New biochip technology for label-free detection of pathogens and their toxins

Journal of Microbiological Methods

Volumn 53, Issue 2, 2003, Pages 221-233

  Grow, Ann E ^a   Wood, Laurie L ^a   Claycomb, Johanna L ^a   Thompson, Peggy A ^a  

^a Biopraxis Inc   (United States)

Author keywords

Bacteria; Biochip; Oocysts; Spores; Surface enhanced Raman scattering (SERS); Toxins

Indexed keywords

AFLATOXIN B1; AFLATOXIN G1; BACTERIAL TOXIN;

BACILLUS; BACTERIAL VIRULENCE; BACTERIUM DETECTION; CROSS REACTION; CRYPTOSPORIDIUM; LEGIONELLA; LISTERIA; NONHUMAN; OOCYTE; PHENOTYPE; PRIORITY JOURNAL; RAMAN SPECTROMETRY; REVIEW; SENSITIVITY AND SPECIFICITY; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); CRYPTOSPORIDIUM; LEGIONELLA; LISTERIA; NEGIBACTERIA; POSIBACTERIA;

EID: 0037401054     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(03)00026-5     Document Type: Review

References (82)

1. Alekseev A.N., Karabanova L.N., Krainova O.A., Krasov E.S., Kashparova E.V. Amino acid and mineral element content and the activity of various enzymes in germinating spores of Bacillus thuringiensis. Mikrobiologiia. 54(2):1985;181-185.
2. Anderson B.C. Effect of drying on the infectivity of cryptosporidia-laden calf feces for 3- to 7-day-old mice. Am. J. Vet. Res. 47(10):1986;2272-2273.
3. Bach S., Buchrieser C., Prentice M., Guiyoule A., Msadek T., Carniel E. The high-pathogenicity island of Yersinia enterocolitica Ye8081 undergoes low-frequency deletion but not precise excision, suggesting recent stabilization in the genome. Infect. Immun. 67(10):1999;5091-5099.
4. Baek M., Nelson W.H., Britt D., Sperry J.F. UV-excited resonance Raman spectra of heat denatured lysozyme and Staphylococcus epidermidis. Appl. Spectrosc. 42(7):1988;1312-1314.
5. Barker J., Lambert P.A., Brown M.R. Influence of intra-amoebic and other growth conditions on the surface properties of Legionella pneumophila. Infect. Immun. 61(8):1993;3503-3510.
6. Basher H.A., Fowler D.R., Rodgers F.G., Seaman A., Woodbine M. Role of haemolysin and temperature in the pathogenesis of Listeria monocytogenes in fertile hens' eggs. Zentralbl. Bakteriol., Mikrobiol. Hyg., Ser. A. 258(2-3):1984;223-231.
7. Beaman T.C., Gerhardt P. Heat resistance of bacterial spores correlated with protoplast dehydration, mineralization, and thermal adaptation. Appl. Environ. Microbiol. 52:1986;1242-1246.
8. Beaman T.C., Koshikawa T., Pankratz H.S., Gerhardt P. Dehydration partitioned within core protoplast accounts for heat resistance of bacterial spores. FEMS Microbiol. Lett. 24:1984;47-51.
9. Bekhtereva M.N., Marchenko I.V., Galanina L.A., Loginova O.N. Change in Bacillus anthracoides spores and their content of dipicolinic acid during germination. Mikrobiologiia. 44(2):1975;233-236.
10. Belosevic M., Craik S.A., Stafford J.L., Neumann N.F., Kruithof J., Smith D.W. Studies on the resistance/reactivation of Giardia muris cysts and Cryptosporidium parvum oocysts exposed to medium-pressure ultraviolet radiation. FEMS Microbiol. Lett. 204(1):2001;197-203.
11. Boschwitz H., Gofshtein-Gandman L., Halvorson H.O., Keynan A., Milner Y. The possible involvement of trypsin-like enzymes in germination of spores of Bacillus cereus T and Bacillus subtilis 168. J. Gen. Microbiol. 137(Pt. 5):1991;1145-1153.
12. Byrne B., Swanson M.S. Expression of Legionella pneumophila virulence traits in response to growth conditions. Infect. Immun. 66(7):1998;3029-3034.
13. Cazemier A.E., Wagenaars S.F.M., ter Steeg P.F. Effect of sporulation and recovery medium on the heat resistance and amount of injury of spores from spoilage bacilli. J. Appl. Microbiol. 90:2001;761-770.
14. Cowart R.E., Lashmet J., McIntosh M.E., Adams T.J. Adherence of a virulent strain of Listeria monocytogenes to the surface of a hepatocarcinoma cell line via lectin-substrate interaction. Arch. Microbiol. 153(3):1990;282-286.
15. Czuprynski C.J., Brown J.F., Roll J.T. Growth at reduced temperatures increases the virulence of Listeria monocytogenes for intravenously but not intragastrically inoculated mice. Microb. Pathog. 7(3):1989;213-223.
16. Dai J.H., Lee Y.S., Wong H.C. Effects of iron limitation on production of a siderophore, outer membrane proteins, and hemolysin and on hydrophobicity, cell adherence, and lethality for mice of Vibrio parahaemolyticus. Infect. Immun. 60(7):1992;2952-2956.
17. de Almeida A.M., Guiyoule A., Guilvout I., Iteman I., Baranton G., Carniel E. Chromosomal irp2 gene in Yersinia: distribution, expression, deletion and impact on virulence. Microb. Pathog. 14(1):1993;9-21.
18. Deng M.Q., Cliver D.O. Cryptosporidium parvum studies with dairy products. Int. J. Food Microbiol. 46(2):1999;113-121.
19. DeVerse R.A., Hammaker R.M., Fateley W.G., Graham J.A., Tate J.D. Spectrometry and imaging using a digital micromirror array. Am. Lab. 30(21):1998;113S-120S.
20. Durst J. The role of temperature factors in the epidemiology of listeriosis. Zentralbl. Bakteriol., Abt. 1, Orig., A. 233(1):1975;72-74.
21. Eichenbaum Z., Green B.D., Scott J.R. Iron starvation causes release from the group A streptococcus of the ADP-ribosylating protein called plasmin receptor or surface glyceraldehyde-3-phosphate-dehydrogenase. Infect. Immun. 64(6):1996;1956-1960.
22. Eissenberg L.G., Poirier S., Goldman W.E. Phenotypic variation and persistence of Histoplasma capsulatum yeasts in host cells. Infect. Immun. 64(12):1996;5310-5314.
23. Facinelli B., Giovanetti E., Magi G., Biavasco F., Varaldo P.E. Lectin reactivity and virulence among strains of Listeria monocytogenes determined in vitro using the enterocyte-like cell line Caco-2. Microbiology. 144(Pt. 1):1998;109-118.
24. Gilot P., Andre P., Content J. Listeria monocytogenes possesses adhesins for fibronectin. Infect. Immun. 67(12):1999;6698-6701.
25. Gilot P., Jossin Y., Content J. Cloning, sequencing and characterisation of a Listeria monocytogenes gene encoding a fibronectin-binding protein. J. Med. Microbiol. 49(10):2000;887-896.
26. Goldstein S.R., Kidder L.H., Herne T.M., Levin I.W., Lewis E.N. The design and implementation of a high-fidelity Raman imaging microscope. J. Microsc. 184(1):1996;35-45.
27. González I., López M., Matnez S., Bernardo A., González J. Thermal inactivation of Bacillus cereus spores formed at different temperatures. Int. J. Food Microbiol. 51:1999;81-84.
28. Grow, A.E., 1999. Raman optrode processes and devices for detection of chemicals and microorganisms. U.S. Patent No. 5,866,430.
29. Hacker J., Ott M., Wintermeyer E., Ludwig B., Fischer G. Analysis of virulence factors of Legionella pneumophila. Int. J. Med. Microbiol. Virol. Parasitol. Infect. Dis. 278(2-3):1993;348-358.
30. Helm D., Labischinski H., Schallehn G., Naumann D. Classification and identification of bacteria by Fourier transform infrared spectroscopy. J. Gen. Microbiol. 137:1991;69-79.
31. Holt C., Hirst D., Sutherland A., MacDonald F. Discrimination of species in the genus Listeria by Fourier transform infrared spectroscopy and canonical variate analysis. Appl. Environ. Microbiol. 61(1):1995;377-378.
32. James B.W., Mauchline W.S., Fitzgeorge R.B., Dennis P.J., Keevil C.W. Influence of iron-limited continuous culture on physiology and virulence of Legionella pneumophila. Infect. Immun. 63(11):1995;4224-4230.
33. James B.W., Mauchline W.S., Dennis P.J., Keevil C.W. A study of iron acquisition mechanisms of Legionella pneumophila grown in chemostat culture. Curr. Microbiol. 34(4):1997;238-243.
34. Jøstensen J.P., Landfald B. Influence of growth conditions on fatty acid composition of a polyunsaturated-fatty-acid-producing Vibrio species. Arch. Microbiol. 165(5):1996;306-310.
35. Kapatral V., Olson J.W., Pepe J.C., Miller V.L., Minnich S.A. Temperature-dependent regulation of Yersinia enterocolitica Class III flagellar genes. Mol. Microbiol. 19(5):1996;1061-1071.
36. Kneipp K., Wang Y., Kneipp H., Perelman L.T., Itzkan I., Dasari R.R., Feld M.S. Single molecule detection using surface-enhanced Raman scattering. Phys. Rev. Lett. 78:1997;1667-1670.
37. Kneipp K., Kneipp H., Kartha V.B., Manoharan R., Deinum G., Itzkan I., Dasari R.R., Feld M.S. Detection and identification of a single DNA base molecule using surface-enhanced Raman scattering (SERS). Phys. Rev., E. 57:1998;. (Rapid Communication, R6281).
38. Kneipp K., Kneipp H., Manoharan R., Hanlon E.B., Itzkan I., Dasari R.R., Feld M.S. Extremely large enhancement factors in surface-enhanced Raman scattering for molecules on colloidal gold clusters. Appl. Spectrosc. 52:1998;1493.
39. Kneipp K., Kneipp H., Itzkan I., Dasari R.R., Feld M.S. Surface-enhanced non-linear Raman scattering at the single molecule level. Chem. Phys. 247:1999;155-162.
40. Kozuka S., Yasuda Y., Tochikubo K. Ultrastructural localization of dipicolinic acid in dormant spores of Bacillus subtilis by immunoelectron microscopy with colloidal gold particles. J. Bacteriol. 162(3):1985;1250-1254.
41. Leonard B.A., Woischnik M., Podbielski A. Production of stabilized virulence factor-negative variants by group A streptococci during stationary phase. Infect. Immun. 66(8):1998;3841-3847.
42. Linden K.G., Shin G., Sobsey M.D. Comparative effectiveness of UV wavelengths for the inactivation of Cryptosporidium parvum oocysts in water. Water Sci. Technol. 43(12):2001;171-174.
43. Litwin C.M., Calderwood S.B. Analysis of the complexity of gene regulation by fur in Vibrio cholerae. J. Bacteriol. 176(1):1994;240-248.
44. Lorenzo-Lorenzo M.J., Ares-Mazas M.E., Villacorta-Martinez de Maturana I., Duran-Oreiro D. Effect of ultraviolet disinfection of drinking water on the viability of Cryptosporidium parvum oocysts. J. Parasitol. 79(1):1993;67-70.
45. Magee J.T. Whole-organism fingerprinting. Goodfellow M., O'Donnell A.G. Handbook of New Bacterial Systematics. 1993;383-427 Academic Press, London.
46. Maquelin K., Choo-Smith L.-P., van Vreeswijk T., Endtz H.P., Smith B., Bennett R., Bruining H.A., Puppels G.J. Raman spectroscopic method for identification of clinically relevant microorganisms growing on solid culture medium. Anal. Chem. 72:2000;12-19.
47. Maresca B. Unraveling the secrets of Histoplasma capsulatum. A model to study morphogenic adaptation during parasite host/host interaction. Verh. - K. Acad. Geneeskd. Belg. 57(2):1995;133-156.
48. Marquis R.E., Bender G.R. Mineralisation and heat resistance of bacterial spores. J. Bacteriol. 161:1985;789-791.
49. Mauchline W.S., Araujo R., Wait R., Dowsett A.B., Dennis P.J., Keevil C.W. Physiology and morphology of Legionella pneumophila in continuous culture at low oxygen concentration. J. Gen. Microbiol. 138(Pt. 11):1992;2371-2380.
50. Mauchline W.S., James B.W., Fitzgeorge R.B., Dennis P.J., Keevil C.W. Growth temperature reversibly modulates the virulence of Legionella pneumophila. Infect. Immun. 62(7):1994;2995-2997.
51. McClain B.L., Hedderich H.G., Gift A.D., Zhang D., Jallad K.N., Haber K.S., Ma J., Ben-Amotz D. Fast chemical imaging. Spectroscopy. 15(9):2000;28-37.
52. McGovern V.P., Oliver J.D. Induction of cold-responsive proteins in Vibrio vulnificus. J. Bacteriol. 177(14):1995;4131-4133.
53. Miller V.L., Mekalanos J.J. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J. Bacteriol. 170(6):1988;2575-2583.
54. Morris H.R., Hoyt C.C., Treado P.J. Imaging spectrometers for fluorescence and Raman microscopy: acousto-optic and liquid crystal tunable filters. Appl. Spectrosc. 48(7):1994;857-866.
55. Naumann D., Helm D., Labischinski H. Microbiological characterizations by FT-IR spectroscopy. Nature. 351:1991;81-82.
56. Naumann D., Helm D., Labischinski H., Giesbrecht P. The characterization of microorganisms by Fourier-transform infrared spectroscopy (FT-IR). Nelson W.H. Modern Techniques for Rapid Microbiological Analysis. 1991;43-96 VCH, New York.
57. Naumann D., Keller S., Helm D., Schultz N.C., Schrader B. FT-IR spectroscopy and Raman spectroscopy are powerful analytical tools for the non-invasive characterization of intact microbial cells. J. Mol. Struct. 347:1995;399-406.
58. Nelson W.H., Manoharan R., Sperry J.F. UV resonance Raman studies of bacteria. Appl. Spectrosc. Rev. 27:1992;67-124.
59. Nie S., Emory S.R. Probing single molecules and single nanoparticles by surface-enhanced Raman scattering. Science. 275:1997;1102.
60. Palop A., Mañas P., Condón S. Sporulation temperature and heat resistance of Bacillus spores: a review. J. Food Saf. 19:1999;57-72.
61. Palop A., Sala F.J., Condón S. Heat resistance of native and demineralised spores of Bacillus subtilis sporulated at different temperatures. Appl. Environ. Microbiol. 65:1999;1316-1319.
62. Peel M., Donachie W., Shaw A. Temperature-dependent expression of flagella of Listeria monocytogenes studied by electron microscopy, SDS-PAGE and western blotting. J. Gen. Microbiol. 134(Pt. 8):1988;2171-2178.
63. Pettersson A., Poolman J.T., van der Ley P., Tommassen J. Response of Neisseria meningitidis to iron limitation. Antonie Van Leeuwenhoek. 71(1-2):1997;129-136.
64. Picard-Bonnaud F., Cottin J., Carbonnelle B. Preservation of the virulence of Listeria monocytogenes in different sorts of soil. Acta Microbiol. Hung. 36(2-3):1989;269-272.
65. Raso J., Barbosa-Cánovas G., Swanson B.G. Sporulation temperature affects initiation of germination and inactivation by high hydrostatic pressure of Bacillus cereus. J. Appl. Microbiol. 85:1998;17-24.
66. Robertson L.J., Campbell A.T., Smith H.V. Survival of Cryptosporidium parvum oocysts under various environmental pressures. Appl. Environ. Microbiol. 58(11):1992;3494-3500.
67. Samoilova S.V., Samoilova L.V., Yezhov I.N., Drozdov I.G., Anisimov A.P. Virulence of pPst+ and pPst- strains of Yersinia pestis for guinea-pigs. J. Med. Microbiol. 45(6):1996;440-444.
68. Schaeberle M.D., Morris H.R., Turner J.F. II, Treado P.J. Raman chemical imaging spectroscopy. Anal. Chem. 71(5):1999;175A-181A.
69. Schuster K.C., Urlaub E., Gapes J.R. Single-cell analysis of bacteria by Raman microscopy: spectral information on the chemical composition of cells and on the heterogeneity in a culture. J. Microbiol. Methods. 42:2000;29-38.
70. Scott I.R., Ellar D.J. Study of calcium dipicolinate release during bacterial spore germination by using a new, sensitive assay for dipicolinate. J. Bacteriol. 135(1):1978;133-137.
71. Seltmann G., Voigt W., Beer W. Application of physico-chemical typing methods for the epidemiological analysis of Salmonella enteritidis strains of phage type 25/17. Epidemiol. Infect. 113(3):1994;411-424.
72. Shibata H., Yamashita S., Ohe M., Tani I. Laser Raman spectroscopy of lyophilized bacterial spores. Microbiol. Immunol. 30(4):1986;307-313.
73. Simpson W.J., Cleary P.P. Expression of M type 12 protein by a group A streptococcus exhibits phaselike variation: evidence for coregulation of colony opacity determinants and M protein. Infect. Immun. 55(10):1987;2448-2455.
74. Stephens J.C., Roberts I.S., Jones D., Andrew P.W. Effect of growth temperature on virulence of strains of Listeria monocytogenes in the mouse: evidence for a dose dependence. J. Appl. Bacteriol. 70(3):1991;239-244.
75. Tamplin M.L., Jackson J.K., Buchrieser C., Murphree R.L., Portier K.M., Gangar V., Miller L.G., Kaspar C.W. Pulsed-field gel electrophoresis and ribotype profiles of clinical and environmental Vibrio vulnificus isolates. Appl. Environ. Microbiol. 62(10):1996;3572-3580.
76. Thuan B.P., Calderon de la Barca A.M., Buck G., Galsworthy S.B., Doyle R.J. Interactions between listeriae and lectins. Rom. Arch. Microbiol. Immunol. 59(1-2):2000;55-61.
77. Treado P.J., Levin I.W., Lewis E.N. High fidelity Raman imaging spectrometry: a rapid method using an acousto-optic tunable filter. Appl. Spectrosc. 46(4):1992;553-558.
78. Vogel U., Hammerschmidt S., Frosch M. Sialic acids of both the capsule and the sialylated lipooligosaccharide of Neisseria meningitis serogroup B are prerequisites for virulence of meningococci in the infant rat. Med. Microbiol. Immunol. (Berl.). 185(2):1996;81-87.
79. Williams O.B., Robertson W.J. Studies on heat resistance: VI. Effect of temperature of incubation at which formed on heat resistance of aerobic thermophilic spores. J. Bacteriol. 67:1954;377-378.
80. Williams K.P.J., Wilcock I.C., Hayward I.P., Whitley A. Applications of state-of-the-art Raman microscopy and direct Raman imaging. Spectroscopy. 11(3):1996;45-50.
81. Wright A.C., Simpson L.M., Oliver J.D., Morris J.G. Jr. Phenotypic evaluation of acapsular transposon mutants of Vibrio vulnificus. Infect. Immun. 58(6):1990;1769-1773.
82. Xu H., Bjerneld E.J., Kall M., Borjesson L. Spectroscopy of single hemoglobin molecules by surface enhanced Raman scattering. Phys. Rev. Lett. 83(21):1999;4357-4360.