메뉴 건너뛰기




Volumn 47, Issue 2, 2003, Pages 133-142

Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities

Author keywords

Bifidobacterial community; Fecal microbiota; T RFLP

Indexed keywords

RIBOSOME DNA;

EID: 0037281247     PISSN: 03855600     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1348-0421.2003.tb02796.x     Document Type: Article
Times cited : (87)

References (32)
  • 1
    • 85046521685 scopus 로고
    • Analysis of the genome of the five Bifidobacterium breve strains: Plasmid content, pulsed-field gel electrophoresis genome size estimation and rrn loci number
    • Bourget, N., Simonet, J.M., and Decaris, B. 1993. Analysis of the genome of the five Bifidobacterium breve strains: plasmid content, pulsed-field gel electrophoresis genome size estimation and rrn loci number. FEMS Microbiol. Lett. 110: 11-20.
    • (1993) FEMS Microbiol. Lett. , vol.110 , pp. 11-20
    • Bourget, N.1    Simonet, J.M.2    Decaris, B.3
  • 2
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly, V., Rainey, F.A., and Stackebrandt, E. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61: 2798-2801.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 3
    • 0031692488 scopus 로고    scopus 로고
    • Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
    • Franks, A.H., Harmsen, H.J.M., Raangs, G.C., Jansen, G.J., Schut, F., and Welling, G.W. 1998. Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl. Environ. Microbiol. 64: 3336-3345.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3336-3345
    • Franks, A.H.1    Harmsen, H.J.M.2    Raangs, G.C.3    Jansen, G.J.4    Schut, F.5    Welling, G.W.6
  • 4
    • 0036024611 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
    • Hayashi, H., Sakamoto, M., and Benno, Y. 2002. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol. Immunol. 46: 535-548.
    • (2002) Microbiol. Immunol. , vol.46 , pp. 535-548
    • Hayashi, H.1    Sakamoto, M.2    Benno, Y.3
  • 5
    • 0036139245 scopus 로고    scopus 로고
    • Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA
    • Heilig, H.G.H.J., Zoetendal, E.G., Vaughan, E.E., Marteau, P., and Akkermans, A.D.L. 2002. Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl. Environ. Microbiol. 68: 114-123.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 114-123
    • Heilig, H.G.H.J.1    Zoetendal, E.G.2    Vaughan, E.E.3    Marteau, P.4    Akkermans, A.D.L.5
  • 6
    • 0029115109 scopus 로고
    • Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA genes from methanogens
    • Hiraishi, A., Kamagata, Y., and Nakamura, K. 1995. Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA genes from methanogens. J. Ferment. Bioeng. 79: 523-529.
    • (1995) J. Ferment. Bioeng. , vol.79 , pp. 523-529
    • Hiraishi, A.1    Kamagata, Y.2    Nakamura, K.3
  • 7
    • 0034253204 scopus 로고    scopus 로고
    • Terminal restriction pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge
    • Hiraishi, A., Iwasaki, M., and Shinjo, H. 2000. Terminal restriction pattern analysis of 16S rRNA genes for the characterization of bacterial communities of activated sludge. J. Biosci. Bioeng. 90: 148-156.
    • (2000) J. Biosci. Bioeng. , vol.90 , pp. 148-156
    • Hiraishi, A.1    Iwasaki, M.2    Shinjo, H.3
  • 9
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt, E., and Goodfellow, M. (eds), John Wiley and Sons, New York
    • Lane, D.J. 1991. 16S/23S rRNA sequencing, p. 115-175. In Stackebrandt, E., and Goodfellow, M. (eds), Nucleic acid techniques in bacterial systematics, John Wiley and Sons, New York.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 10
    • 0029162158 scopus 로고
    • Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples
    • Langendijk, P.S., Schut, F., Jansen, G.J., Raangs, G.C., Kamphuis, G.R., Wilkinson, M.H.F., and Welling, G.W. 1995. Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Appl. Environ. Microbiol. 61: 3069-3075.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3069-3075
    • Langendijk, P.S.1    Schut, F.2    Jansen, G.J.3    Raangs, G.C.4    Kamphuis, G.R.5    Wilkinson, M.H.F.6    Welling, G.W.7
  • 11
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W.-T., Marsh, T.L., Cheng, H., and Forney, L.J. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63: 4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.-T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 12
    • 0031757493 scopus 로고    scopus 로고
    • Rapid identification of human intestinal bifidobacteria by 16S rRNA-targeted species- and group-specific primers
    • Matsuki, T., Watanabe, K., Tanaka, R., and Oyaizu, H. 1998. Rapid identification of human intestinal bifidobacteria by 16S rRNA-targeted species- and group-specific primers. FEMS Microbiol. Lett. 167: 113-121.
    • (1998) FEMS Microbiol. Lett. , vol.167 , pp. 113-121
    • Matsuki, T.1    Watanabe, K.2    Tanaka, R.3    Oyaizu, H.4
  • 13
    • 0032878580 scopus 로고    scopus 로고
    • Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-genetargeted species-specific primers
    • Matsuki, T., Watanabe, K., Tanaka, R., Fukuda, M., and Oyaizu, H. 1999. Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-genetargeted species-specific primers. Appl. Environ. Microbiol. 65: 4506-4512.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4506-4512
    • Matsuki, T.1    Watanabe, K.2    Tanaka, R.3    Fukuda, M.4    Oyaizu, H.5
  • 14
    • 0031790825 scopus 로고    scopus 로고
    • Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences
    • Miyake, T., Watanabe, K., Watanabe, T., and Oyaizu, H. 1998. Phylogenetic analysis of the genus Bifidobacterium and related genera based on 16S rDNA sequences. Microbiol. Immunol. 42: 661-667.
    • (1998) Microbiol. Immunol. , vol.42 , pp. 661-667
    • Miyake, T.1    Watanabe, K.2    Watanabe, T.3    Oyaizu, H.4
  • 15
    • 0029902203 scopus 로고    scopus 로고
    • A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature
    • Moyer, C.L., Tiedje, J.M., Dobbs, F.C., and Karl, D.M. 1996. A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl. Environ. Microbiol. 62: 2501-2507.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2501-2507
    • Moyer, C.L.1    Tiedje, J.M.2    Dobbs, F.C.3    Karl, D.M.4
  • 16
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E.C., and Uitterlinden, A.G. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59: 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 19
    • 0033851746 scopus 로고    scopus 로고
    • Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries
    • Sakamoto, M., Umeda, M., Ishikawa, I., and Benno, Y. 2000. Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries. Microbiol. Immunol. 44: 643-652.
    • (2000) Microbiol. Immunol. , vol.44 , pp. 643-652
    • Sakamoto, M.1    Umeda, M.2    Ishikawa, I.3    Benno, Y.4
  • 20
    • 0037239111 scopus 로고    scopus 로고
    • Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis
    • Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., and Benno, Y. 2003. Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis. J. Med. Microbiol. 52: 79-89.
    • (2003) J. Med. Microbiol. , vol.52 , pp. 79-89
    • Sakamoto, M.1    Takeuchi, Y.2    Umeda, M.3    Ishikawa, I.4    Benno, Y.5
  • 21
    • 0035146181 scopus 로고    scopus 로고
    • Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis
    • Satokari, R.M., Vaughan, E.E., Akkermans, A.D.L., Saarela, M., and de Vos, W.M. 2001. Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 67: 504-513.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 504-513
    • Satokari, R.M.1    Vaughan, E.E.2    Akkermans, A.D.L.3    Saarela, M.4    De Vos, W.M.5
  • 22
    • 0034894451 scopus 로고    scopus 로고
    • Polymerase chain reaction and denaturing gradient gel electrophoresis monitoring of fecal Bifidobacterium populations in a prebiotic and probiotic feeding trial
    • Satokari, R.M., Vaughan, E.E., Akkermans, A.D.L., Saarela, M., and de Vos, W.M. 2001. Polymerase chain reaction and denaturing gradient gel electrophoresis monitoring of fecal Bifidobacterium populations in a prebiotic and probiotic feeding trial. System. Appl. Microbiol. 24: 227-231.
    • (2001) System. Appl. Microbiol. , vol.24 , pp. 227-231
    • Satokari, R.M.1    Vaughan, E.E.2    Akkermans, A.D.L.3    Saarela, M.4    De Vos, W.M.5
  • 23
    • 0034017583 scopus 로고    scopus 로고
    • Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization
    • Sghir, A., Gramet, G., Suau, A., Rochet, V., Pochart, P., and Dore, J. 2000. Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization. Appl. Environ. Microbiol. 66: 2263-2266.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2263-2266
    • Sghir, A.1    Gramet, G.2    Suau, A.3    Rochet, V.4    Pochart, P.5    Dore, J.6
  • 24
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau, A., Bonnet, R., Sutren, M., Godon, J.J., Gibson, G.R., Collins, M.D., and Doré, J. 1999. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65: 4799-4807.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.J.4    Gibson, G.R.5    Collins, M.D.6    Doré, J.7
  • 25
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M.T., and Giovannoni, S.J. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62: 625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 26
    • 0002883748 scopus 로고
    • Clinical effects of bifidobacteria and lactobacilli
    • Fuller, R., Heidt, P.J., Rusch, V., and Waaij, D.V.D. (eds) Old Herborn University seminar monograph 8. Institute for Microbiology and Biochemistry, Herborn-Dill, Germany
    • Tanaka, R. 1995. Clinical effects of bifidobacteria and lactobacilli, p. 141-157. In Fuller, R., Heidt, P.J., Rusch, V., and Waaij, D.V.D. (eds) Probiotics: prospects of use in opportunistic infections. Old Herborn University seminar monograph 8. Institute for Microbiology and Biochemistry, Herborn-Dill, Germany.
    • (1995) Probiotics: Prospects of Use in Opportunistic Infections , pp. 141-157
    • Tanaka, R.1
  • 27
    • 0034129592 scopus 로고    scopus 로고
    • Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20
    • Tannock, G.W., Munro, K., Harmsen, H.J.M., Welling, G.W., Smart, J., and Gopal, P.K. 2000. Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20. Appl. Environ. Microbiol. 66: 2578-2588.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2578-2588
    • Tannock, G.W.1    Munro, K.2    Harmsen, H.J.M.3    Welling, G.W.4    Smart, J.5    Gopal, P.K.6
  • 28
    • 0035374627 scopus 로고    scopus 로고
    • Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis
    • Walter, J., Hertel, C., Tannock, G.W., Lis, C.M., Munro, K., and Hammes, W.P. 2001. Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces by using group-specific PCR primers and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 67: 2578-2585.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2578-2585
    • Walter, J.1    Hertel, C.2    Tannock, G.W.3    Lis, C.M.4    Munro, K.5    Hammes, W.P.6
  • 29
    • 0029881547 scopus 로고    scopus 로고
    • PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
    • Wang, R.-F., Cao, W.-W., and Cerniglia, C.E. 1996. PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62: 1242-1247.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1242-1247
    • Wang, R.-F.1    Cao, W.-W.2    Cerniglia, C.E.3
  • 30
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson, K.H., and Blitchington, R.B. 1996. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62: 2273-2278.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2
  • 31
    • 0032874559 scopus 로고    scopus 로고
    • Sequence analysis of 16S rRNA genes amplified from two ribosomal RNA gene clusters of Bifidobacterium bifidum
    • Yoon, J.-H., Yim, D.K., Goodfellow, M., and Park, Y.-H. 1999. Sequence analysis of 16S rRNA genes amplified from two ribosomal RNA gene clusters of Bifidobacterium bifidum. Antonie Leeuwenhoek 75: 329-333.
    • (1999) Antonie Leeuwenhoek , vol.75 , pp. 329-333
    • Yoon, J.-H.1    Yim, D.K.2    Goodfellow, M.3    Park, Y.-H.4
  • 32
    • 0031684010 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
    • Zoetendal, E.G., Akkermans, A.D.L., and de Vos, W.M. 1998. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl. Environ. Microbiol. 64: 3854-3859.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3854-3859
    • Zoetendal, E.G.1    Akkermans, A.D.L.2    De Vos, W.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.