, 107-113.
45. Zhang,J., Dyer,K.D. and Rosenberg,H.F. (2003) Human RNase 7: a new cationic ribonuclease of the RNase A superfamily. Nucleic Acids Res., 31, 602-607.
46. Mastronicola,M.R., Piccoli,R. and D'Alessio,G. (1995) Key extracellular and intracellular steps in the antitumor action of seminal ribonuclease. Eur. J. Biochem., 230, 242-499.
47. Ardelt,W., Mikulski,S.M. and Shogen,K. (1991) Amino acid sequence of an anti-tumor protein from Rana pipiens oocytes and early embryos. Homology to pancreatic ribonucleases. J. Biol. Chem., 266, 245-251.
48. Bretscher,L.E., Abel,R.L. and Raines,R.T. (2000) A ribonuclease A variant with low catalytic activity but high cytotoxicity. J. Biol. Chem., 275, 9893-9896.
49. Kim,J.S., Soucek,J., Matousek,J. and Raines,R.T. (1995) Mechanism of ribonuclease cytotoxicity. J. Biol. Chem., 270, 31097-31102.
50. Youle,R.J., Newton,D., Wu,Y.N., Gadina,M. and Rybak,S.M. (1993) Cytotoxic ribonucleases and chimeras in cancer therapy. Crit. Rev. Ther. Drug Carrier Syst., 10, 1-28.