-
5
-
-
0028168537
-
Rethinking “shape space”: evidence from simulated docking suggests that steric shape complementarity is not limiting for antibody-antigen recognition and idiotypic interactions
-
(1994)
J. Theor. Biol.
, vol.169
, pp. 391-402
-
-
Carneiro1
Stewart2
-
10
-
-
0016352763
-
Hydrophobic bonding and accessible surface area in proteins
-
(1974)
Nature
, vol.248
, pp. 338-339
-
-
Chothia1
-
11
-
-
0016708122
-
Principles of protein-protein recognition
-
(1975)
Nature
, vol.256
, pp. 705-708
-
-
Chothia1
Janin2
-
12
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly1
-
15
-
-
0026924836
-
Shape distribution of protein topography
-
(1992)
Biopolymers
, vol.32
, pp. 1215-1236
-
-
Connolly1
-
19
-
-
0027551946
-
Approximation and characterization of molecular surfaces
-
(1993)
Biopolymers
, vol.33
, pp. 219-229
-
-
Duncan1
Olson2
-
22
-
-
0027049805
-
The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted α-helices: crystal structure of a the protein-DNA complex
-
(1992)
Cell
, vol.71
, pp. 1223-1237
-
-
Ellenberger1
Brandl2
Struhl3
Harrison4
-
26
-
-
0025135112
-
Automated docking of substrates to proteins by simulated annealing
-
(1990)
Proteins
, vol.8
, pp. 195-202
-
-
Goodsell1
Olson2
-
30
-
-
0028280409
-
Isothermal titration calorimetric study of the association of hen egg lysozyme and the anti-lysozyme antibody HyHEL5
-
(1994)
Biochemistry
, vol.33
, pp. 3584-3590
-
-
Hibbitts1
Gill2
Wilson3
-
31
-
-
0027087369
-
Calculation of the free energy of association for protein complexes
-
(1992)
Protein Sci.
, vol.1
, pp. 169-181
-
-
Horton1
Lewis2
-
32
-
-
0029019869
-
A continuum model for protein-protein interactions: application to the docking problem
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 258-275
-
-
Jackson1
Sternberg2
-
33
-
-
0021908041
-
A reaction pathway for the quaternary structure change in hemoglobin
-
(1985)
Biopolymers
, vol.24
, pp. 509-526
-
-
Janin1
Wodak2
-
36
-
-
0028853544
-
Principles of protein-protein recognition from structure to thermodynamics
-
(1995)
Biochimie
, vol.77
, pp. 497-505
-
-
Janin1
-
38
-
-
0026310932
-
“Soft Docking”: matching of molecular surface cubes
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 79-102
-
-
Jiang1
Kim2
-
41
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATA element
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim1
Nikolov2
Burley3
-
43
-
-
0028181137
-
Monte Carlo docking of protein-DNA complexes: incorporation of DNA flexibility and exprerimental data
-
(1994)
Protein Eng.
, vol.7
, pp. 761-767
-
-
Knegtel1
Boelens2
Kaptein3
-
47
-
-
0028158936
-
Ligand docking to proteins with discrete side-chain flexibility
-
(1994)
J. Mol. Biol.
, vol.2357
, pp. 345-356
-
-
Leach1
-
49
-
-
0022105876
-
Molecular recognition. I. Automatic identification of topograpic surface features
-
(1985)
Biopolymers
, vol.24
, pp. 1613-1627
-
-
Lee1
Rose2
-
53
-
-
0025360593
-
Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solution: hydration effect
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 375-384
-
-
Makhatadze1
Privalov2
-
63
-
-
0029089732
-
Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse, points in docking
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 263-273
-
-
Norel1
Lin2
Wolfson3
Nussinov4
-
69
-
-
0001971367
-
The nature of the intermolecular forces operative in biological processes
-
(1940)
Science
, vol.92
, pp. 77-79
-
-
Pauling1
Delbrück2
-
72
-
-
0016224361
-
A thermodynamic approach to the problem of stabilization of globular protein structure: a calorimetric study
-
(1974)
J. Mol. Biol.
, vol.86
, pp. 665-684
-
-
Privalov1
Khechinashvili2
-
82
-
-
0026684671
-
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding form the removal of non-polar and polar surface from water
-
(1992)
Biochemistry
, vol.31
, pp. 3947-3955
-
-
Spolar1
Livingstone2
Record3
-
83
-
-
0028174101
-
Protein side-chain conformational entropy derived from fusion data-comparison with other empirical scales
-
(1994)
Protein Eng.
, vol.7
, pp. 149-155
-
-
Sternberg1
Chickos2
-
88
-
-
0014718113
-
Protein denaturation. Part C. Theoretical models for the mechanism of denaturation
-
(1970)
Adv. Protein Chem.
, vol.24
, pp. 1-95
-
-
Tanford1
-
90
-
-
0028227795
-
N9 Neuraminidase complexes with antibodies NC41 and CN10: empirical free energy calculations capture specificity trends observed with mutant binding data
-
(1994)
Biochemistry
, vol.33
, pp. 7986-7997
-
-
Tulip1
Harley2
Webster3
Novotny4
-
93
-
-
0028984540
-
Protein docking for low-resolution structures
-
(1995)
Protein Eng.
, vol.8
, pp. 371-377
-
-
Vakser1
-
94
-
-
0028881193
-
Empirical free energy calculations of ligand-protein crystallographic complexes. I. Knowledge-based ligand-protein interaction potentials applied to the prediction of human immunodeficiency virus 1 protease binding affinity
-
(1995)
Protein Eng.
, vol.8
, pp. 677-691
-
-
Verkhivker1
Appelt2
Freer3
Villafranca4
|