Combined single-molecule force and fluorescence measurements for biology

Journal of Biology

Volumn 2, Issue 1, 2003, Pages

  Wallace, Mark I ^a   Molloy, Justin E ^a   Trentham, David R ^a  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA;

ATOMIC FORCE MICROSCOPY; CONFORMATIONAL TRANSITION; DNA CONFORMATION; FLUORESCENCE; FLUORESCENCE MICROSCOPY; FORCE; MECHANICAL STRESS; MOLECULAR DYNAMICS; PRIORITY JOURNAL; SHORT SURVEY; BIOLOGY; FLUORESCENCE RESONANCE ENERGY TRANSFER; TRENDS;

BIOLOGY; FLUORESCENCE RESONANCE ENERGY TRANSFER; MICROSCOPY, ATOMIC FORCE;

EID: 0037731315     PISSN: 14785854     EISSN: 14754924     Source Type: Journal    
DOI: None     Document Type: Short Survey

References (42)

1. Nie SM, Zare RN: Optical detection of single molecules. Annu Rev Biophys Biomol Struct 1997, 26:567-596.
2. Deniz AA, Laurence TA, Dahan M, Chemla DS, Schultz PG, Weiss S: Ratiometric single-molecule studies of freely diffusing biomolecules. Annu Rev Phys Chem 2001, 52:233-253.
3. Xie XS, Trautman JK: Optical studies of single molecules at room temperature. Annu Rev Phys Chem 1998, 49:441-480.
4. Weiss S: Fluorescence spectroscopy of single biomolecules. Science 1999, 283:1676-1683.
5. Schutz GJ, Sonnleitner M, Hinterdorfer P, Schindler H: Single molecule microscopy of biomembranes (review). Mol Membr Biol 2000, 17:17-29.
6. Schwille P, Kettling U: Analyzing single protein molecules using optical methods. Curr Opin Biotechnol 2001, 12:382-386.
7. Bustamante C, Bryant Z, Smith SB: Ten years of tension: single-molecule DNA mechanics. Nature 2003, 421:423-427.
8. Lang MJ, Fordyce PM, Block SM: Combined optical trapping and single-molecule fluorescence. J Biol 2003, 2:6.
9. Zhuang XW, Kim H, Pereira MJB, Babcock HP, Walter NG, Chu S: Correlating structural dynamics and function in single ribozyme molecules. Science 2002, 296:1473-1476.
10. Funatsu T, Harada Y, Tokunaga M, Saito K, Yanagida T: Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution. Nature 1995, 374:555-559.
11. Xie XS, Lu HP: Single-molecule enzymology. J Biol Chem 1999, 274:15967-15970.
12. Edman L, Rigler R: Memory landscapes of single-enzyme molecules. Proc Natl Acad Sci USA 2000, 97:8266-8271.
13. Oiwa K, Eccleston JF, Anson M, Kikumoto M, Davis CT, Reid GP, Ferenczi MA, Corrie JET, Yamada A, Nakayama H, Trentham DR: Comparative single-molecule and ensemble myosin enzymology: sulfoindocyanine ATP and ADP derivatives. Biophys J 2000, 78:3048-3071.
14. Deniz AA, Laurence TA, Beligere GS, Dahan M, Martin AB, Chemla DS, Dawson PE, Schultz PG, Weiss S: Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2. Proc Natl Acad Sci USA 2000, 97: 5179-5184.
15. Jia YW, Talaga DS, Lau WL, Lu HSM, DeGrado WF, Hochstrasser RM: Folding dynamics of single GCN4 peptides by fluorescence resonant energy transfer confocal microscopy. Chem Phys 1999, 247:69-83.
16. Sako Y, Minoghchi S, Yanagida T: Single-molecule imaging of EGFR signalling on the surface of living cells. Nat Cell Biol 2000, 2:168-172.
17. 2+ channels in live cells. Biophys J 2001, 81:2639-2646.
18. Mashanov GI, Tacon D, Knight AE, Peckham M, Molloy JE: Visualizing single molecules inside living cells using total internal reflection fluorescence microscopy. Methods 2003, 29:142-152.
19. Mehta AD, Rief M, Spudich JA, Smith DA, Simmons RM: Single-molecule biomechanics with optical methods. Science 1999, 283:1689-1695.
20. Tskhovrebova L, Trinick J, Sleep JA, Simmons RM: Elasticity and unfolding of single molecules of the giant muscle protein titin. Nature 1997, 387:308-312.
21. Veigel C, Coluccio LM, Jontes JD, Sparrow JC, Milligan RA, Molloy JE: The motor protein myosin-I produces its working stroke in two steps. Nature 1999, 398:530-533.
22. Strick TR, Allemand JF, Bensimon D, Croquette V: Stress-induced structural transitions in DNA and proteins. Annu Rev Biophys Biomol Struct 2000, 29:523-543.
23. Matthias R, Gautel M, Oesterhelt F, Fernandez JM, Gaub HE: Reversible unfolding of individual titin immunoglobulin domains by AFM. Science 1997, 276: 1109-1112.
24. Hansma HG: Surface biology of DNA by atomic force microscopy. Annu Rev Phys Chem 2001, 52:71-92.
25. Grandbois M, Beyer M, Rief M, Clausen-Schaumann H, Gaub HE: How strong is a covalent bond? Science 1999, 283:1727-1730.
26. Kitamura K, Tokunaga M, Iwane AH, Yanagida T: A single myosin head moves along an actin filament with regular steps of 5.3 nanometres. Nature 1999, 397:129-134.
27. Hugel T, Holland NB, Cattani A, Moroder L, Seitz M, Gaub HE: Single-molecule optomechanical cycle. Science 2002, 296:1103-1106.
28. Lang MJ, Asbury CL, Shaevitz JW, Block SM: An automated two-dimensional optical force clamp for single molecule studies. Biophys J 2002, 83:491-501.
29. Ishijima A, Kojima H, Funatsu T, Tokunaga M, Higuchi H, Tanaka H, Yanagida T: Simultaneous observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin. Cell 1998, 92:161-171.
30. Harada Y, Funatsu T, Murakami K, Nonoyama Y, Ishihama A, Yanagida T: Single-molecule imaging of RNA polymerase-DNA interactions in real time. Biophys J 1999, 76:709-715.
31. Geeves MA, Holmes KC: Structural mechanism of muscle contraction. Annu Rev Biochem 1999, 68:687-728.
32. Blackman MJ, Corrie JET, Croney JC, Kelly G, Eccleston JF, Jameson DM: Structural and biochemical characterization of a fluorogenic rhodamine-labeled malarial protease substrate. Biochemistry 2002, 41:12244-12252.
33. Jovin, TM: Quantum dots finally come of age. Nat Biotechnol 2003, 21:32-33.
34. Michalet X, Lacoste TD, Pinaud F, Chemla DS, Alivisatos AP, Weiss S: Ultrahigh resolution multicolor colocalization of single fluorescent nanocrystals. In Nanoparticles and Nanostructural Surfaces: Novel Reporters with Biological Applications. Edited by Murphy CJ. Proc SPIE 2001, 4258:8-13.
35. Larsen DR, Zipfel W, Clark S, Bruchez M, Wise F, Webb WW: Novel water-soluble quantum dots with large twophoton cross-sections for biological imaging. Biophys J 2003, 84:23a.
36. Blaschke UK, Silberstein J, Muir TW: Protein engineering by expressed protein ligation. Meth Enzymol 2000, 328:478-496.
37. Ratner V, Sinev M, Haas E: Determination of intramolecular distance distribution during protein folding on the millisecond timescale. J Mol Biol 2000, 299:1363-1371.
38. Medina MA, Schwille P: Fluorescence correlation spectroscopy for the detection and study of single molecules in biology. Bioessays 2002, 24:758-764.
39. Hamill OP, Marty A, Neher E, Sakmann B, Sigworth FJ: Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches. Pflügers Arch 1981, 391:85-100.
40. Sakmann B, Neher E: Single-channel recording. 2nd Ed. New York: Plenum Press: 1995.
41. Steyer JA, Horstmann H, Almers W: Transport, docking and exocytosis of single secretory granules in live chromaffin cells. Nature 1997, 388:474-478.
42. Borisenko V, Loughseed T, Hesse J, Füreder-Kitzmüller E, Fertig N, Behrends JC, Woolley GA, Schültz GJ: Simultaneous optical and electrical recording of single gramicidin channels. Biophys J 2003, 84:612-622.