메뉴 건너뛰기




Volumn 13, Issue 3, 2003, Pages 443-454

Gene discovery in the Apicomplexa as revealed by EST sequencing and assembly of a comparative gene database

Author keywords

[No Author keywords available]

Indexed keywords

APICOMPLEXA; ARTICLE; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; EIMERIA TENELLA; EXPRESSED SEQUENCE TAG; GENE CLUSTER; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC POLYMORPHISM; NEOSPORA CANINUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; PROTEIN DATABASE; SARCOCYSTIS NEURONA; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; TOXOPLASMA GONDII; UNINDEXED SEQUENCE;

EID: 0037348716     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.693203     Document Type: Article
Times cited : (132)

References (54)
  • 3
    • 0029051349 scopus 로고
    • Biochemical and molecular characterization of nucleoside triphosphate hydrolase isozymes from the parasitic protozoan Toxoplasma gondii
    • Asai, T., Miura, S., Sibley, L.D., Okabayashi, H., and Takeuchi, T. 1995. Biochemical and molecular characterization of nucleoside triphosphate hydrolase isozymes from the parasitic protozoan Toxoplasma gondii. J. Biol. Chem. 270: 11391-11397.
    • (1995) J. Biol. Chem. , vol.270 , pp. 11391-11397
    • Asai, T.1    Miura, S.2    Sibley, L.D.3    Okabayashi, H.4    Takeuchi, T.5
  • 4
    • 0032212406 scopus 로고    scopus 로고
    • Neospora caninum: Tachyzoites express a potent Type-I nucleoside triphosphate hydrolase, but lack nucleoside diphosphate hydrolase activity
    • Asai, T., Howe, D.K., Nakajima, K., Nozaki, T., Takeuchi, T., and Sibley, L.D. 1998. Neospora caninum: Tachyzoites express a potent Type-I nucleoside triphosphate hydrolase, but lack nucleoside diphosphate hydrolase activity. Exp. Parasitol. 90: 277-285.
    • (1998) Exp. Parasitol. , vol.90 , pp. 277-285
    • Asai, T.1    Howe, D.K.2    Nakajima, K.3    Nozaki, T.4    Takeuchi, T.5    Sibley, L.D.6
  • 5
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S.L., Roger, A.J., Wenk-Siefert, I., and Doolittle, W.F. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 9
    • 0030956863 scopus 로고    scopus 로고
    • Sequential protein secretion from three distinct organelles of Toxoplasma gondii accompanies invasion of human fibroblasts
    • Carruthers, V.B. and Sibley, L.D. 1997. Sequential protein secretion from three distinct organelles of Toxoplasma gondii accompanies invasion of human fibroblasts. Eur. J. Cell Biol. 73: 114-123.
    • (1997) Eur. J. Cell Biol. , vol.73 , pp. 114-123
    • Carruthers, V.B.1    Sibley, L.D.2
  • 11
    • 0034834713 scopus 로고    scopus 로고
    • An oligonucleotide fingerprint normalized and expressed sequence tag characterized zebrafish cDNA library
    • Clark, M.D., Hennig, S., Herwig, R., Clifton, S.W., Marra, M.A., Lehrach, H., and Johnson, S.L. 2001. An oligonucleotide fingerprint normalized and expressed sequence tag characterized zebrafish cDNA library. Genome Res. 11: 1594-1602.
    • (2001) Genome Res. , vol.11 , pp. 1594-1602
    • Clark, M.D.1    Hennig, S.2    Herwig, R.3    Clifton, S.W.4    Marra, M.A.5    Lehrach, H.6    Johnson, S.L.7
  • 12
    • 0033781073 scopus 로고    scopus 로고
    • Using DNA microarrays to study host-microbe interactions
    • Cummings, C.A. and Relman, D.A. 2000. Using DNA microarrays to study host-microbe interactions. Emerg. Infect. Dis. 6: 513-525.
    • (2000) Emerg. Infect. Dis. , vol.6 , pp. 513-525
    • Cummings, C.A.1    Relman, D.A.2
  • 14
    • 0033763903 scopus 로고    scopus 로고
    • The Toxoplasma homolog of Plasmodium apical membrane antigen-1 (AMA-1) is a microneme protein secreted in response to elevated calcium levels
    • Donahue, C.G., Carruthers, V.B., Gilk, S.D., and Ward, G.E. 2000. The Toxoplasma homolog of Plasmodium apical membrane antigen-1 (AMA-1) is a microneme protein secreted in response to elevated calcium levels. Mol. Biochem. Parasitol. 111: 15-30.
    • (2000) Mol. Biochem. Parasitol. , vol.111 , pp. 15-30
    • Donahue, C.G.1    Carruthers, V.B.2    Gilk, S.D.3    Ward, G.E.4
  • 15
    • 0000851766 scopus 로고
    • Toxoplasma, Hammondia, Besniotia, Sarcocystis, and other tissue cyst-forming coccidia of man and animals
    • (ed. J.P. Kreier), Academic press, New York, NY
    • Dubey, J.P. 1977. Toxoplasma, Hammondia, Besniotia, Sarcocystis, and other tissue cyst-forming coccidia of man and animals. In Parasitic protozoa (ed. J.P. Kreier), pp. 101-237. Academic press, New York, NY.
    • (1977) Parasitic Protozoa , pp. 101-237
    • Dubey, J.P.1
  • 16
    • 0030566651 scopus 로고    scopus 로고
    • A review of Neospora caninum and neosporosis
    • Dubey, J.P. and Lindsay, D.S. 1996. A review of Neospora caninum and neosporosis. Vet. Parasitol. 67: 1-59.
    • (1996) Vet. Parasitol. , vol.67 , pp. 1-59
    • Dubey, J.P.1    Lindsay, D.S.2
  • 17
    • 0027199059 scopus 로고
    • Kinetics and pattern of organelle exocytosis during Toxoplasma gondii host-cell interaction
    • Dubremetz, J.F., Achbarou, A., Bermudes, D., and Joiner, K.A. 1993. Kinetics and pattern of organelle exocytosis during Toxoplasma gondii host-cell interaction. Parasitol. Res. 79: 402-408.
    • (1993) Parasitol. Res. , vol.79 , pp. 402-408
    • Dubremetz, J.F.1    Achbarou, A.2    Bermudes, D.3    Joiner, K.A.4
  • 18
    • 0035933350 scopus 로고    scopus 로고
    • Differential expression of two plant-like enolases with distinct enzymatic and antigenic properties during stage conversion of the protozoan parasite Toxoplasma gondii
    • Dzierszinski, F., Mortuaire, M., Dendouga, N., Popescu, O., and Tomavo, S. 2001. Differential expression of two plant-like enolases with distinct enzymatic and antigenic properties during stage conversion of the protozoan parasite Toxoplasma gondii. J. Mol. Biol. 309: 1017-1027.
    • (2001) J. Mol. Biol. , vol.309 , pp. 1017-1027
    • Dzierszinski, F.1    Mortuaire, M.2    Dendouga, N.3    Popescu, O.4    Tomavo, S.5
  • 19
    • 0033031437 scopus 로고    scopus 로고
    • DNA arrays for analysis of gene expression
    • Eisen, M.B. and Brown, P.O. 1999. DNA arrays for analysis of gene expression. Methods Enzymol. 303: 179-205.
    • (1999) Methods Enzymol. , vol.303 , pp. 179-205
    • Eisen, M.B.1    Brown, P.O.2
  • 20
    • 0028113391 scopus 로고
    • Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences
    • Escalante, A.A. and Ayala, F.J. 1994. Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences. Proc. Natl. Acad. Sci. 91: 11373-11377.
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 11373-11377
    • Escalante, A.A.1    Ayala, F.J.2
  • 21
    • 0032742129 scopus 로고    scopus 로고
    • Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
    • Ewing, R.M., Kahla, A.B., Poirot, O., Lopez, F., Audic, S., and Claverie, J.M. 1999. Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res. 9: 950-959.
    • (1999) Genome Res. , vol.9 , pp. 950-959
    • Ewing, R.M.1    Kahla, A.B.2    Poirot, O.3    Lopez, F.4    Audic, S.5    Claverie, J.M.6
  • 22
    • 0026017244 scopus 로고
    • Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among Apicomplexans, dinoflagelates, and ciliates
    • Gajadhar, A.A., Marquardt, W.C., Hall, R., Gunderson, J., Ariztia-Carmona, E.V., and Sogin, M.L. 1991. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among Apicomplexans, dinoflagelates, and ciliates. Mol. Biochem. Parasitol. 45: 147-154.
    • (1991) Mol. Biochem. Parasitol. , vol.45 , pp. 147-154
    • Gajadhar, A.A.1    Marquardt, W.C.2    Hall, R.3    Gunderson, J.4    Ariztia-Carmona, E.V.5    Sogin, M.L.6
  • 25
    • 0034111791 scopus 로고    scopus 로고
    • A dibasic motif in the tail of a class XIV Apicomplexan myosin is an essential determinant of plasma membrane localization
    • Hettman, C., Herm, A., Geiter, A., Frank, B., Schwarz, E., Soldati, T., and Soldati, D. 2000. A dibasic motif in the tail of a class XIV Apicomplexan myosin is an essential determinant of plasma membrane localization. Mol. Biol. Cell 11: 1385-1400.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 1385-1400
    • Hettman, C.1    Herm, A.2    Geiter, A.3    Frank, B.4    Schwarz, E.5    Soldati, T.6    Soldati, D.7
  • 26
    • 0029976603 scopus 로고    scopus 로고
    • Using CLUSTAL for multiple sequence alignments
    • Higgins, D.G., Thompson, J.D., and Gibson, T.J. 1996. Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266: 382-402.
    • (1996) Methods Enzymol. , vol.266 , pp. 382-402
    • Higgins, D.G.1    Thompson, J.D.2    Gibson, T.J.3
  • 28
    • 0035952212 scopus 로고    scopus 로고
    • Initiation of a Sarcocystis neurona expressed sequence tag (EST) sequencing project: A preliminary report
    • Howe, D.K. 2001. Initiation of a Sarcocystis neurona expressed sequence tag (EST) sequencing project: A preliminary report. Vet. Parasitol. 95: 233-239.
    • (2001) Vet. Parasitol. , vol.95 , pp. 233-239
    • Howe, D.K.1
  • 29
    • 0028886480 scopus 로고
    • Toxoplasma gondii comprises three clonal lineages: Correlation of parasite genotype with human disease
    • Howe, D.K. and Sibley, L.D. 1995. Toxoplasma gondii comprises three clonal lineages: Correlation of parasite genotype with human disease. J. Infect. Dis. 172: 1561-1566.
    • (1995) J. Infect. Dis. , vol.172 , pp. 1561-1566
    • Howe, D.K.1    Sibley, L.D.2
  • 33
    • 0033759567 scopus 로고    scopus 로고
    • Toxoplasma gondii: Identification of a developmentally regulated family of genes related to SAG2
    • Lekutis, C., Ferguson, D.J., and Boothroyd, J.C. 2000. Toxoplasma gondii: Identification of a developmentally regulated family of genes related to SAG2. Exp. Parasitol. 96: 89-96.
    • (2000) Exp. Parasitol. , vol.96 , pp. 89-96
    • Lekutis, C.1    Ferguson, D.J.2    Boothroyd, J.C.3
  • 34
    • 0000428662 scopus 로고
    • Taxonomy of the sporozoa
    • Levine, N.D. 1970. Taxonomy of the sporozoa. J. Protozool. 56: 208-209.
    • (1970) J. Protozool. , vol.56 , pp. 208-209
    • Levine, N.D.1
  • 35
    • 0024616286 scopus 로고
    • In vitro development of Neospora caninum (Protozoa: Apicomplexa) from dogs
    • Lindsay, D.S. and Dubey, J.P. 1989. In vitro development of Neospora caninum (Protozoa: Apicomplexa) from dogs. J. Parasitol. 75: 163-165.
    • (1989) J. Parasitol. , vol.75 , pp. 163-165
    • Lindsay, D.S.1    Dubey, J.P.2
  • 36
    • 0001316171 scopus 로고
    • Avian coccidiosis
    • (ed. J.P. Krier), Academic Press, New York, NY
    • Long, P. 1993. Avian coccidiosis. In Parasitic protozoa (ed. J.P. Krier), pp. 1-75. Academic Press, New York, NY.
    • (1993) Parasitic Protozoa , pp. 1-75
    • Long, P.1
  • 37
    • 0031949214 scopus 로고    scopus 로고
    • The surface of Toxoplasma tachyzoites is dominated by a family of glycosylphosphatidylinositol-anchored antigens related to SAG1
    • Manger, I., Hehl, A.B., and Boothroyd, J.C. 1998a. The surface of Toxoplasma tachyzoites is dominated by a family of glycosylphosphatidylinositol-anchored antigens related to SAG1. Infect. Immun. 66: 2237-2244.
    • (1998) Infect. Immun. , vol.66 , pp. 2237-2244
    • Manger, I.1    Hehl, A.B.2    Boothroyd, J.C.3
  • 38
    • 0032036479 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of the bradyzoite stage of Toxoplasma gondii: Identification of developmentally regulated genes
    • Manger, I.D., Adrian, H., Parmley, S., Sibley, L.D., Marra, M., Hillier, L., Waterston, R., and Boothroyd, J.C. 1998b. Expressed sequence tag analysis of the bradyzoite stage of Toxoplasma gondii: Identification of developmentally regulated genes. Infect. Immun. 66: 1632-1637.
    • (1998) Infect. Immun. , vol.66 , pp. 1632-1637
    • Manger, I.D.1    Adrian, H.2    Parmley, S.3    Sibley, L.D.4    Marra, M.5    Hillier, L.6    Waterston, R.7    Boothroyd, J.C.8
  • 43
    • 0027438327 scopus 로고
    • Gene sequence tags from Plasmodium falciparum genomic fragments prepared by the "genase" activity of mung bean nuclease
    • Reddy, G.R., Chakrabarti, D., Schuster, S.M., Ferl, R.J., Almira, E.C., and Dame, J.B. 1993. Gene sequence tags from Plasmodium falciparum genomic fragments prepared by the "genase" activity of mung bean nuclease. Proc. Natl. Acad. Sci. 90: 9867-9871.
    • (1993) Proc. Natl. Acad. Sci. , vol.90 , pp. 9867-9871
    • Reddy, G.R.1    Chakrabarti, D.2    Schuster, S.M.3    Ferl, R.J.4    Almira, E.C.5    Dame, J.B.6
  • 44
    • 0028709114 scopus 로고
    • Molecular tools for genetic dissection of the protozoan parasite Toxoplasma gondii
    • Roos, D.S., Donald, R.G.K., Morrissette, N.S., and Moulton, A.L. 1994. Molecular tools for genetic dissection of the protozoan parasite Toxoplasma gondii. Methods Cell Biol. 45: 28-61.
    • (1994) Methods Cell Biol. , vol.45 , pp. 28-61
    • Roos, D.S.1    Donald, R.G.K.2    Morrissette, N.S.3    Moulton, A.L.4
  • 47
  • 48
    • 0031984191 scopus 로고    scopus 로고
    • Gliding motility: An efficient mechanism for cell penetration
    • Sibley, L.D., Håkansson, S., and Carruthers, V.B. 1998. Gliding motility: An efficient mechanism for cell penetration. Curr. Biol. 8: R12-R14.
    • (1998) Curr. Biol. , vol.8
    • Sibley, L.D.1    Håkansson, S.2    Carruthers, V.B.3
  • 49
    • 0034817498 scopus 로고    scopus 로고
    • Microneme proteins: Structural and functional requirements to promote adhesion and invasion by the Apicomplexan parasite Toxoplasma gondii
    • Soldati, D., Dubremetz, J.F., and Lebrun, M. 2001. Microneme proteins: Structural and functional requirements to promote adhesion and invasion by the Apicomplexan parasite Toxoplasma gondii. Intl. J. Parasitol. 31: 1293-1302.
    • (2001) Intl. J. Parasitol. , vol.31 , pp. 1293-1302
    • Soldati, D.1    Dubremetz, J.F.2    Lebrun, M.3
  • 51
    • 0030734119 scopus 로고    scopus 로고
    • Toxoplasma gondii sporozoites form a transient vacuole that is impermeable and contains only a subset of dense granule proteins
    • Tilley, M., Fishera, M., Jerome, M.E., Roos, D.S., and White, M.W. 1997. Toxoplasma gondii sporozoites form a transient vacuole that is impermeable and contains only a subset of dense granule proteins. Infect. Immun. 65: 4598-4605.
    • (1997) Infect. Immun. , vol.65 , pp. 4598-4605
    • Tilley, M.1    Fishera, M.2    Jerome, M.E.3    Roos, D.S.4    White, M.W.5
  • 53
    • 0029960911 scopus 로고
    • Toxoplasma gondii expressed sequence tags: Insight into tachyzoite gene expression
    • Wan, K.L., Blackwell, J.M., and Ajioka, J.W. 1995. Toxoplasma gondii expressed sequence tags: Insight into tachyzoite gene expression. Mol. Biochem. Parasitol. 75: 179-186.
    • (1995) Mol. Biochem. Parasitol. , vol.75 , pp. 179-186
    • Wan, K.L.1    Blackwell, J.M.2    Ajioka, J.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.