Meeting halfway on the bridge between protein folding theory and experiment

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 7, 2003, Pages 3555-3556

  Pande, Vijay S ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HOMEODOMAIN PROTEIN; PROTEIN ENGHD; UNCLASSIFIED DRUG; PROTEIN;

ALGORITHM; BETA SHEET; BIEXPONENTIAL KINETICS; CHEMICAL REACTION KINETICS; EXPERIMENTAL MEDICINE; MATHEMATICAL ANALYSIS; MOLECULAR PHYSICS; NONHUMAN; NOTE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; QUALITATIVE ANALYSIS; QUANTITATIVE DIAGNOSIS; SIMULATION; SINGLE EXPONENTIAL KINETICS; STEREOCHEMISTRY; STRUCTURE ANALYSIS; TEMPERATURE DEPENDENCE; THEORY; CHEMISTRY; KINETICS; METABOLISM; PROTEIN SECONDARY STRUCTURE; THEORETICAL MODEL; THERMODYNAMICS;

KINETICS; MODELS, THEORETICAL; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEINS; THERMODYNAMICS;

EID: 0037388193     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0830965100     Document Type: Note

References (36)

1. Dobson, C. M., Sali, A. & Karplus, M. (1998) Angew. Chem. Int. Ed. Engl. 37, 868-893.
2. Levitt, M. (2001) Nat. Struct. Biol. 8, 392-393.
3. Karanicolas, J. & Brooks, C. L., III (2003) Proc. Natl. Acad. Sci. USA 100, 3954-3959.
4. Nguyen, H., Jäger, M., Moretto, A., Gruebele, M. & Kelley, J. W. (2003) Proc. Natl. Acad. Sci. USA 100, 3948-3953.
5. Jackson, S. & Fersht, A. (1991) Biochemistry 30, 10428-10435.
6. Mayor, U., Johnson, C. M., Daggett, V. & Fersht, A. R. (2000) Proc. Natl. Acad. Sci. USA 97, 13518-13522.
7. Munoz, V., Thompson, P. A., Hofrichter, J. & Eaton, W. A. (1997) Nature 390, 196-199.
8. Clementi, C., Jennings, P. A. & Onuchic, J. N. (2000) Proc. Natl. Acad. Sci. USA 97, 5871-5876.
9. Snow, C., Nguyen, H., Pande, V. S. & Gruebele, M. (2002) Nature 420, 102-106.
10. Shakhnovich, E. & Fersht, A. (1998) Curr. Opin. Struct. Biol. 8, 65-67.
11. Daggett, V. & Fersht, A. R. (2003) Trends Biochem. Sci. 28, 18-25.
12. Huang, G. & Oas, T. (1995) Proc. Natl. Acad. Sci. USA 92, 6878-6882.
13. Neideigh, J. W., Fesinmeyer, R. M. & Andersen, N. H. (2002) Nat. Struct. Biol. 9, 425-430.
14. Struthers, M., Ottesen, J. J. & Imperiali, B. (1998) Folding Des. 3, 95-103.
15. Hagen, S. J., Hofrichter, J., Szabo, A. & Eaton, W. A. (1996) Proc. Natl. Acad. Sci. USA 93, 11615-11617.
16. McCammon, J. A. (1996) Proc. Natl. Acad. Sci. USA 93, 11426-11427.
17. Shirts, M. R. & Pande, V. S. (2000) Science 290, 1903-1904.
18. Fersht, A. R. (2002) Proc. Natl. Acad. Sci. USA 99, 14122-14125.
19. Snow, C., Zagrovic, B. & Pande, V. S. (2002) J. Am. Chem. Soc. 124, 14548-14549.
20. Zagrovic, B., Snow, C., Shirts, M. & Pande, V. S. (2002) J. Mol. Biol. 323, 927-937.
21. Zagrovic, B., Sorin, E. J. & Pande, V. (2001) J. Mol. Biol. 313, 151-169.
22. Pande, V. S., Baker, I., Chapman, J., Elmer, S., Kaliq, S., Larson, S., Rhee, Y. M., Shirts, M. R., Snow, C., Sorin, E. J. & Zagrovic, B. (2003) Biopolymers 68, 91-109.
23. Klimov, D., Newfield, D. & Thirumalai, D. (2002) Proc. Natl. Acad. Sci. USA 99, 8019-8024.
24. Shea, J.-E., Onuchic, J. N. & Brooks, C. L., III. (2002) Proc. Natl. Acad. Sci. USA 99, 16064-16068.
25. Shimada, J. & Shakhnovich, E. I. (2002) Proc. Natl. Acad. Sci. USA 99, 11175-11180.
26. Klimov, D. K. & Thirumalai, D. (2000) Proc. Natl. Acad. Sci. USA 97, 2544-2549.
27. Yue, K., Fiebig, K., Thomas, P., Chan, H., Shakhnovich, E. & Dill, K. (1995) Proc. Natl. Acad. Sci. USA 92, 325-329.
28. Pande, V. S. & Rokhsar, D. S. (1998) Proc. Natl. Acad. Sci. USA 95, 1490-1494.
29. Plaxco, K. W., Simons, K. T. & Baker, D. (1998) J. Mol. Biol. 277, 985-994.
30. Baldwin, R. L. & Rose, G. D. (1999) Trends Biochem. Sci. 24, 26-33.
31. Srinivasan, R. & Rose, G. D. (1995) Proteins Struct. Funct. Genet. 22, 81-99.
32. Srinivasan, R. & Rose, G. D. (2002) Proteins Struct. Funct. Genet. 47, 489-495.
33. Shortle, D. (2000) Curr. Biol. 10, R49-R51.
34. Zagrovic, B., Snow, C., Khaliq, S., Shirts, M. & Pande, V. S. (2002) J. Mol. Biol. 323, 153-164.
35. Shortle, D. (2002) Adv. Protein Chem. 62, 1-23.
36. Shortle, D. & Ackerman, M. S. (2001) Science 293, 487-489.