메뉴 건너뛰기




Volumn 26, Issue 1, 2003, Pages 3-12

Analysis of conserved non-rRNA genes of Tropheryma whipplei

Author keywords

Genome walking; Phylogeny; Strain typing; Tropheryma; Whipple's disease

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CHAPERONIN; DNA DIRECTED RNA POLYMERASE; ELONGATION FACTOR TU; HEAT SHOCK PROTEIN; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; RIBONUCLEASE P; RIBOSOME DNA; SPACER DNA;

EID: 0037366975     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/072320203322337254     Document Type: Article
Times cited : (13)

References (49)
  • 1
    • 0032512801 scopus 로고    scopus 로고
    • A symmetric-iterated multiple alignment of protein sequences
    • Brocchieri, L., Karlin, S.: A symmetric-iterated multiple alignment of protein sequences. J. Mol. Biol. 276, 249-264 (1998).
    • (1998) J. Mol. Biol. , vol.276 , pp. 249-264
    • Brocchieri, L.1    Karlin, S.2
  • 2
    • 0034064511 scopus 로고    scopus 로고
    • Conservation among HSP60 sequences in relation to structure, function, and evolution
    • Brocchieri, L., Karlin, S.: Conservation among HSP60 sequences in relation to structure, function, and evolution. Protein Sci. 9, 476-486 (2000).
    • (2000) Protein Sci. , vol.9 , pp. 476-486
    • Brocchieri, L.1    Karlin, S.2
  • 3
    • 0344298926 scopus 로고    scopus 로고
    • The Ribonuclease P Database
    • Brown, J. W.: The Ribonuclease P Database. Nucleic Acids Res. 27, 314 (1999).
    • (1999) Nucleic Acids Res. , vol.27 , pp. 314
    • Brown, J.W.1
  • 6
    • 0034961601 scopus 로고    scopus 로고
    • rpoB sequence analysis of cultured Tropheryma whippelii
    • Drancourt, M., Carlioz, A., Raoult, D.: rpoB sequence analysis of cultured Tropheryma whippelii. J. Clin. Microbiol. 39, 2425-2430 (2001).
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 2425-2430
    • Drancourt, M.1    Carlioz, A.2    Raoult, D.3
  • 8
    • 0034750519 scopus 로고    scopus 로고
    • Detection of a new 16S-23S rRNA spacer sequence variant (type 7) of Tropheryma whippelii in a patient with prosthetic aortic valve endocarditis
    • Geissdörfer, W., Wittmann, I., Rollinghoff, M., Schoerner, C., Bogdan, C.: Detection of a new 16S-23S rRNA spacer sequence variant (type 7) of Tropheryma whippelii in a patient with prosthetic aortic valve endocarditis. Eur. J. Clin. Microbiol. Infect. Dis. 20, 762-763 (2001).
    • (2001) Eur. J. Clin. Microbiol. Infect. Dis. , vol.20 , pp. 762-763
    • Geissdörfer, W.1    Wittmann, I.2    Rollinghoff, M.3    Schoerner, C.4    Bogdan, C.5
  • 9
    • 0029803926 scopus 로고    scopus 로고
    • Structure and evolution of ribonuclease P RNA in Gram-positive bacteria
    • Haas, E. S., Banta, A. B., Harris, J. K., Pace, N. R., Brown, J. W.: Structure and evolution of ribonuclease P RNA in Gram-positive bacteria. Nucleic Acids Res. 24, 4775-4782 (1996).
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4775-4782
    • Haas, E.S.1    Banta, A.B.2    Harris, J.K.3    Pace, N.R.4    Brown, J.W.5
  • 10
    • 0030034307 scopus 로고    scopus 로고
    • Heat-shock and general stress response in Bacillus subtilis
    • Hecker, M., Schumann, W., Völker, U.: Heat-shock and general stress response in Bacillus subtilis. Mol. Microbiol. 19, 417-428 (1996).
    • (1996) Mol. Microbiol. , vol.19 , pp. 417-428
    • Hecker, M.1    Schumann, W.2    Völker, U.3
  • 11
    • 0032881595 scopus 로고    scopus 로고
    • Molecular switches - The ON and OFF of bacterial phase variation
    • Henderson, I. R., Owen, P., Nataro, J. P.: Molecular switches - the ON and OFF of bacterial phase variation. Mol. Microbiol. 33, 919-932 (1999).
    • (1999) Mol. Microbiol. , vol.33 , pp. 919-932
    • Henderson, I.R.1    Owen, P.2    Nataro, J.P.3
  • 12
    • 0028118434 scopus 로고
    • Protein family classification based on searching a database of blocks
    • Henikoff, S., Henikoff, J. G.: Protein family classification based on searching a database of blocks. Genomics 19, 97-107 (1994).
    • (1994) Genomics , vol.19 , pp. 97-107
    • Henikoff, S.1    Henikoff, J.G.2
  • 13
    • 0028982625 scopus 로고
    • The ATP synthase (F1F0) of Streptomyces lividans: Sequencing of the atp operon and phylogenetic considerations with subunit beta
    • Hensel, M., Lill, H., Schmid, R., Deckers-Hebestreit, G., Altendorf, K.: The ATP synthase (F1F0) of Streptomyces lividans: sequencing of the atp operon and phylogenetic considerations with subunit beta. Gene 152, 11-17 (1995).
    • (1995) Gene , vol.152 , pp. 11-17
    • Hensel, M.1    Lill, H.2    Schmid, R.3    Deckers-Hebestreit, G.4    Altendorf, K.5
  • 14
    • 0029980154 scopus 로고    scopus 로고
    • Differentiation of Chlamydia spp. by sequence determination and restriction endonuclease cleavage of RNase P RNA genes
    • Herrmann, B., Winqvist, O., Mattsson, J. G., Kirsebom, L. A.: Differentiation of Chlamydia spp. by sequence determination and restriction endonuclease cleavage of RNase P RNA genes. J. Clin. Microbiol. 34, 1897-1902 (1996).
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 1897-1902
    • Herrmann, B.1    Winqvist, O.2    Mattsson, J.G.3    Kirsebom, L.A.4
  • 15
    • 0032754139 scopus 로고    scopus 로고
    • Detection of three different types of 'Tropheryma whippelii' directly from clinical specimens by sequencing, single-strand conformation polymorphism (SSCP) analysis and type-specific PCR of their 16S-23S ribosomal intergenic spacer region
    • Hinrikson, H. P., Dutly, F., Nair, S., Altwegg, M.: Detection of three different types of 'Tropheryma whippelii' directly from clinical specimens by sequencing, single-strand conformation polymorphism (SSCP) analysis and type-specific PCR of their 16S-23S ribosomal intergenic spacer region. Int. J. Syst. Bacteriol. 49, 1701-1706 (1999).
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 1701-1706
    • Hinrikson, H.P.1    Dutly, F.2    Nair, S.3    Altwegg, M.4
  • 16
    • 0032855584 scopus 로고    scopus 로고
    • Evidence that a single EF-Ts suffices for the recycling of multiple and divergent EF-Tu species in Streptomyces coelicolor A3(2) and Streptomyces ramocissimus
    • Hoogvliet, G., van Wezel, G. P., Kraal, B.: Evidence that a single EF-Ts suffices for the recycling of multiple and divergent EF-Tu species in Streptomyces coelicolor A3(2) and Streptomyces ramocissimus. Microbiology 145, 2293-2301 (1999).
    • (1999) Microbiology , vol.145 , Issue.2 , pp. 2293-2301
    • Hoogvliet, G.1    Van Wezel, G.P.2    Kraal, B.3
  • 17
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B. M., Pace, N. R.: Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180, 4765-4774 (1998).
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 18
    • 0027386078 scopus 로고
    • Contrasting evolutionary rates in the duplicate chaperonin genes of Mycobacterium tuberculosis and M. leprae
    • Hughes, A. L.: Contrasting evolutionary rates in the duplicate chaperonin genes of Mycobacterium tuberculosis and M. leprae. Mol. Biol. Evol. 10, 1343-1359 (1993).
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1343-1359
    • Hughes, A.L.1
  • 19
    • 0034888743 scopus 로고    scopus 로고
    • Characterizations of highly expressed genes of four fast-growing bacteria
    • Karlin, S., Mrazek, J., Campbell, A., Kaiser, D.: Characterizations of highly expressed genes of four fast-growing bacteria. J. Bacteriol. 183, 5025-5040 (2001).
    • (2001) J. Bacteriol. , vol.183 , pp. 5025-5040
    • Karlin, S.1    Mrazek, J.2    Campbell, A.3    Kaiser, D.4
  • 21
    • 0027995648 scopus 로고
    • DNA-dependent RNA polymerase subunit B as a tool for phylogenetic reconstructions: Branching topology of the archaeal domain
    • Klenk, H. P., Zillig, W.: DNA-dependent RNA polymerase subunit B as a tool for phylogenetic reconstructions: branching topology of the archaeal domain. J. Mol. Evol. 38,420-432 (1994).
    • (1994) J. Mol. Evol. , vol.38 , pp. 420-432
    • Klenk, H.P.1    Zillig, W.2
  • 24
    • 0027998116 scopus 로고
    • Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
    • Ludwig, W., Schleifer, K. H.: Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol. Rev. 15, 155-173 (1994).
    • (1994) FEMS Microbiol. Rev. , vol.15 , pp. 155-173
    • Ludwig, W.1    Schleifer, K.H.2
  • 26
    • 0029817508 scopus 로고    scopus 로고
    • Reassessment of the phylogenetic position of the bacterium associated with Whipple's disease and determination of the 16S-23S ribosomal intergenic spacer sequence
    • Maiwald, M., Ditton, H. J., von Herbay, A., Rainey, F. A., Stackebrandt, E.: Reassessment of the phylogenetic position of the bacterium associated with Whipple's disease and determination of the 16S-23S ribosomal intergenic spacer sequence. Int. J. Syst. Bacteriol. 46, 1078-1082 (1996).
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 1078-1082
    • Maiwald, M.1    Ditton, H.J.2    Von Herbay, A.3    Rainey, F.A.4    Stackebrandt, E.5
  • 27
    • 0031913564 scopus 로고    scopus 로고
    • Environmental occurrence of the Whipple's disease bacterium (Tropheryma whippelii)
    • Maiwald, M., Schuhmacher, F., Ditton, H. J., von Herbay, A.: Environmental occurrence of the Whipple's disease bacterium (Tropheryma whippelii). Appl. Environ. Microbiol. 64, 760-762 (1998).
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 760-762
    • Maiwald, M.1    Schuhmacher, F.2    Ditton, H.J.3    Von Herbay, A.4
  • 28
    • 0034035285 scopus 로고    scopus 로고
    • Organization, structure, and variability of the rRNA operon of the Whipple's disease bacterium (Tropheryma whippelii)
    • Maiwald, M., von Herbay, A., Lepp, P. W., Relman, D. A.: Organization, structure, and variability of the rRNA operon of the Whipple's disease bacterium (Tropheryma whippelii). J. Bacteriol. 182, 3292-3297 (2000).
    • (2000) J. Bacteriol. , vol.182 , pp. 3292-3297
    • Maiwald, M.1    Von Herbay, A.2    Lepp, P.W.3    Relman, D.A.4
  • 29
    • 0034098411 scopus 로고    scopus 로고
    • Cloning and sequencing of a part of the heat shock protein 65 gene (hsp65) of "Tropheryma whippelii" and its use for detection of "T. whippelii" in clinical specimens by PCR
    • Morgenegg, S., Dutly, F., Altwegg, M.: Cloning and sequencing of a part of the heat shock protein 65 gene (hsp65) of "Tropheryma whippelii" and its use for detection of "T. whippelii" in clinical specimens by PCR. J. Clin. Microbiol. 38, 2248-2253 (2000).
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 2248-2253
    • Morgenegg, S.1    Dutly, F.2    Altwegg, M.3
  • 31
    • 0030035418 scopus 로고    scopus 로고
    • A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome
    • Redenbach, M., Kieser, H. M., Denapaite, D., Eichner, A., Cullum, J., Kinashi, H., Hopwood, D. A.: A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol. Microbiol. 21, 77-96 (1996).
    • (1996) Mol. Microbiol. , vol.21 , Issue.2 , pp. 77-96
    • Redenbach, M.1    Kieser, H.M.2    Denapaite, D.3    Eichner, A.4    Cullum, J.5    Kinashi, H.6    Hopwood, D.A.7
  • 32
    • 0026632826 scopus 로고
    • Identification of the uncultured bacillus of Whipple's Disease
    • Relman, D. A., Schmidt, T. M., Macdermott, R. P., Falkow, S.: Identification of the uncultured bacillus of Whipple's Disease. N. Engl. J. Med. 327, 293-301 (1992).
    • (1992) N. Engl. J. Med. , vol.327 , pp. 293-301
    • Relman, D.A.1    Schmidt, T.M.2    Macdermott, R.P.3    Falkow, S.4
  • 33
    • 0034530513 scopus 로고    scopus 로고
    • Determination of the rpoB gene sequences of Bartonella henselae and Bartonella quintana for phylogenic analysis
    • Renesto, P., Gautheret, D., Drancourt, M., Raoult, D.: Determination of the rpoB gene sequences of Bartonella henselae and Bartonella quintana for phylogenic analysis. Res. Microbiol. 151, 831-836 (2000).
    • (2000) Res. Microbiol. , vol.151 , pp. 831-836
    • Renesto, P.1    Gautheret, D.2    Drancourt, M.3    Raoult, D.4
  • 35
    • 0025048136 scopus 로고
    • The P-loop - A common motif in ATP- and GTP-binding proteins
    • Saraste, M., Sibbald, P. R., Wittinghofer, A.: The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biochem. Sci. 15, 430-434 (1990).
    • (1990) Trends Biochem. Sci. , vol.15 , pp. 430-434
    • Saraste, M.1    Sibbald, P.R.2    Wittinghofer, A.3
  • 36
    • 0027494113 scopus 로고
    • Restriction-site PCR: A direct method of unknown sequence retrieval adjacent to a known locus by using universal primers
    • Sarkar, G., Turner, R. T., Bolander, M. E.: Restriction-site PCR: a direct method of unknown sequence retrieval adjacent to a known locus by using universal primers. PCR Methods Appl. 2, 318-322 (1993).
    • (1993) PCR Methods Appl. , vol.2 , pp. 318-322
    • Sarkar, G.1    Turner, R.T.2    Bolander, M.E.3
  • 37
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., DeLong, E. F., Pace, N. R.: Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173, 4371-4378 (1991).
    • (1991) J. Bacteriol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 38
    • 0024570876 scopus 로고
    • Duplication of the tuf gene: A new insight into the phylogeny of eubacteria
    • Sela, S., Yogev, D., Razin, S., Bercovier, H.: Duplication of the tuf gene: a new insight into the phylogeny of eubacteria. J. Bacteriol. 171, 581-584 (1989).
    • (1989) J. Bacteriol. , vol.171 , pp. 581-584
    • Sela, S.1    Yogev, D.2    Razin, S.3    Bercovier, H.4
  • 41
    • 0033152406 scopus 로고    scopus 로고
    • The role of short sequence repeats in epidemiologic typing
    • van Belkum, A.: The role of short sequence repeats in epidemiologic typing. Curr. Opin. Microbiol. 2, 306-311 (1999).
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 306-311
    • Van Belkum, A.1
  • 43
    • 0028343191 scopus 로고
    • Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons
    • Viale, A. M., Arakaki, A. K., Soncini, F. C., Ferreyra, R. G.: Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons. Int. J. Syst. Bacteriol. 44, 527-533 (1994).
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 527-533
    • Viale, A.M.1    Arakaki, A.K.2    Soncini, F.C.3    Ferreyra, R.G.4
  • 45
    • 0030012431 scopus 로고    scopus 로고
    • Diagnostic application of a polymerase chain reaction assay for the Whipple's disease bacterium to intestinal biopsies
    • von Herbay, A., Ditton, H. J., Maiwald, M.: Diagnostic application of a polymerase chain reaction assay for the Whipple's disease bacterium to intestinal biopsies. Gastroenterology 110, 1735-1743 (1996).
    • (1996) Gastroenterology , vol.110 , pp. 1735-1743
    • Von Herbay, A.1    Ditton, H.J.2    Maiwald, M.3
  • 46
    • 0030855174 scopus 로고    scopus 로고
    • Whipple's disease: Staging and monitoring by cytology and polymerase chain reaction analysis of cerebrospinal fluid
    • von Herbay, A., Ditton, H. J., Schuhmacher, F., Maiwald, M.: Whipple's disease: Staging and monitoring by cytology and polymerase chain reaction analysis of cerebrospinal fluid. Gastroenterology 113, 434-441 (1997).
    • (1997) Gastroenterology , vol.113 , pp. 434-441
    • Von Herbay, A.1    Ditton, H.J.2    Schuhmacher, F.3    Maiwald, M.4
  • 47
    • 0001607723 scopus 로고
    • Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
    • Walker, J. E., Saraste, M., Runswick, M. J., Gay, N. J.: Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1, 945-951 (1982).
    • (1982) EMBO J. , vol.1 , pp. 945-951
    • Walker, J.E.1    Saraste, M.2    Runswick, M.J.3    Gay, N.J.4
  • 48
  • 49
    • 0034521789 scopus 로고    scopus 로고
    • Comparative sequence analyses of the ribonuclease P (RNase P) RNA genes from LL-2,6-diaminopimelic acid-containing actinomycetes
    • Yoon, J. H., Park, Y. H.: Comparative sequence analyses of the ribonuclease P (RNase P) RNA genes from LL-2,6-diaminopimelic acid-containing actinomycetes. Int. J. Syst. Evol. Microbiol. 50, 2021-2029 (2000).
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 2021-2029
    • Yoon, J.H.1    Park, Y.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.