Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes

Plant Cell

Volumn 13, Issue 4, 2001, Pages 979-988

  Rossberg, M ^a   Theres, K ^a   Acarkan, A ^a   Herrero, R ^a   Schmitt, T ^a   Schumacher, K ^a   Schmitz, G ^a   Schmidt, R ^a  

^a Max Delbruck Laboratorium der Max Planck Gesellschaft   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMAL LOCALIZATION; CHROMOSOME; CHROMOSOME INVERSION; GENETIC SIMILARITY; PLANT CELL; SEQUENCE ANALYSIS; SYNTENY; TOMATO;

CELLS; CHROMOSOMES;

DICOTYLEDONOUS SPECIES;

PLANTS (BOTANY);

ARABIDOPSIS; CAPSELLA;

EID: 0035032414     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.13.4.979     Document Type: Article

References (31)

1. Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella
2. Basic local alignment search tool
3. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
4. Extensive duplication and reshuffling in the Arabidopsis genome
5. Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes
6. Arabidopsis-rice: Will colinearity allow gene prediction across the eudicot-monocot divide?
7. The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root
8. The WRKY superfamily of plant transcription factors
9. Comparative genetics in the grasses
10. Genome organization in dicots: Genome duplication in Arabidopsis and synteny between soybean and Arabidopsis
11. Independent deletions of a pathogen-resistance gene in Brassica and Arabidopsis
12. An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana
13. Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
14. Importance of anchor genomes for any plant genome project
15. Genes galore: A summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones
16. Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana
17. Toward a unified genetic map of higher plants, transcending the monocot-dicot divergence
18. Improved tools for biological sequence comparison
19. The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses
20. The GRAS gene family in Arabidopsis: Sequence characterization and basic expression analysis of the SCARECROW-LIKE genes
21. The TIGR gene indices: Reconstruction and representation of expressed gene sequences
22. Nested retrotransposons in the intergenic regions of the maize genome
23. International genome sequencing project; The effort to completely sequence the rice genome
24. The Arabidopsis thaliana genome: Towards a complete physical map
25. Synteny: Recent advances and future prospects
26. The Lateral suppressor (Ls) gene of tomato encodes a new member of the VHIID protein family
27. The Arabidopsis RGA gene encodes a transcriptional regulator repressing the gibberellin signal transduction pathway
28. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
29. High density molecular linkage maps of the tomato and potato genomes
30. Colinearity and its exceptions in orthologous adh regions of maize and sorghum
31. Identification and analysis of homoeologous segments of the genomes of rice and Arabidopsis thaliana