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Volumn 43, Issue 3, 2003, Pages 1077-1084

Prediction of aqueous solubility and partition coefficient optimized by a genetic algorithm based descriptor selection method

Author keywords

[No Author keywords available]

Indexed keywords

AQUEOUS SOLUBILITY;

EID: 0037498037     PISSN: 00952338     EISSN: None     Source Type: Journal    
DOI: 10.1021/ci034006u     Document Type: Article
Times cited : (107)

References (53)
  • 1
    • 0035438386 scopus 로고    scopus 로고
    • Toward an optimal procedure for variable selection and QSAR model building
    • Yasri, A.; Hartsough, D. Toward an Optimal Procedure for Variable Selection and QSAR Model Building. J. Chem. Inf. Comput. Sci. 2001, 41, 1218-1227.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 1218-1227
    • Yasri, A.1    Hartsough, D.2
  • 2
    • 0034597582 scopus 로고    scopus 로고
    • 2D QSAR modeling and preliminary database searching for dopamine transporter inhibitors using genetic algorithm variable selection of Molconn Z descriptors
    • Huffman, B. T.; Kopajtic, T.; Katz, J. L.; Newman, A. H. 2D QSAR Modeling and Preliminary Database Searching for Dopamine Transporter Inhibitors Using Genetic Algorithm Variable Selection of Molconn Z Descriptors. J. Med. Chem. 2000, 43, 4151-4159.
    • (2000) J. Med. Chem. , vol.43 , pp. 4151-4159
    • Huffman, B.T.1    Kopajtic, T.2    Katz, J.L.3    Newman, A.H.4
  • 3
    • 0039700206 scopus 로고    scopus 로고
    • Identification of a preferred set of molecular descriptors for compound classification based on principal component analysis
    • Xue, L.; Godden, J.; Gao, H.; Bajorath, J. Identification of a Preferred Set of Molecular Descriptors for Compound Classification Based on Principal Component Analysis. J. Chem. Inf. Comput. Sci. 1999, 39, 669-704.
    • (1999) J. Chem. Inf. Comput. Sci. , vol.39 , pp. 669-704
    • Xue, L.1    Godden, J.2    Gao, H.3    Bajorath, J.4
  • 4
    • 0034181655 scopus 로고    scopus 로고
    • Molecular descriptors for effective classification of biologically active compounds based on principal component analysis identified by a genetic algorithm
    • Xue, L.; Bajorath, J. Molecular Descriptors for Effective Classification of Biologically Active Compounds Based on Principal Component Analysis Identified by a Genetic Algorithm. J. Chem. Inf. Comput. Sci. 2000, 40, 801-809.
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 801-809
    • Xue, L.1    Bajorath, J.2
  • 5
    • 0002483594 scopus 로고    scopus 로고
    • Multivariate regression outperforms several robust architectures of neural networks in QSAR modeling
    • Luçić, B.; Trinajstic, N. Multivariate Regression Outperforms Several Robust Architectures of Neural Networks in QSAR Modeling. J. Chem. Inf. Comput. Sci. 2001, 41, 121-132.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 121-132
    • Luçić, B.1    Trinajstic, N.2
  • 6
    • 0342645323 scopus 로고    scopus 로고
    • Use of structure-activity data to compare structure-based clustering methods and descriptors for use in compound selection
    • Brown, R. D.; Martin, Y. C. Use of Structure-Activity Data To Compare Structure-Based Clustering Methods and Descriptors for Use in Compound Selection. J. Chem. Inf. Comput. Sci. 1996, 36, 572-584.
    • (1996) J. Chem. Inf. Comput. Sci. , vol.36 , pp. 572-584
    • Brown, R.D.1    Martin, Y.C.2
  • 7
    • 0029783934 scopus 로고    scopus 로고
    • Neighborhood behavior: A Useful concept for validation of molecular diversity descriptors
    • Patterson, D. E.; Cramer, R. D.; Ferguson, A. M.; Clark, R. D.; Weinberger, L. E. Neighborhood Behavior: A Useful Concept for Validation of Molecular Diversity Descriptors. J. Med. Chem. 1996, 39, 3049-3059.
    • (1996) J. Med. Chem. , vol.39 , pp. 3049-3059
    • Patterson, D.E.1    Cramer, R.D.2    Ferguson, A.M.3    Clark, R.D.4    Weinberger, L.E.5
  • 8
    • 0032234687 scopus 로고    scopus 로고
    • Advances in diversity profiling and combinatorial series design
    • Agrafiotis, D. K.; Myslik, J. C.; Salemme, F. R. Advances in diversity profiling and combinatorial series design. Molecular Diversity 1999, 4, 1-22.
    • (1999) Molecular Diversity , vol.4 , pp. 1-22
    • Agrafiotis, D.K.1    Myslik, J.C.2    Salemme, F.R.3
  • 9
    • 0030815955 scopus 로고    scopus 로고
    • Designing combinatorial library mixtures using a genetic algorithm
    • Brown, R. D.; Martin, Y. C. Designing Combinatorial Library Mixtures Using a Genetic Algorithm. J. Med. Chem. 1997, 40, 2304-2313.
    • (1997) J. Med. Chem. , vol.40 , pp. 2304-2313
    • Brown, R.D.1    Martin, Y.C.2
  • 10
    • 0000892020 scopus 로고    scopus 로고
    • Clustering of large databases of compounds: Using the MDL keys as structural descriptors
    • McGregor, M. J.; Pallai, P. V. Clustering of Large Databases of Compounds: Using the MDL Keys as Structural Descriptors. J. Chem. Inf. Comput. Sci. 1997, 37, 443-448.
    • (1997) J. Chem. Inf. Comput. Sci. , vol.37 , pp. 443-448
    • McGregor, M.J.1    Pallai, P.V.2
  • 11
    • 0030943408 scopus 로고    scopus 로고
    • Selecting optimally diverse compounds from structure databases: A validation study of two-dimensional and three-dimensional molecular descriptors
    • Matter, H. Selecting Optimally Diverse Compounds from Structure Databases: A Validation Study of Two-Dimensional and Three-Dimensional Molecular Descriptors. J. Med. Chem. 1997, 40, 1219-1229.
    • (1997) J. Med. Chem. , vol.40 , pp. 1219-1229
    • Matter, H.1
  • 12
    • 0001027028 scopus 로고    scopus 로고
    • Comparing 3D pharmacophore triplets and 2D fingerprints for selecting diverse compound subsets
    • Matter, H.; Pötter, T. Comparing 3D Pharmacophore Triplets and 2D Fingerprints for Selecting Diverse Compound Subsets. J. Chem. Inf. Comput. Sci. 1999, 39, 1211-1225.
    • (1999) J. Chem. Inf. Comput. Sci. , vol.39 , pp. 1211-1225
    • Matter, H.1    Pötter, T.2
  • 13
    • 0033217466 scopus 로고    scopus 로고
    • Analysis of a large structure/biological activity data set using recursive partitioning
    • Rusinko, A.; Farmen, M. W.; Lambert, C. G.; Brown, P. L.; Young, S. S. Analysis of a Large Structure/Biological Activity Data Set Using Recursive Partitioning. J. Chem. Inf. Comput. Sci. 1999, 39, 1017-1026.
    • (1999) J. Chem. Inf. Comput. Sci. , vol.39 , pp. 1017-1026
    • Rusinko, A.1    Farmen, M.W.2    Lambert, C.G.3    Brown, P.L.4    Young, S.S.5
  • 15
    • 0018927965 scopus 로고
    • Water solubility and octanol/water partition coeffcients of organics. Limitations of the solubility-partition coeffcient correlation
    • Banerjee, S.; Yalkowsky, S. H.; Valvani, S. C. Water Solubility and Octanol/Water Partition Coeffcients of Organics. Limitations of the Solubility-Partition Coeffcient Correlation. Environ. Sci. Technol. 1980, 14, 1227-1229.
    • (1980) Environ. Sci. Technol. , vol.14 , pp. 1227-1229
    • Banerjee, S.1    Yalkowsky, S.H.2    Valvani, S.C.3
  • 18
    • 0001645890 scopus 로고    scopus 로고
    • Estimation of aqueous solubility for a diverse set of organic compounds based on molecular topology
    • Huuskonen, J. Estimation of Aqueous Solubility for a Diverse Set of Organic Compounds Based on Molecular Topology. J. Chem. Inf. Comput. Sci. 2000, 40, 773-777.
    • (2000) J. Chem. Inf. Comput. Sci. , vol.40 , pp. 773-777
    • Huuskonen, J.1
  • 19
    • 0032061266 scopus 로고    scopus 로고
    • Aqueous solubility prediction of drugs based on molecular topology and neural network modeling
    • Huuskonen, J.; Salo, M.; Taskinen, J. Aqueous Solubility Prediction of Drugs Based on Molecular Topology and Neural Network Modeling. J. Chem. Inf. Comput. Sci. 1998, 38, 450-456.
    • (1998) J. Chem. Inf. Comput. Sci. , vol.38 , pp. 450-456
    • Huuskonen, J.1    Salo, M.2    Taskinen, J.3
  • 20
    • 0035526162 scopus 로고    scopus 로고
    • Estimation of aqueous solubility of chemical compounds using e-state indices
    • Tetko, I. V.; Tanchuk, V. Y.; Kasheva, T. N.; Villa, A. E. P. Estimation of Aqueous Solubility of Chemical Compounds Using E-State Indices. J. Chem. Inf. Comput. Sci. 2001, 41, 1488-1493.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 1488-1493
    • Tetko, I.V.1    Tanchuk, V.Y.2    Kasheva, T.N.3    Villa, A.E.P.4
  • 21
    • 0037361981 scopus 로고    scopus 로고
    • Prediction of aqueous solubility of organic compounds based on a 3D structure representation
    • Yan, A.; Gasteiger, J. Prediction of Aqueous Solubility of Organic Compounds Based on a 3D Structure Representation. J. Chem. Inf. Comput. Sci. 2003, 43, 429-434.
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 429-434
    • Yan, A.1    Gasteiger, J.2
  • 22
    • 0035498340 scopus 로고    scopus 로고
    • Development of quantitative structure - Property relationship models for early ADME evaluation in drug discovery. 1. Aqueous solubility
    • Liu, R.; So, S. S. Development of Quantitative Structure - Property Relationship Models for Early ADME Evaluation in Drug Discovery. 1. Aqueous Solubility, J. Chem. Inf. Comput. Sci. 2001, 41, 1633-1639.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 1633-1639
    • Liu, R.1    So, S.S.2
  • 23
    • 0034751673 scopus 로고    scopus 로고
    • Simultaneous prediction of aqueous solubility and octanl/water partition coefficient based on descriptors derived from molecular structure
    • Livingstone, D. J.; Ford, M. G.; Huuskonen, J. J.; Salt, D. W. Simultaneous prediction of aqueous solubility and octanl/water partition coefficient based on descriptors derived from molecular structure. J. Comput.-Aid. Mol. Des. 2001, 15, 741-752.
    • (2001) J. Comput.-Aid. Mol. Des. , vol.15 , pp. 741-752
    • Livingstone, D.J.1    Ford, M.G.2    Huuskonen, J.J.3    Salt, D.W.4
  • 24
    • 0023965741 scopus 로고
    • SMILES a chemical language for information systems. 1. Introduction to methodology and encoding rules
    • Weinenger, D. SMILES: a Chemical Language for Information Systems. 1. Introduction to Methodology and Encoding Rules. J. Chem. Inf. Comput. Sci. 1988, 28, 31-36.
    • (1988) J. Chem. Inf. Comput. Sci. , vol.28 , pp. 31-36
    • Weinenger, D.1
  • 25
    • 0024664539 scopus 로고
    • SMILES 2: Algorithm for generation of unique SMILES notation
    • Weinenger, D. SMILES 2: Algorithm for Generation of Unique SMILES Notation. J. Chem. Inf. Comput. Sci. 1989, 29, 97-101.
    • (1989) J. Chem. Inf. Comput. Sci. , vol.29 , pp. 97-101
    • Weinenger, D.1
  • 26
    • 0038494448 scopus 로고    scopus 로고
    • MDL information systems
    • MDL Information Systems. MDL CT file Formats.
    • MDL CT File Formats
  • 27
    • 0038494449 scopus 로고    scopus 로고
    • JOELib, http://joelib.sourceforge.net/.
  • 28
    • 0037818192 scopus 로고    scopus 로고
    • OELib, http://www.eyesopen.com/oelib/.
  • 29
    • 0000262640 scopus 로고    scopus 로고
    • A new atom-additive method for calculating partition coeffcients
    • Wang, R.; Fu, Y.; Lai, L. A New Atom-Additive Method for Calculating Partition Coeffcients. J. Chem. Inf. Comput. Sci. 1997, 37, 615-621.
    • (1997) J. Chem. Inf. Comput. Sci. , vol.37 , pp. 615-621
    • Wang, R.1    Fu, Y.2    Lai, L.3
  • 30
    • 0033820007 scopus 로고    scopus 로고
    • Calculating partition coeffcient by atom-additive method
    • Wang, R.; Gao, Y.; Lai, L. Calculating partition coeffcient by atom-additive method. Perspectives Drug Discovery Design 2000, 19, 47-66.
    • (2000) Perspectives Drug Discovery Design , vol.19 , pp. 47-66
    • Wang, R.1    Gao, Y.2    Lai, L.3
  • 34
    • 0000125764 scopus 로고
    • A new model for calculating atomic charges in molecules
    • Gasteiger, J.; Marsili, M. A New Model for Calculating Atomic Charges in Molecules. Tetrahedron Lett. 1978, 3181-3184.
    • (1978) Tetrahedron Lett. , pp. 3181-3184
    • Gasteiger, J.1    Marsili, M.2
  • 35
    • 0013105051 scopus 로고    scopus 로고
    • ESCHER - A computer program for the determination of external rotational symmetry numbers from molecular topology
    • Walters, W. P.; Yalkowsky, S. H. ESCHER-A Computer Program for the Determination of External Rotational Symmetry Numbers from Molecular Topology. J. Chem. Inf. Comput. Sci. 1996, 36, 1015-1017.
    • (1996) J. Chem. Inf. Comput. Sci. , vol.36 , pp. 1015-1017
    • Walters, W.P.1    Yalkowsky, S.H.2
  • 36
    • 0034268411 scopus 로고    scopus 로고
    • Distinguishing between natural products and synthetic molecules by descriptor Shannon entropy analysis and binary QSAR calculations
    • Stahura, F. L.; Godden, J. W.; Xue, L.; Bajorath, J. Distinguishing between Natural Products and Synthetic Molecules by Descriptor Shannon Entropy Analysis and Binary QSAR Calculations. J. Chem. Inf. Comput. Sci. 2001, 41, 1245-1252.
    • (2001) J. Chem. Inf. Comput. Sci , vol.41 , pp. 1245-1252
    • Stahura, F.L.1    Godden, J.W.2    Xue, L.3    Bajorath, J.4
  • 38
    • 0000709242 scopus 로고    scopus 로고
    • On the use of information theory for assessing molecular diversity
    • Agrafiotis, D. K. On the Use of Information Theory for Assessing Molecular Diversity. J. Chem. Inf. Comput. Sci. 1997, 37, 576-580.
    • (1997) J. Chem. Inf. Comput. Sci. , vol.37 , pp. 576-580
    • Agrafiotis, D.K.1
  • 39
    • 0035412802 scopus 로고    scopus 로고
    • Differential Shannon entropy as a sensitive measure of differences in database variability of molecular descriptors
    • Godden, J. W.; Bajorath, J. Differential Shannon Entropy as a Sensitive Measure of Differences in Database Variability of Molecular Descriptors. J. Chem. Inf. Comput. Sci. 2001, 41, 1060-1066.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 1060-1066
    • Godden, J.W.1    Bajorath, J.2
  • 40
    • 0036589152 scopus 로고    scopus 로고
    • Differential Shannon entropy analysis identifies molecular property descriptors that predict aqueous solubility of synthetic compounds with high accuracy in binary QSAR calculations
    • Stahura, F. L.; Godden, J. W.; Bajorath, J. Differential Shannon Entropy Analysis Identifies Molecular Property Descriptors that Predict Aqueous Solubility of Synthetic Compounds with High Accuracy in Binary QSAR Calculations. J. Chem. Inf. Comput. Sci. 2002, 42, 550-558.
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 550-558
    • Stahura, F.L.1    Godden, J.W.2    Bajorath, J.3
  • 42
    • 15844383852 scopus 로고    scopus 로고
    • Selecting combinatorial libraries to optimize diversity and physical properties
    • Gillet, V. J.; Willett, P.; Bradshaw, J.; Green, D. V. S. Selecting Combinatorial Libraries to Optimize Diversity and Physical Properties. J. Chem. Inf. Comput. Sci. 1999, 39, 169-177.
    • (1999) J. Chem. Inf. Comput. Sci. , vol.39 , pp. 169-177
    • Gillet, V.J.1    Willett, P.2    Bradshaw, J.3    Green, D.V.S.4
  • 43
    • 0002590155 scopus 로고    scopus 로고
    • The maximum clique problem
    • Du, D.-Z., Pardalos, P. M., Eds.; Kluwer Academic Publishers: Boston, MA
    • Bomze, I.; Budinich, M.; Pardalos, P.; Pelillo, M. The maximum clique problem. In Handbook of Combinatorial Optimization; Du, D.-Z., Pardalos, P. M., Eds.; Kluwer Academic Publishers: Boston, MA, 1999; Vol. 4.
    • (1999) Handbook of Combinatorial Optimization , vol.4
    • Bomze, I.1    Budinich, M.2    Pardalos, P.3    Pelillo, M.4
  • 44
    • 84976668743 scopus 로고
    • Finding all cliques of an undirected graph
    • Bron, C.; Kerbosch, J. Finding all cliques of an undirected graph. Comm. ACM 1973, 16, 575-577.
    • (1973) Comm. ACM , vol.16 , pp. 575-577
    • Bron, C.1    Kerbosch, J.2
  • 46
  • 51
    • 0028266406 scopus 로고
    • Comparison of reliability of logP values for drugs calculated by several methods
    • Moriguchi, I.; Hirono, S.; Nakagome, I. Matsushita, Y. Comparison of Reliability of logP Values for Drugs Calculated by Several Methods. Chem. Pharm. Bull. 1994, 42, 976-978.
    • (1994) Chem. Pharm. Bull. , vol.42 , pp. 976-978
    • Moriguchi, I.1    Hirono, S.2    Nakagome, I.3    Matsushita, Y.4
  • 52
    • 0027325507 scopus 로고
    • On the reliability of calculated log P-values: Rekker, Hansch/Leo and Suzuki approach
    • Rekker, R. F.; Laak, A. M. On the Reliability of Calculated Log P-values: Rekker, Hansch/Leo and Suzuki Approach. Quant. Struct.-Act. Relat. 1993, 12, 152-157.
    • (1993) Quant. Struct.-Act. Relat. , vol.12 , pp. 152-157
    • Rekker, R.F.1    Laak, A.M.2
  • 53
    • 0025439652 scopus 로고
    • Automatic log P estimation based on combined additive modeling methods
    • Suzuki, T.; Kudo, Y. Automatic log P estimation based on combined additive modeling methods J. Comput. Aided Mol. Des. 1990, 4, 155-198.
    • (1990) J. Comput. Aided Mol. Des. , vol.4 , pp. 155-198
    • Suzuki, T.1    Kudo, Y.2


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