메뉴 건너뛰기




Volumn 5, Issue 1, 2003, Pages 52-61

HIV sequence databases

Author keywords

Analysis; Database; Evolution; Genetic sequences; HIV; Resistance

Indexed keywords

ANTIRETROVIRUS AGENT; CHEMOKINE RECEPTOR CCR2; CHEMOKINE RECEPTOR CCR3; CHEMOKINE RECEPTOR CCR4; CHEMOKINE RECEPTOR CCR5; DNA; ENFUVIRTIDE; GLYCOPROTEIN GP 41; HUMAN IMMUNODEFICIENCY VIRUS VACCINE; NELFINAVIR; PROTEINASE; PROTEINASE INHIBITOR; RITONAVIR; RNA; RNA DIRECTED DNA POLYMERASE; RNA DIRECTED DNA POLYMERASE INHIBITOR; SAQUINAVIR; STAVUDINE; ZALCITABINE;

EID: 0037622956     PISSN: 11396121     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (151)

References (41)
  • 1
    • 0002133523 scopus 로고    scopus 로고
    • Intersubtype recombinant HIV-1 sequences
    • In: Korber B, Hahn B, Foley B, et al. (eds); Los Alamos: Los Alamos National Laboratory
    • Robertson D, Gao F, Hahn HB, Sharp P. Intersubtype recombinant HIV-1 sequences. In: Korber B, Hahn B, Foley B, et al. (eds). Human Retroviruses and AIDS 1997. Los Alamos: Los Alamos National Laboratory 1997.
    • (1997) Human Retroviruses and AIDS 1997
    • Robertson, D.1    Gao, F.2    Hahn, H.B.3    Sharp, P.4
  • 2
    • 0037992250 scopus 로고    scopus 로고
    • Sequence quality control
    • In: Korber B, Kuiken CL, Foley B, et al. (eds); Los Alamos: Los Alamos National Laboratory
    • Kuiken C, Korber B. Sequence quality control. In: Korber B, Kuiken CL, Foley B, et al. (eds). Human Retroviruses and AIDS 1998. Los Alamos: Los Alamos National Laboratory 1998.
    • (1998) Human Retroviruses and AIDS 1998
    • Kuiken, C.1    Korber, B.2
  • 3
    • 0028884471 scopus 로고
    • A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences
    • Siepel A, Halpern A, Macken C, Korber B. A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences. AIDS Res Hum Retroviruses 1995;11:1413-6.
    • (1995) AIDS Res Hum Retroviruses , vol.11 , pp. 1413-1416
    • Siepel, A.1    Halpern, A.2    Macken, C.3    Korber, B.4
  • 4
    • 0001720445 scopus 로고    scopus 로고
    • Numbering positions in HIV relative to HXB2CG
    • In: Korber B, Kuiken C, Foley B, et al. (eds); Los Alamos: Los Alamos National Laboratory
    • Korber B, Foley B, Kuiken C, Pillai S, Sodroski J. Numbering positions in HIV relative to HXB2CG. In: Korber B, Kuiken C, Foley B, et al. (eds). Human Retroviruses and AIDS. Los Alamos: Los Alamos National Laboratory 1998.
    • (1998) Human Retroviruses and AIDS
    • Korber, B.1    Foley, B.2    Kuiken, C.3    Pillai, S.4    Sodroski, J.5
  • 6
    • 0012679612 scopus 로고    scopus 로고
    • Mutations in retroviral genes associated with drug resistance
    • In: Kuiken C, Foley B, Hahn B, et al. (eds); Los Alamos, NM: Los Alamos National Laboratory
    • Parikh U, Hammond J, Calef C, Larder B, Schinazi R, Mellors J. Mutations in retroviral genes associated with drug resistance. In: Kuiken C, Foley B, Hahn B, et al. (eds). HIV Sequence Compendium. Los Alamos, NM: Los Alamos National Laboratory 2001.
    • (2001) HIV Sequence Compendium
    • Parikh, U.1    Hammond, J.2    Calef, C.3    Larder, B.4    Schinazi, R.5    Mellors, J.6
  • 7
    • 0003097421 scopus 로고    scopus 로고
    • An overview of HIV-1 coreceptor function and its inhibitors
    • In: Kuiken C, Foley B, Hahn B, et al. (eds); Los Alamos, NM: Los Alamos National Laboratory
    • Cormier E, Dragic T. An overview of HIV-1 coreceptor function and its inhibitors. In: Kuiken C, Foley B, Hahn B, et al. (eds). HIV Sequence Compendium. Los Alamos, NM: Los Alamos National Laboratory 2000.
    • (2000) HIV Sequence Compendium
    • Cormier, E.1    Dragic, T.2
  • 8
    • 0037189323 scopus 로고    scopus 로고
    • Diversity considerations in HIV-1 vaccine selection
    • Gaschen B, Taylor J, Yusim K, et al. Diversity considerations in HIV-1 vaccine selection. Science 2002;296:2354-60.
    • (2002) Science , vol.296 , pp. 2354-2360
    • Gaschen, B.1    Taylor, J.2    Yusim, K.3
  • 9
    • 0029296148 scopus 로고
    • Fourth annual survey of worldwide HIV, SIV, and SHIV challenge studies in vaccinated nonhuman primates
    • Warren J, Levinson M. Fourth annual survey of worldwide HIV, SIV, and SHIV challenge studies in vaccinated nonhuman primates. J Med Primatol 1995;24:150-68.
    • (1995) J Med Primatol , vol.24 , pp. 150-168
    • Warren, J.1    Levinson, M.2
  • 11
    • 0034723385 scopus 로고    scopus 로고
    • AIDS as a zoonosis: Scientific and public health implications
    • Hahn B, Shaw G, De Cock K, Sharp P. AIDS as a zoonosis: Scientific and public health implications. Science 2000;287:607-14.
    • (2000) Science , vol.287 , pp. 607-614
    • Hahn, B.1    Shaw, G.2    De Cock, K.3    Sharp, P.4
  • 12
    • 0031001926 scopus 로고    scopus 로고
    • HIV-2 seroprevalence and characterization of a distinct HIV-2 genetic subtype from the natural range of simian immunodeficiency virus-infected sooty mangabeys
    • Chen Z, Luckay A, Sodora D, et al. HIV-2 seroprevalence and characterization of a distinct HIV-2 genetic subtype from the natural range of simian immunodeficiency virus-infected sooty mangabeys. J Virol 1997;71:3953-60.
    • (1997) J Virol , vol.71 , pp. 3953-3960
    • Chen, Z.1    Luckay, A.2    Sodora, D.3
  • 13
    • 9544220664 scopus 로고    scopus 로고
    • The heterosexual HIV type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin
    • Gao F, Robertson D, Morrison S, et al. The heterosexual HIV type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin. J Virol 1996;70:7013-29.
    • (1996) J Virol , vol.70 , pp. 7013-7029
    • Gao, F.1    Robertson, D.2    Morrison, S.3
  • 14
    • 0029840629 scopus 로고    scopus 로고
    • Full-length sequence and mosaic structure of a HIV type 1 isolated from Thailand
    • Carr J, Salminen M, Koch C, et al. Full-length sequence and mosaic structure of a HIV type 1 isolated from Thailand. J Virol 1996;70:5935-43.
    • (1996) J Virol , vol.70 , pp. 5935-5943
    • Carr, J.1    Salminen, M.2    Koch, C.3
  • 15
    • 0035004572 scopus 로고    scopus 로고
    • Retrieval and on-the-fly alignment of sequence fragments from the HIV database
    • Gaschen B, Kuiken C, Korber B, Foley B. Retrieval and on-the-fly alignment of sequence fragments from the HIV database. Bioinformatics 2001;17:415-8.
    • (2001) Bioinformatics , vol.17 , pp. 415-418
    • Gaschen, B.1    Kuiken, C.2    Korber, B.3    Foley, B.4
  • 16
    • 0031792828 scopus 로고    scopus 로고
    • Models of amino acid substitution and applications to mitochondrial protein evolution
    • Yang Z, Nielsen R, Hasegawa M. Models of amino acid substitution and applications to mitochondrial protein evolution. Mol Biol Evol 1998;15:1600-11.
    • (1998) Mol Biol Evol , vol.15 , pp. 1600-1611
    • Yang, Z.1    Nielsen, R.2    Hasegawa, M.3
  • 17
    • 0034124124 scopus 로고    scopus 로고
    • Detecting hypermutations in viral sequences with an emphasis on G → A hypermutation
    • Rose P, Korber B. Detecting hypermutations in viral sequences with an emphasis on G → A hypermutation. Bioinformatics 2000;16:400-1.
    • (2000) Bioinformatics , vol.16 , pp. 400-401
    • Rose, P.1    Korber, B.2
  • 18
    • 84886871700 scopus 로고    scopus 로고
    • Numbering positions in SIV relative to SIVMM239
    • In: Kuiken C, Foley B, Hahn B, et al. (eds); Los Alamos: Los Alamos National Laboratory
    • Calef C. Numbering positions in SIV relative to SIVMM239. In: Kuiken C, Foley B, Hahn B, et al. (eds). Human Retroviruses and AIDS. Los Alamos: Los Alamos National Laboratory 2001.
    • (2001) Human Retroviruses and AIDS
    • Calef, C.1
  • 19
    • 0026547387 scopus 로고
    • Sequence ordinations: A multivariate analysis approach to analysing large sequence data sets
    • Higgins D. Sequence ordinations: A multivariate analysis approach to analysing large sequence data sets. Comput Appl Biosci 1992;8:15-22.
    • (1992) Comput Appl Biosci , vol.8 , pp. 15-22
    • Higgins, D.1
  • 20
    • 0031214224 scopus 로고    scopus 로고
    • Tracking changes in HIV-1 envelope quasispecies using DNA heteroduplex analysis
    • Delwart E, Gordon C. Tracking changes in HIV-1 envelope quasispecies using DNA heteroduplex analysis. Methods 1997;12:348-54.
    • (1997) Methods , vol.12 , pp. 348-354
    • Delwart, E.1    Gordon, C.2
  • 21
    • 0343183245 scopus 로고    scopus 로고
    • Antiretroviral drug resistance testing in adult HIV-1 infection: Recommendations of an International AIDS Society-USA Panel
    • Hirsch M, Brun-Vezinet F, D'Aquila R, et al. Antiretroviral drug resistance testing in adult HIV-1 infection: Recommendations of an International AIDS Society-USA Panel. JAMA 2000;283:2417-26.
    • (2000) JAMA , vol.283 , pp. 2417-2426
    • Hirsch, M.1    Brun-Vezinet, F.2    D'Aquila, R.3
  • 22
    • 0035280647 scopus 로고    scopus 로고
    • Phenotypic and genotypic resistance assays: Methodology, reliability, and interpretations
    • Demeter L, Haubrich R. Phenotypic and genotypic resistance assays: Methodology, reliability, and interpretations. J Acquir Immune Defic Syndr 2001;26(Suppl 1):3-9.
    • (2001) J Acquir Immune Defic Syndr , vol.26 , Issue.SUPPL. 1 , pp. 3-9
    • Demeter, L.1    Haubrich, R.2
  • 23
    • 0035280931 scopus 로고    scopus 로고
    • Clinical utility of resistance testing: Retrospective and prospective data supporting use and current recommendations
    • Haubrich R, Demeter L. Clinical utility of resistance testing: Retrospective and prospective data supporting use and current recommendations. J Acquir Immune Defic Syndr 2001;26(Suppl 1):51-9.
    • (2001) J Acquir Immune Defic Syndr , vol.26 , Issue.SUPPL. 1 , pp. 51-59
    • Haubrich, R.1    Demeter, L.2
  • 24
    • 0034785429 scopus 로고    scopus 로고
    • Mutational patterns in the HIV genome and cross-resistance following nucleoside and nucleotide analogue drug exposure
    • Miller V, Larder B. Mutational patterns in the HIV genome and cross-resistance following nucleoside and nucleotide analogue drug exposure. Antivir Ther 2001;6(Suppl 3):25-44.
    • (2001) Antivir Ther , vol.6 , Issue.SUPPL. 3 , pp. 25-44
    • Miller, V.1    Larder, B.2
  • 25
    • 0035280944 scopus 로고    scopus 로고
    • Resistance to protease inhibitors
    • Miller V. Resistance to protease inhibitors. J Acquir Immune Defic Syndr 2001;26(Suppl 1):34-50.
    • (2001) J Acquir Immune Defic Syndr , vol.26 , Issue.SUPPL. 1 , pp. 34-50
    • Miller, V.1
  • 26
    • 0035282512 scopus 로고    scopus 로고
    • Clinical use of genotypic and phenotypic drug resistance testing to monitor antiretroviral chemotherapy
    • Hanna G, D'Aquila R. Clinical use of genotypic and phenotypic drug resistance testing to monitor antiretroviral chemotherapy. Clin Infect Dis 2001;32:774-82.
    • (2001) Clin Infect Dis , vol.32 , pp. 774-782
    • Hanna, G.1    D'Aquila, R.2
  • 27
    • 0036222716 scopus 로고    scopus 로고
    • Genotypic testing for HIV type 1 drug resistance
    • Shafer R. Genotypic testing for HIV type 1 drug resistance. Clin Microbiol Rev 2002;15:247-77.
    • (2002) Clin Microbiol Rev , vol.15 , pp. 247-277
    • Shafer, R.1
  • 28
    • 0035173377 scopus 로고    scopus 로고
    • HIV reverse transcriptase and protease sequence database: An expanded model integrating natural language text and sequence analysis
    • Kantor R, Machekano R, Gonzales M, Dupnik B, Schapiro J, Shafer R. HIV reverse transcriptase and protease sequence database: An expanded model integrating natural language text and sequence analysis. Nucleic Acids Res 2001;29:296-9.
    • (2001) Nucleic Acids Res , vol.29 , pp. 296-299
    • Kantor, R.1    Machekano, R.2    Gonzales, M.3    Dupnik, B.4    Schapiro, J.5    Shafer, R.6
  • 29
    • 0036300763 scopus 로고    scopus 로고
    • Synonymous-non-synonymous mutation rates between sequences containing amibiguous nucleotides (Syn-SCAN)
    • Gonzales M, Dugan J, Shafer R. Synonymous-non-synonymous mutation rates between sequences containing amibiguous nucleotides (Syn-SCAN). Bioinformatics 2002;18:886-7.
    • (2002) Bioinformatics , vol.18 , pp. 886-887
    • Gonzales, M.1    Dugan, J.2    Shafer, R.3
  • 30
    • 0033678531 scopus 로고    scopus 로고
    • HIV type 1 reverse transcriptase and protease mutation search engine for queries
    • Shafer R, Jung D, Betts B. HIV type 1 reverse transcriptase and protease mutation search engine for queries. Nat Med 2000;6:1290-2.
    • (2000) Nat Med , vol.6 , pp. 1290-1292
    • Shafer, R.1    Jung, D.2    Betts, B.3
  • 31
    • 0031729823 scopus 로고    scopus 로고
    • Potent suppression of HIV-1 replication in humans by T-20, a peptide inhibitor of gp41-mediated virus entry
    • Kilby J, Hopkins S, Venetta T, et al. Potent suppression of HIV-1 replication in humans by T-20, a peptide inhibitor of gp41-mediated virus entry. Nat Med 1998;4:1302-7.
    • (1998) Nat Med , vol.4 , pp. 1302-1307
    • Kilby, J.1    Hopkins, S.2    Venetta, T.3
  • 32
    • 0037654419 scopus 로고    scopus 로고
    • Enfuvirtide (T-20) in combination with an optimized background (OB) regimen vs. OB alone in patients with prior experience or resistance to each of the three classes of approved antiretrovirals in Europe and Australia
    • [LbOr19A]
    • Clotet B, Lazzarin A, Cooper D, et al. Enfuvirtide (T-20) in combination with an optimized background (OB) regimen vs. OB alone in patients with prior experience or resistance to each of the three classes of approved antiretrovirals in Europe and Australia. World AIDS Conference. Barcelona 2002 [LbOr19A].
    • World AIDS Conference. Barcelona 2002
    • Clotet, B.1    Lazzarin, A.2    Cooper, D.3
  • 33
    • 0038330059 scopus 로고    scopus 로고
    • Enfuvirtide (T-20) in combination with an optimized background (OB) regimen vs. OB alone in patients with prior experience or resistance to each of the three drug classes of approved antiretrovirals in North America and Brazil
    • [LbOr19B]
    • Henry K, Lalezari J, O'Hearn M, et al. Enfuvirdie (T-20) in combination with an optimized background (OB) regimen vs. OB alone in patients with prior experience or resistance to each of the three drug classes of approved antiretrovirals in North America and Brazil. World AIDS Conference. Barcelona 2002 [LbOr19B].
    • World AIDS Conference. Barcelona 2002
    • Henry, K.1    Lalezari, J.2    O'Hearn, M.3
  • 34
    • 0038330058 scopus 로고    scopus 로고
    • Influence of subtype and treatment on genetic profiles for HIV-1 reverse transcriptase and protease: Do they act independently in predicting mutation specific probabilities in non-subtype B sequences
    • Kantor R, Katzenstein D, Gonzales M, et al. Influence of subtype and treatment on genetic profiles for HIV-1 reverse transcriptase and protease: Do they act independently in predicting mutation specific probabilities in non-subtype B sequences. Antivir Ther 2002;7(Suppl):142.
    • (2002) Antivir Ther , vol.7 , Issue.SUPPL. , pp. 142
    • Kantor, R.1    Katzenstein, D.2    Gonzales, M.3
  • 35
    • 0035810577 scopus 로고    scopus 로고
    • Analysis of prevalence of HIV-1 drug resistance in primary infections in the United Kingdom
    • UK Collaborative Group on Monitoring the Transmission of HIV Drug Resistance. Analysis of prevalence of HIV-1 drug resistance in primary infections in the United Kingdom. BMJ 2001;322:1087-8.
    • (2001) BMJ , vol.322 , pp. 1087-1088
  • 36
    • 0037178323 scopus 로고    scopus 로고
    • Evolving patterns of HIV-1 resistance to antiretroviral agents in newly infected individuals
    • Simon V, Vanderhoeven J, Hurley A, et al. Evolving patterns of HIV-1 resistance to antiretroviral agents in newly infected individuals. AIDS 2002;16:1511-9.
    • (2002) AIDS , vol.16 , pp. 1511-1519
    • Simon, V.1    Vanderhoeven, J.2    Hurley, A.3
  • 37
    • 0037055016 scopus 로고    scopus 로고
    • Time trends in primary HIV-1 drug resistance among recently infected persons
    • Grant R, Hecht F, Warmerdam M, et al. Time trends in primary HIV-1 drug resistance among recently infected persons. JAMA 2002;288:181-8.
    • (2002) JAMA , vol.288 , pp. 181-188
    • Grant, R.1    Hecht, F.2    Warmerdam, M.3
  • 38
    • 0037043652 scopus 로고    scopus 로고
    • Antiretroviral drug resistance among patients recently infected with HIV
    • Little S, Holte S, Routy J, et al. Antiretroviral drug resistance among patients recently infected with HIV. N Engl J Med 2002;347:385-94.
    • (2002) N Engl J Med , vol.347 , pp. 385-394
    • Little, S.1    Holte, S.2    Routy, J.3
  • 39
    • 0035887670 scopus 로고    scopus 로고
    • HIV type 1 reverse transcriptase and protease subtypes: Classification, amino acid mutation patterns, and prevalence in a northern California clinic-based population
    • Gonzales MJ, Machekano R, Shafer R. HIV type 1 reverse transcriptase and protease subtypes: Classification, amino acid mutation patterns, and prevalence in a northern California clinic-based population. J Infect Dis 2001;184:998-1006.
    • (2001) J Infect Dis , vol.184 , pp. 998-1006
    • Gonzales, M.J.1    Machekano, R.2    Shafer, R.3
  • 40
    • 0038668613 scopus 로고    scopus 로고
    • The uncommon HIV-1 protease mutation I54T is highly associated with G48V and may affect cleavage dynamics by stabilizing the structure of the flaps
    • Schiffer C, Scott W, Stewart F, King M, Kempf D. The uncommon HIV-1 protease mutation I54T is highly associated with G48V and may affect cleavage dynamics by stabilizing the structure of the flaps. Antivir Ther 2001;6(Suppl 1):52.
    • (2001) Antivir Ther , vol.6 , Issue.SUPPL. 1 , pp. 52
    • Schiffer, C.1    Scott, W.2    Stewart, F.3    King, M.4    Kempf, D.5
  • 41
    • 0034913593 scopus 로고    scopus 로고
    • Variants other than aspartic acid at codon 69 of the HIV type 1 reverse transcriptase gene affect susceptibility to nucleoside analogs
    • Winters M, Merigan T. Variants other than aspartic acid at codon 69 of the HIV type 1 reverse transcriptase gene affect susceptibility to nucleoside analogs. Antimicrob Agents Chemother 2001;45:2276-9.
    • (2001) Antimicrob Agents Chemother , vol.45 , pp. 2276-2279
    • Winters, M.1    Merigan, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.