메뉴 건너뛰기




Volumn 28, Issue 1, 1997, Pages 1-9

Prediction of the structure of the replication initiator protein DnaA

Author keywords

ATP binding; DNA binding protein; helix loop helix motif; open twisted structure; P loop; sequence alignment

Indexed keywords

DNA; DNA BINDING PROTEIN;

EID: 0030894736     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(199705)28:1<1::AID-PROT1>3.0.CO;2-K     Document Type: Article
Times cited : (39)

References (35)
  • 1
    • 0021720088 scopus 로고
    • The dnaA protein complex with the E. coli chromosomal origin (oriC) and other sites
    • Fuller, R.S., Funnell, B.E., Kornberg, A. The dnaA protein complex with the E. coli chromosomal origin (oriC) and other sites. Cell 38:889-900, 1984.
    • (1984) Cell , vol.38 , pp. 889-900
    • Fuller, R.S.1    Funnell, B.E.2    Kornberg, A.3
  • 2
    • 0029742491 scopus 로고    scopus 로고
    • A comprehensive set of DnaA box mutations in the replication origin, oriC, of Escherichia coli
    • Langer, U., Richter, S., Roth, A., Weigel, C., Messer, W. A comprehensive set of DnaA box mutations in the replication origin, oriC, of Escherichia coli. Mol. Microbiol. 21:301-311, 1996.
    • (1996) Mol. Microbiol. , vol.21 , pp. 301-311
    • Langer, U.1    Richter, S.2    Roth, A.3    Weigel, C.4    Messer, W.5
  • 3
    • 0024284091 scopus 로고
    • Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome
    • Bramhill, D., Kornberg, A. Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome. Cell 52:743-755, 1988.
    • (1988) Cell , vol.52 , pp. 743-755
    • Bramhill, D.1    Kornberg, A.2
  • 4
    • 0025905171 scopus 로고
    • Localized unwinding and structural pertubations in the origin of replication, oriC, of Escherichia coli in vitro and in vivo
    • Gille, H., Messer, W. Localized unwinding and structural pertubations in the origin of replication, oriC, of Escherichia coli in vitro and in vivo. EMBO J. 10:1579-1584, 1991.
    • (1991) EMBO J. , vol.10 , pp. 1579-1584
    • Gille, H.1    Messer, W.2
  • 5
    • 0023884932 scopus 로고
    • Sequential early stages in the in vitro initiation of replication at the origin of the Escherichia coli chromosome
    • Sekimizu, K., Bramhill, D., Kornberg, A. Sequential early stages in the in vitro initiation of replication at the origin of the Escherichia coli chromosome. J. Biol. Chem. 263:7124-7130, 1988.
    • (1988) J. Biol. Chem. , vol.263 , pp. 7124-7130
    • Sekimizu, K.1    Bramhill, D.2    Kornberg, A.3
  • 6
    • 0028325333 scopus 로고
    • The initiator protein DnaA: Evolution, properties and function
    • Skarstad, K., Boye, E. The initiator protein DnaA: evolution, properties and function. Biochim. Biophys. Acta 1217: 111-130, 1994.
    • (1994) Biochim. Biophys. Acta , vol.1217 , pp. 111-130
    • Skarstad, K.1    Boye, E.2
  • 7
    • 0001053258 scopus 로고    scopus 로고
    • Initiation of chromosome replication
    • Neidhardt, F.C., Curtiss III, R., Ingraham, J., Lin, E.C.C., Low, K.B., Magasanik, B., Reznikoff, W.S., Riley, M., Schaechter, M., Umbarger, H. (eds.). Second Edition, Washington, D.C.: ASM
    • Messer, W., Weigel, C. Initiation of chromosome replication. In: "Escherichia coli and Salmonella." Neidhardt, F.C., Curtiss III, R., Ingraham, J., Lin, E.C.C., Low, K.B., Magasanik, B., Reznikoff, W.S., Riley, M., Schaechter, M., Umbarger, H. (eds.). Second Edition, Washington, D.C.: ASM, 1996:1579-1601.
    • (1996) Escherichia Coli and Salmonella , pp. 1579-1601
    • Messer, W.1    Weigel, C.2
  • 8
    • 0028798697 scopus 로고
    • Transcriptional activation of the origin of coliphage λ DNA replication is regulated by the host DnaA initiator function
    • Wegrzyn, G., Szalewska-Palasz, A., Wegrzyn, A., Obuchowski, M., Taylor, K. Transcriptional activation of the origin of coliphage λ DNA replication is regulated by the host DnaA initiator function. Gene 154:47-50, 1995.
    • (1995) Gene , vol.154 , pp. 47-50
    • Wegrzyn, G.1    Szalewska-Palasz, A.2    Wegrzyn, A.3    Obuchowski, M.4    Taylor, K.5
  • 9
    • 0023658349 scopus 로고
    • ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome
    • Sekimizu, K., Bramhill, D., Kornberg, A. ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome. Cell 50:259-265, 1987.
    • (1987) Cell , vol.50 , pp. 259-265
    • Sekimizu, K.1    Bramhill, D.2    Kornberg, A.3
  • 10
    • 0026787446 scopus 로고
    • The chromosome origin of Escherichia coli stabilizes DnaA protein during rejuvenation by phospholipids
    • Crooke, E., Castuma, C.E., Kornberg, A. The chromosome origin of Escherichia coli stabilizes DnaA protein during rejuvenation by phospholipids. J. Biol. Chem. 267:16779-16782, 1992.
    • (1992) J. Biol. Chem. , vol.267 , pp. 16779-16782
    • Crooke, E.1    Castuma, C.E.2    Kornberg, A.3
  • 11
    • 0027381536 scopus 로고
    • Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope
    • Crooke, E., Thresher, R., Hwang, D.S., Griffith, J., Kornberg, A. Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope. J. Mol. Biol. 233:16-24, 1993.
    • (1993) J. Mol. Biol. , vol.233 , pp. 16-24
    • Crooke, E.1    Thresher, R.2    Hwang, D.S.3    Griffith, J.4    Kornberg, A.5
  • 12
    • 0029088758 scopus 로고
    • Interaction of the initiator protein DnaA of Escherichia coli with its DNA target
    • Schaper, S., Messer, W. Interaction of the initiator protein DnaA of Escherichia coli with its DNA target. J. Biol. Chem. 270:17622-17626, 1995.
    • (1995) J. Biol. Chem. , vol.270 , pp. 17622-17626
    • Schaper, S.1    Messer, W.2
  • 13
    • 0029030019 scopus 로고
    • The DNA binding domain of the initiator protein DnaA
    • Roth, A., Messer, W. The DNA binding domain of the initiator protein DnaA. EMBO J. 14:2106-2111, 1995.
    • (1995) EMBO J. , vol.14 , pp. 2106-2111
    • Roth, A.1    Messer, W.2
  • 14
    • 0028300741 scopus 로고
    • Combining evolutionary information and neural networks to predict protein secondary structure
    • Rost, B., Sander, C. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19:55-74, 1994.
    • (1994) Proteins , vol.19 , pp. 55-74
    • Rost, B.1    Sander, C.2
  • 15
    • 0028109886 scopus 로고
    • Conservation and prediction of solvent accessibility in protein families
    • Rost, B., Sander, C. Conservation and prediction of solvent accessibility in protein families. Proteins 20:216-226, 1994.
    • (1994) Proteins , vol.20 , pp. 216-226
    • Rost, B.1    Sander, C.2
  • 16
    • 0025796712 scopus 로고
    • The SWISS-PROT sequence data bank
    • Bairoch, A., Boeckmann, B. The SWISS-PROT sequence data bank. Nucleic Acids Res. 19:2247-2250, 1991.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 2247-2250
    • Bairoch, A.1    Boeckmann, B.2
  • 17
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • Sander, C., Schneider, R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 9:56-68, 1991.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 18
    • 0028158628 scopus 로고
    • PHD - An automatic mail server for protein secondary structure prediction
    • Rost, B., Sander, C., Schneider, R. PHD - an automatic mail server for protein secondary structure prediction. Comput. Appl. Biosci. 10:53-60, 1994.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 53-60
    • Rost, B.1    Sander, C.2    Schneider, R.3
  • 19
    • 0027950247 scopus 로고
    • A versatile plasmid vector system for the regulated expression of genes in Escherichia coli
    • Diederich, L., Roth, A., Messer, W. A versatile plasmid vector system for the regulated expression of genes in Escherichia coli. BioTechniques 16:916-923, 1994.
    • (1994) BioTechniques , vol.16 , pp. 916-923
    • Diederich, L.1    Roth, A.2    Messer, W.3
  • 20
    • 0011255006 scopus 로고
    • Cloning and expression of the 1.3S biotin-containing subunit of transcarboxylase
    • Murtif, V.L., Bahler, C.R., Samols, D. Cloning and expression of the 1.3S biotin-containing subunit of transcarboxylase. Proc. Natl. Acad. Sci. USA 82:5617-5621, 1985.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 5617-5621
    • Murtif, V.L.1    Bahler, C.R.2    Samols, D.3
  • 21
    • 0025052574 scopus 로고
    • Structure of the dnaA region in Micrococcus luteus: Conservation and variation among eubacteria
    • Fujita, M.Q., Yoshikawa, H., Ogasawara, N. Structure of the dnaA region in Micrococcus luteus: Conservation and variation among eubacteria. Gene 93:73-78, 1990.
    • (1990) Gene , vol.93 , pp. 73-78
    • Fujita, M.Q.1    Yoshikawa, H.2    Ogasawara, N.3
  • 22
    • 12944300317 scopus 로고
    • Binding of nucleotides by proteins
    • Schulz, G.E. Binding of nucleotides by proteins. Curr. Opin. Struct. Biol. 2:61-67, 1992.
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 61-67
    • Schulz, G.E.1
  • 23
    • 0023024626 scopus 로고
    • The glycine-rich loop of adenylate kinase forms a giant anion hole
    • Dreusicke, D., Schulz, G.E. The glycine-rich loop of adenylate kinase forms a giant anion hole. FEBS Lett. 208:301-304, 1986.
    • (1986) FEBS Lett. , vol.208 , pp. 301-304
    • Dreusicke, D.1    Schulz, G.E.2
  • 24
    • 0025048136 scopus 로고
    • The P-loop - A common motif in ATP- and GTP-binding proteins
    • Saraste, M., Sibbald, P.R., Wittinghofer, A. The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biol. Sci. 15:430-434, 1990.
    • (1990) Trends Biol. Sci. , vol.15 , pp. 430-434
    • Saraste, M.1    Sibbald, P.R.2    Wittinghofer, A.3
  • 25
    • 0024295767 scopus 로고
    • The leucine zipper: A hypothetical structure common to a new class of DNa binding proteins
    • Landschulz, W.H., Johnson, P.F., McKnight, S.L. The leucine zipper: A hypothetical structure common to a new class of DNA binding proteins. Science 240:1759-1764, 1988.
    • (1988) Science , vol.240 , pp. 1759-1764
    • Landschulz, W.H.1    Johnson, P.F.2    McKnight, S.L.3
  • 26
    • 0024963927 scopus 로고
    • Action of leucine zippers
    • Abel, T. Maniatis, T. Action of leucine zippers. Nature 341:24-25, 1989.
    • (1989) Nature , vol.341 , pp. 24-25
    • Abel, T.1    Maniatis, T.2
  • 29
    • 0021112498 scopus 로고
    • The nucleotide sequence of replication and maintenance functions encoded by plasmid pSC101
    • Churchward, G., Linder, P., Caro, L. The nucleotide sequence of replication and maintenance functions encoded by plasmid pSC101. Nucleic Acids Res. 11:5645-5659, 1983.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 5645-5659
    • Churchward, G.1    Linder, P.2    Caro, L.3
  • 30
    • 0023766613 scopus 로고
    • A model for initiation at origins of DNA replication
    • Bramhill, D., Kornberg, A. A model for initiation at origins of DNA replication. Cell 54:915-918, 1988.
    • (1988) Cell , vol.54 , pp. 915-918
    • Bramhill, D.1    Kornberg, A.2
  • 31
    • 0028118685 scopus 로고
    • Getting a grip on DNA recognition: Structures of the basic region leucine zipper, and the basic region helix-loop-helix DNA-binding domains
    • Ellenberger, T. Getting a grip on DNA recognition: Structures of the basic region leucine zipper, and the basic region helix-loop-helix DNA-binding domains. Curr. Opin. Struct. Biol. 4:12-21, 1994.
    • (1994) Curr. Opin. Struct. Biol. , vol.4 , pp. 12-21
    • Ellenberger, T.1
  • 32
    • 0025301439 scopus 로고
    • Protein secondary structure and circular dichroism: A practical guide
    • Johnson, W.C. Protein secondary structure and circular dichroism: A practical guide. Proteins 7:205-214, 1990.
    • (1990) Proteins , vol.7 , pp. 205-214
    • Johnson, W.C.1
  • 33
    • 0029880647 scopus 로고    scopus 로고
    • Membrane regulation of the chromosomal replication activity of E. coli DnaA requires a discrete site on the protein
    • Garner, J., Crooke, E. Membrane regulation of the chromosomal replication activity of E. coli DnaA requires a discrete site on the protein. EMBO J. 15:3477-3485, 1996.
    • (1996) EMBO J. , vol.15 , pp. 3477-3485
    • Garner, J.1    Crooke, E.2
  • 34
    • 0027267908 scopus 로고
    • A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication
    • Koonin, E.V. A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res. 21:2541-2547, 1993.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 2541-2547
    • Koonin, E.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.