Collinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome

Genome

Volumn 41, Issue 1, 1998, Pages 62-69

  Cavell, A C ^a,b   Lydiate, D J ^a   Parkin, I A P ^a   Dean, C ^a   Trick, M ^a  

^a JOHN INNES CENTRE   (United Kingdom)

^b UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

Arabidopsis thaliana; Brassica napus; Collinearity; Comparative mapping

Indexed keywords

CHROMOSOMAL LOCALIZATION; CLONE; GENETIC CONSERVATION; HAPLOIDY; MOLECULAR CLONING; PLANT GENOME; SEQUENCE HOMOLOGY;

ARABIDOPSIS THALIANA; BRASSICA NAPUS;

EID: 0032007431     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/gen-41-1-62     Document Type: Article

References (28)

1. Arumuganathan, K., and Earle, E.D. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
2. Bohuon, E.J.R., Keith, D.J., Parkin, I.A.P., Sharpe, A.G., and Lydiate, D.J. 1996. Alignment of the conserved C genomes of Brassica oleracea and Brassica napus. Theor. Appl. Genet. 93: 833-839.
3. Bonierbale, M.W., Plaisted, R.L., and Tanksley, S.D. 1988. RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics, 120: 1095-1103.
4. Bonner, T.I., Brenner, D.J., Neufeld, B.R., and Britten, R.J. 1973. Reduction in the rate of DNA reassociation by sequence divergence. J. Mol. Biol. 81: 123-135.
5. Chyi, Y.S., Hoenecke, M.E., and Sernyk, J.L. 1992. A genetic linkage map of restriction fragment length polymorphism loci for Brassica rapa (syn. campestris). Genome, 35: 746-757.
6. Feinberg, A.P., and Vogelstein, B. 1983. A technique for radio-labeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
7. Genetics Computer Group 1994. Program manual for the Wisconsin Package, version 8. Genetics Computer Group, Madison, Wis.
8. Hedge, I.C. 1976. A systematic and geographical survey of the old world Cruciferae. In The biology and chemistry of the Cruciferac. Edited by A.J. Macleod and B.M.J. Jones. Academic Press, London. pp. 1-6.
9. Kowalski, S.P., Lan, T.-H., Feldmann, K.A., and Paterson, A.H. 1994. Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization. Genetics, 138: 1-12.
10. Kurata, N., Moore, G., Nagamura, Y., Foote, T., Yano, M., Minobe, Y., and Gale, M.D. 1994. Conservation of genome structure between rice and wheat. Bio/Technology (New York), 12: 276-278.
11. Lagercrantz, U., and Lydiate, D. 1996. Comparative genome mapping in Brassica. Genetics, 144: 1903-1910.
12. Lagercrantz, U., Puterill, J., Coupland, G., and Lydiate, D.J. 1996. Comparative mapping in Arabidopsis and Brassica, fine scale genome collinearity and congruence of genes controlling flowering time. Plant J. 9: 13-20.
13. Lydiate, D., Dale, P., Lagercrantz, U., Parkin, I., and Howell, P. 1995. Selecting the optimum genetic background for transgenic varieties, with examples from Brassica. Euphytica, 85: 351-358.
14. McConaughy, B.L., Laird, C.D., and McCarthy, B.J. 1969. Nucleic acid reassociation in formamide. Biochemistry, 8: 3289-3295.
15. Meyerowitz, E.M., and Pruitt, R.E. 1985. Arabidopsis thaliana and plant molecular genetics. Science (Washington, D.C.), 229: 1214-1218.
16. Osborn, T.C., Kole, C., Parkin, I.A.P., Sharpe, A.G., Kuiper, M., Lydiate, D.J., and Trick, M. 1997. Comparison of vernalization-responsive flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana. Genetics, 146: 1123-1130.
17. Parkin, I.A.P., Sharpe, A.G., Keith, D.J., and Lydiate, D.J. 1995. Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape). Genome, 38: 1122-1131.
18. Parkin, I.A.P., and Lydiate, D.J. 1997. Conserved patterns of chromosome pairing and recombination in Brassica napus crosses. Genome, 40: 496-504.
19. Pereira, M.G., Lee, M., Bramel-Cox, P., Woodman, W., Doebley, J., and Whitkus, R. 1993. Construction of an RFLP map in sorghum and comparative mapping in maize. Genome, 37: 236-243.
20. Prince, J.P., Pochard, E., and Tanksley, S.D. 1992. Construction of a molecular linkage map of pepper and a comparison of synteny with tomato. Genome, 36: 404-417.
21. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
22. Scheffler, J.A., Sharpe, A.G., Schmidt, H., Sperling, P., Parkin, I.A.P., Lühs, W., Lydiate, D.J., and Heinz, E. 1997. Desaturase multigene families of Brassica napus arose through genome duplication. Theor. Appl. Genet. 94: 583-591.
23. Schmidt, R., and Dean, C. 1992. Physical mapping of the Arabidopsis thaliana genome. In Genome analysis. Vol. 4. Strategies for physical mapping. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York. pp. 71-98.
24. Schmidt, R., West, J., Love, K., Lenehan, Z., Lister, C., Thompson, H., Bouchez, D., and Dean, C. 1995. Physical map and organization of Arabidopsis thaliana chromosome 4. Science (Washington, D.C.), 270: 480-483.
25. Sharpe, A.G., Parkin, I.A.P., Keith, D.J., and Lydiate, D.J. 1995. Frequent nonreciprocal translocations in the amphidiploid genome of oilseed rape (Brassica napus). Genome, 38: 1112-1121.
26. Slocum, M.K., Figdore, S.S., Kennard, W.C., Suzuki, J.Y., and Osborn, T.C. 1990. Linkage arrangement of restriction fragment length polymorphism loci in Brassica oleracea. Theor. Appl. Genet. 80: 57-64.
27. Song, K.M., Suzuki, J.Y., Slocum, M.K., Williams, P.H., and Osborn, T.C. 1991. A linkage map of Brassica rapa (syn. campestris) based on restriction fragment length polymorphism loci. Theor. Appl. Genet. 82: 296-304.
28. U, N. 1935. Genomic analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilisation. Jpn. J. Bot. 7: 389-452.