RNA interference by production of short hairpin dsRNA in ES cells, their differentiated derivatives, and in somatic cell lines

BioTechniques

Volumn 34, Issue 4, 2003, Pages 734-744

  Grabarek, J B ^b   Wianny, F ^a   Plusa, B ^a   Zernicka Goetz, M ^a   Glover, David M ^a,b  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b CYCLACEL LTD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CELLS; RNA;

GENE EXPRESSION;

GENES;

DOUBLE STRANDED RNA; NUCLEOTIDE;

ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; CONTROLLED STUDY; EMBRYONIC STEM CELL; GENE EXPRESSION; GENE EXPRESSION REGULATION; MOUSE; NONHUMAN; OOCYTE; RNA STRUCTURE; SOMATIC CELL; STEM CELL;

ANIMALIA; MAMMALIA;

EID: 0037388465     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/03344st02     Document Type: Article

References (37)

1. Fire, A., S. Xu, M.K. Montgomery, S.A. Kostas, S.E. Driver, and C.C. Mello. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806-811.
2. Kennerdell, J.R. and R.W. Carthew. 1998. Use of dsRNA-mediated genetic interference to demonstrate that frizzled and frizzled 2 act in the wingless pathway. Cell 95:1017-1026.
3. Ngo, H., C. Tschudi, K. Gull, and E. Ullu. 1998. Double-stranded RNA induces mRNA degradation in Trypanosoma brucei. Proc. Natl. Acad. Sci. USA 95:14687-14692.
4. Sanchez Alvarado, A. and P.A. Newmark. 1999. Double-stranded RNA specifically disrupts gene expression during planarian regeneration. Proc. Natl. Acad. Sci. USA 96:5049-5054.
5. Galvani, A. and L. Sperling. 2002. RNA interference by feeding in Paramecium. Trends Genet. 18:11-12.
6. Lohmann, J.U., I. Endl, and T.C. Bosch. 1999. Silencing of developmental genes in Hydra. Dev. Biol. 214:211-214.
7. Wargelius, A., S. Ellingsen, and A. Fjose. 1999. Double-stranded RNA induces specific developmental defects in zebrafish embryos. Biochem. Biophys. Res. Commun. 263:156-161.
8. Li, Y.X., M.J. Farrell, R. Liu, N. Mohanty, and M.L. Kirby. 2000. Double-stranded RNA injection produces null phenotypes in zebrafish. Dev. Biol. 217:394-405.
9. Wianny, F. and M. Zernicka-Goetz. 2000. Specific interference with gene function by double-stranded RNA in early mouse development. Nat. Cell Biol. 2:70-75.
10. Svoboda, P., P. Stein, H. Hayashi, and R.M. Schultz. 2000. Selective reduction of dormant maternal mRNAs in mouse oocytes by RNA interference. Development 127:4147-4156.
11. Ui-Tei, K., S. Zenno, Y. Miyata, and K. Saigo. 2000. Sensitive assay of RNA interference in Drosophila and Chinese hamster cultured cells using firefly luciferase gene as target. FEBS Lett. 479:79-82.
12. Kaufman, R.J. 1999. Double-stranded RNA-activated protein kinase mediates virus-induced apoptosis: a new role for an old actor. Proc. Natl. Acad. Sci. USA 96:11693-11695.
13. Paddison, P.J., A.A. Caudy, and G.J. Hannon. 2002. Stable suppression of gene expression by RNAi in mammalian cells. Proc. Natl. Acad. Sci. USA 99:1443-1448.
14. Yi, C.E., J.M. Bekker, G. Miller, K.L. Hill, and R.H. Crosbie. 2003. Specific and potent RNA interference in terminally differentiated myotubes J. Biol. Chem. 278:934-939.
15. Park, W.S., N. Miyano-Kurosaki, M. Hayafune, E. Nakajima, T. Matsuzaki, F. Shimada, and H. Takaku. 2002. Prevention of HIV-1 infection in human peripheral blood mononuclear cells by specific RNA interference Nucleic Acids Res. 30:4830-4835.
16. Grabarek, J.B., B. Plusa, D.M. Glover, and M. Zernicka-Goetz. 2002. Efficient delivery of dsRNA into zona-enclosed mouse oocytes and preimplantation embryos by electroporation. Genesis 32:269-276.
17. Billy, E., V. Brondani, H. Zhang, U. Muller, and W. Filipowicz. 2001. Specific interference with gene expression induced by long, double-stranded RNA in mouse embryonal teratocarcinoma cell lines. Proc. Natl. Acad. Sci. USA 98:14428-14433.
18. Yang, S., S. Tutton, E. Pierce, and K. Yoon. 2001. Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells. Mol. Cell Biol. 21:7807-7816
19. Timmons, L., D.L. Court, and A. Fire. 2001. Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans. Gene 263:103-112.
20. Kennerdell, J.R. and R.W. Carthew. 2000. Heritable gene silencing in Drosophila using double-stranded RNA. Nat. Biotechnol. 18:896-898.
21. Tavernarakis, N., S.L. Wang, M. Dorovkov, A. Ryazanov, and M. Driscoll. 2000. Inheritable and inducible genetic interference by double-stranded RNA encoded by transgenes. Nat. Genet. 4:180-183.
22. Lam, G. and C.S. Thummel. 2000. Inducible expression of double-stranded RNA directs specific genetic interference in Drosophila. Curr. Biol. 10:957-963.
23. Elbashir, S.M., W. Lendeckel, and T. Tuschl. 2001. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev. 15:188-200.
24. Elbashir, S.M., J. Martinez, A. Patkaniowska, W. Lendeckel, and T. Tuschl. 2001. Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J. 20:6877-6888.
25. Elbashir, S.M., J. Harborth, W. Lendeckel, A. Yalcin, K. Weber, and T. Tuschl. 2001. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411:494-498.
26. Brummelkamp, T.R., R. Bernards, and R. Agami. 2002. A system for stable expression of short interfering RNAs in mammalian cells. Science 296:550-553.
27. Paul, C.P., P.D. Good, I. Winer, and R. Engeke. 2002. Effective expression of small interfering RNA in human cells. Nat. Biotechnol. 20:505-508.
28. Yu, J.Y., S.L. DeRuiter, and D.L. Turner. 2002. RNA interference by expression of short interfering RNAs and hairpin RNAs in mammalian cells. Proc. Natl. Acad. Sci. USA 99:6047-6052.
29. Harborth, J., S.M. Elbashir, K. Bechert, T. Tuschl, and K. Weber. 2001. Identification of essential genes in cultured mammalian cells using small interfering RNAs. J. Cell Sci. 114:4557-4565.
30. Nykanen, A., B. Haley, and P.D. Zamore. 2001. ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell 107:309-321.
31. Paddison, P.J., A.A. Caudy, E. Bernstein, G.J. Hannon, and D.S. Conklin. 2002. Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes Dev. 16:948-958.
32. Miyagishi, M. and K. Taira. 2002. U6 promoter-driven siRNAs with four uridine 3′ overhangs efficiently suppress targeted gene expression in mammalian cells. Nat. Biotechnol. 20:497-500.
33. Grishok, A., A.E. Pasquinelli, D. Conte, N. Li, S. Parrish, I. Ha, D.L. Baillie, A. Fire, et al. 2001. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 106:23-34.
34. Ketting, R.F., S.E. Fischer, E. Bernstein, T. Sijen, G.J. Hannon, and R.H. Plasterk. 2001. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev. 15:2654-2659.
35. Lagos-Quintana, M., R. Rauhut, W. Lendeckel, and T. Tuschl. 2001. Identification of novel genes coding for small expressed RNAs. Science 294:853-858.
36. Lau, N.C., L.P. Lim, E.G. Weinstein, and D.P. Bartel. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294:858-862.
37. Zeng, Y., E.J. Wagner, and B.R. Cullen. 2002. Both natural and designed micro RNAs technique can inhibit the expression of cognate mRNAs when expressed in human cells Mol. Cell 9:1327-1333.